FFCP PHASE1:Hg19::chr10:17116678..17116696,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:17116678..17116696,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr10:17116678..17116696,+ | |||
|id=chr10:17116678..17116696,+ | |||
|ontology_enrichment_celltype=CL:0002057!8.70e-52!42;CL:0000860!1.36e-47!45;CL:0002009!4.29e-35!65;CL:0002194!2.44e-34!63;CL:0000576!2.44e-34!63;CL:0000040!2.44e-34!63;CL:0000559!2.44e-34!63;CL:0000766!2.99e-34!76;CL:0000557!4.62e-33!71;CL:0000839!1.14e-31!70;CL:0000763!8.97e-21!112;CL:0000049!8.97e-21!112;CL:0000738!2.02e-17!140;CL:0000134!1.09e-15!358;CL:0002087!1.91e-15!119;CL:0002031!2.45e-15!124;CL:0002320!5.16e-15!365;CL:0000219!1.53e-14!390;CL:0000037!5.66e-12!172;CL:0000566!5.66e-12!172;CL:0000048!1.36e-11!430;CL:0002032!2.59e-11!165;CL:0000837!2.59e-11!165;CL:0000034!3.01e-11!444;CL:0000723!3.65e-11!436;CL:0000988!1.08e-10!182;CL:0002371!2.97e-08!591;CL:0000569!4.03e-08!4;CL:0000011!4.03e-08!4;CL:0000063!5.97e-08!578;CL:0000144!1.16e-07!625;CL:0000767!1.95e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.89e-102;33!CL:0002057;2.89e-102;33!CL:0000473;7.12e-74;39!CL:0000234;7.12e-74;39!CL:0000576;2.11e-57;48!CL:0000766;1.78e-40;69!CL:0000763;4.90e-17;100!CL:0000767;1.16e-16;3!CL:0002087;8.00e-16;104!CL:0000738;1.95e-09;136!CL:0002393;6.54e-09;6!CL:0002397;6.54e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.48e-108,42;CL:0002057,9.48e-108,42;CL:0000473,3.11e-100,48;CL:0000234,3.11e-100,48;CL:0002194,4.78e-79,59;CL:0000576,4.78e-79,59;CL:0000040,4.78e-79,59;CL:0000559,4.78e-79,59;CL:0000766,5.83e-78,72;CL:0002009,2.60e-76,61;CL:0000839,3.45e-70,66;CL:0000557,4.51e-69,67;CL:0000763,3.05e-50,108;CL:0000049,3.05e-50,108;CL:0000738,2.38e-41,136;CL:0002087,7.32e-41,115;CL:0002031,2.89e-36,120;CL:0000037,2.34e-32,168;CL:0002032,8.12e-32,161;CL:0000837,8.12e-32,161;CL:0000988,2.08e-30,177;CL:0000767,1.01e-16,3;CL:0000134,4.33e-12,354;CL:0002320,9.90e-12,361;CL:0000219,1.83e-10,386;CL:0000034,2.86e-09,441;CL:0000048,6.50e-09,427;CL:0000723,1.06e-08,433 | |||
|ontology_enrichment_development_v019=CL:0002057;1.48e-78;42!CL:0000049;4.89e-13;108 | |||
|ontology_enrichment_disease=DOID:2394!9.89e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.65e-30!80;UBERON:0001474!7.17e-27!86;UBERON:0004765!8.27e-24!101;UBERON:0001434!8.27e-24!101;UBERON:0002390!2.66e-22!102;UBERON:0003061!2.66e-22!102;UBERON:0002193!2.71e-19!112;UBERON:0002405!1.92e-18!115;UBERON:0002384!9.48e-15!375;UBERON:0002204!2.94e-12!167;UBERON:0003081!2.16e-11!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.52e-60,76;UBERON:0001474,1.52e-55,82;UBERON:0004765,3.76e-50,90;UBERON:0002390,6.78e-49,98;UBERON:0003061,6.78e-49,98;UBERON:0002405,2.30e-48,93;UBERON:0001434,1.31e-44,100;UBERON:0002193,7.24e-44,108;UBERON:0002204,1.83e-24,167;UBERON:0003081,1.23e-20,203;UBERON:0002384,3.06e-11,371;UBERON:0000926,3.83e-11,315;UBERON:0004120,3.83e-11,315;UBERON:0006603,3.83e-11,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,4.22212337906934,1.70297735647684,0,0,0,0,0,0,9.97191735357379,3.20871115952227,5.64228263861215,0,0,0,0.581592955118259,0.377875943688809,0.242584061187816,3.25400651667958,4.11167888021826,6.81354015969228,13.8092348314632,8.70946402198942,20.1009895405297,20.3399951634605,25.1739026597692,16.251178391321,1.12945403725563,3.27487380069415,5.16864014223695,34.8935637302829,25.0324641119353,23.0161365287655,0.989553900560148,1.39624560335142,2.55734850319616,17.9929727949722,7.94339314567596,15.5705562248894,11.5574386018102,6.25779502104242,14.986030284653,9.6863920421339,19.5187147073409,34.4944002310564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92355994087075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0.49333509683432,0,0,0,0,0,0.234321431833797,0,0,0,0.23486899728753,0,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0,0.591092280605782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0.519254429183621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0.542999601753713,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74627401443437,0.233713309847224,0,0.189403005275089,0,0,0.228840068396924,0.302461847526478,0.310874401165561,0.295710299979268,0.318593534327405,0.449803112163605,0,0,0.265841714557995,0,0.300515217994437,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0.398095888698616,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0.606965604236632,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr10:17116678..17116696,+ | |||
}} |
Latest revision as of 12:11, 23 July 2015
Short description: | p@chr10:17116678..17116696, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:17116678..17116696, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.48e-108 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.48e-108 | 42 |
defensive cell | 3.11e-100 | 48 |
phagocyte | 3.11e-100 | 48 |
monopoietic cell | 4.78e-79 | 59 |
monocyte | 4.78e-79 | 59 |
monoblast | 4.78e-79 | 59 |
promonocyte | 4.78e-79 | 59 |
myeloid leukocyte | 5.83e-78 | 72 |
macrophage dendritic cell progenitor | 2.60e-76 | 61 |
myeloid lineage restricted progenitor cell | 3.45e-70 | 66 |
granulocyte monocyte progenitor cell | 4.51e-69 | 67 |
myeloid cell | 3.05e-50 | 108 |
common myeloid progenitor | 3.05e-50 | 108 |
leukocyte | 2.38e-41 | 136 |
nongranular leukocyte | 7.32e-41 | 115 |
hematopoietic lineage restricted progenitor cell | 2.89e-36 | 120 |
hematopoietic stem cell | 2.34e-32 | 168 |
hematopoietic oligopotent progenitor cell | 8.12e-32 | 161 |
hematopoietic multipotent progenitor cell | 8.12e-32 | 161 |
hematopoietic cell | 2.08e-30 | 177 |
basophil | 1.01e-16 | 3 |
mesenchymal cell | 4.33e-12 | 354 |
connective tissue cell | 9.90e-12 | 361 |
motile cell | 1.83e-10 | 386 |
stem cell | 2.86e-09 | 441 |
multi fate stem cell | 6.50e-09 | 427 |
somatic stem cell | 1.06e-08 | 433 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.52e-60 | 76 |
bone element | 1.52e-55 | 82 |
skeletal element | 3.76e-50 | 90 |
hematopoietic system | 6.78e-49 | 98 |
blood island | 6.78e-49 | 98 |
immune system | 2.30e-48 | 93 |
skeletal system | 1.31e-44 | 100 |
hemolymphoid system | 7.24e-44 | 108 |
musculoskeletal system | 1.83e-24 | 167 |
lateral plate mesoderm | 1.23e-20 | 203 |
connective tissue | 3.06e-11 | 371 |
mesoderm | 3.83e-11 | 315 |
mesoderm-derived structure | 3.83e-11 | 315 |
presumptive mesoderm | 3.83e-11 | 315 |