FFCP PHASE1:Mm9::chr19:38339119..38339137,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56839|HGNC=|MCL_coexpression_id=1|UniProt=Q9JIA1|association_with_transcript=-134bp_to_ENSMUST00000087252,ENSMUST00000134832,NM_020278,uc008hji.1_5end|description=CAGE_peak_4_at_Lgi1_5end|id=chr19:38339119..38339137,+|ontology_enrichment_celltype=CL:0000117!7.74e-09!23;CL:0000337!7.74e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.94e-10,23;CL:0000337,4.94e-10,23;CL:0002614,8.08e-07,3;CL:0002610,8.47e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.12e-20!71;UBERON:0003075!1.12e-20!71;UBERON:0007284!1.12e-20!71;UBERON:0000033!1.05e-19!63;UBERON:0001049!2.17e-18!52;UBERON:0005068!2.17e-18!52;UBERON:0006241!2.17e-18!52;UBERON:0007135!2.17e-18!52;UBERON:0000955!2.93e-17!50;UBERON:0006238!2.93e-17!50;UBERON:0002020!3.24e-17!34;UBERON:0004121!1.22e-16!102;UBERON:0000924!1.22e-16!102;UBERON:0006601!1.22e-16!102;UBERON:0002616!1.66e-16!49;UBERON:0003056!3.04e-16!49;UBERON:0001017!3.31e-16!73;UBERON:0005743!3.31e-16!73;UBERON:0000073!1.01e-15!75;UBERON:0001016!1.01e-15!75;UBERON:0002791!4.41e-14!29;UBERON:0003528!4.41e-14!29;UBERON:0001893!4.41e-14!29;UBERON:0003080!4.27e-13!40;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0007811!1.76e-11!86;UBERON:0000153!9.48e-11!94;UBERON:0000956!2.68e-09!21;UBERON:0001869!2.68e-09!21;UBERON:0000203!2.68e-09!21;UBERON:0002021!3.97e-09!10;UBERON:0000411!3.97e-09!10;UBERON:0001950!3.97e-09!10;UBERON:0002619!2.30e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.93e-35,54;UBERON:0001049,2.76e-32,52;UBERON:0005068,2.76e-32,52;UBERON:0006241,2.76e-32,52;UBERON:0007135,2.76e-32,52;UBERON:0001017,5.61e-30,73;UBERON:0001016,5.79e-29,75;UBERON:0000955,6.85e-27,47;UBERON:0006238,6.85e-27,47;UBERON:0002346,1.02e-26,64;UBERON:0003075,1.02e-26,64;UBERON:0007284,1.02e-26,64;UBERON:0002020,3.10e-26,34;UBERON:0002616,3.43e-25,46;UBERON:0004121,1.22e-22,95;UBERON:0000924,1.22e-22,95;UBERON:0006601,1.22e-22,95;UBERON:0010371,1.69e-22,73;UBERON:0002021,2.16e-21,10;UBERON:0000411,2.16e-21,10;UBERON:0001950,2.16e-21,10;UBERON:0003528,4.47e-21,29;UBERON:0002791,4.47e-21,29;UBERON:0001893,4.47e-21,29;UBERON:0003080,3.14e-20,40;UBERON:0002780,1.38e-18,39;UBERON:0001890,1.38e-18,39;UBERON:0006240,1.38e-18,39;UBERON:0003056,3.76e-17,49;UBERON:0010314,2.62e-16,92;UBERON:0002619,2.03e-14,17;UBERON:0000956,1.38e-13,21;UBERON:0001869,1.38e-13,21;UBERON:0000203,1.38e-13,21;UBERON:0003076,5.81e-13,12;UBERON:0003057,5.81e-13,12;UBERON:0000025,9.18e-11,114;UBERON:0004111,1.37e-09,122;UBERON:0002950,5.61e-09,4;UBERON:0001891,5.61e-09,4;UBERON:0009616,5.61e-09,4;UBERON:0010286,5.61e-09,4;UBERON:0002420,7.37e-09,8;UBERON:0007245,7.37e-09,8;UBERON:0010009,7.37e-09,8;UBERON:0010011,7.37e-09,8;UBERON:0000454,7.37e-09,8;UBERON:0002240,1.84e-08,6;UBERON:0005174,1.84e-08,6;UBERON:0001137,1.84e-08,6;UBERON:0002038,8.08e-07,3;UBERON:0009663,8.08e-07,3;UBERON:0009661,8.08e-07,3;UBERON:0000125,8.08e-07,3;UBERON:0002308,8.08e-07,3;UBERON:0004684,8.47e-07,3;UBERON:0002275,8.47e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,1.42825492201902,1.76694832761291,0.244981598429908,0.191690942036473,0,2.20231761998777,5.2351808614927,4.45458946443106,0.395658863190582,0.731901148819277,2.08365348222704,4.74611098302348,2.25105044012672,4.5839474333043,2.94628585473668,1.99320353118744,0.745597783301202,0,0.0755715601067855,0,0,0,0,0,0,0.983110940922263,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.173485326766136,0,0,0.301445281105245,0.352766121407114,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0.441683036920787,0.484875253135222,0,5.85561594023094,2.51336048176146,0,0,0,0,14.2301107434582,12.3525162761029,1.25654352112864,16.1656617778817,11.5071955798649,15.9996794310861,7.78758062725237,0.101839363850316,0.248813941220186,0,0.420883711772948,0.130120442962704,0.459804208866946,0.720248519221397,0.753524089178575,0.408218994907967,0.12811372028485,0.468508622798644,1.81092359517311,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0,0.219550115291051,0,16.6129059365661,0.720332286654991,0,0.264450566663544,0,0,0.128867461322093,0,0,0,0,0.164698954724011,0.502670417600539,0,0.19496408711912,0,0,0,0,0.228497025219458,0,0.203651327845314,0,0.210407459670956,0.126473074248515,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,14.4495530989013,5.86058432961016,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0,0,0.404810701674894,0.292255857911312,0,9.96096080907602,0,0,0.325773918707152,0.329940245945071,0,0,0,0,0.590603785761546,0,0,0,0,0,0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| ||
|EntrezGene=56839 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9JIA1 | |||
|association_with_transcript=-134bp_to_ENSMUST00000087252,ENSMUST00000134832,NM_020278,uc008hji.1_5end | |||
|description=CAGE_peak_4_at_Lgi1_5end | |||
|id=chr19:38339119..38339137,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.74e-09!23;CL:0000337!7.74e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.94e-10,23;CL:0000337,4.94e-10,23;CL:0002614,8.08e-07,3;CL:0002610,8.47e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.12e-20!71;UBERON:0003075!1.12e-20!71;UBERON:0007284!1.12e-20!71;UBERON:0000033!1.05e-19!63;UBERON:0001049!2.17e-18!52;UBERON:0005068!2.17e-18!52;UBERON:0006241!2.17e-18!52;UBERON:0007135!2.17e-18!52;UBERON:0000955!2.93e-17!50;UBERON:0006238!2.93e-17!50;UBERON:0002020!3.24e-17!34;UBERON:0004121!1.22e-16!102;UBERON:0000924!1.22e-16!102;UBERON:0006601!1.22e-16!102;UBERON:0002616!1.66e-16!49;UBERON:0003056!3.04e-16!49;UBERON:0001017!3.31e-16!73;UBERON:0005743!3.31e-16!73;UBERON:0000073!1.01e-15!75;UBERON:0001016!1.01e-15!75;UBERON:0002791!4.41e-14!29;UBERON:0003528!4.41e-14!29;UBERON:0001893!4.41e-14!29;UBERON:0003080!4.27e-13!40;UBERON:0002780!2.36e-12!39;UBERON:0001890!2.36e-12!39;UBERON:0006240!2.36e-12!39;UBERON:0007811!1.76e-11!86;UBERON:0000153!9.48e-11!94;UBERON:0000956!2.68e-09!21;UBERON:0001869!2.68e-09!21;UBERON:0000203!2.68e-09!21;UBERON:0002021!3.97e-09!10;UBERON:0000411!3.97e-09!10;UBERON:0001950!3.97e-09!10;UBERON:0002619!2.30e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.93e-35,54;UBERON:0001049,2.76e-32,52;UBERON:0005068,2.76e-32,52;UBERON:0006241,2.76e-32,52;UBERON:0007135,2.76e-32,52;UBERON:0001017,5.61e-30,73;UBERON:0001016,5.79e-29,75;UBERON:0000955,6.85e-27,47;UBERON:0006238,6.85e-27,47;UBERON:0002346,1.02e-26,64;UBERON:0003075,1.02e-26,64;UBERON:0007284,1.02e-26,64;UBERON:0002020,3.10e-26,34;UBERON:0002616,3.43e-25,46;UBERON:0004121,1.22e-22,95;UBERON:0000924,1.22e-22,95;UBERON:0006601,1.22e-22,95;UBERON:0010371,1.69e-22,73;UBERON:0002021,2.16e-21,10;UBERON:0000411,2.16e-21,10;UBERON:0001950,2.16e-21,10;UBERON:0003528,4.47e-21,29;UBERON:0002791,4.47e-21,29;UBERON:0001893,4.47e-21,29;UBERON:0003080,3.14e-20,40;UBERON:0002780,1.38e-18,39;UBERON:0001890,1.38e-18,39;UBERON:0006240,1.38e-18,39;UBERON:0003056,3.76e-17,49;UBERON:0010314,2.62e-16,92;UBERON:0002619,2.03e-14,17;UBERON:0000956,1.38e-13,21;UBERON:0001869,1.38e-13,21;UBERON:0000203,1.38e-13,21;UBERON:0003076,5.81e-13,12;UBERON:0003057,5.81e-13,12;UBERON:0000025,9.18e-11,114;UBERON:0004111,1.37e-09,122;UBERON:0002950,5.61e-09,4;UBERON:0001891,5.61e-09,4;UBERON:0009616,5.61e-09,4;UBERON:0010286,5.61e-09,4;UBERON:0002420,7.37e-09,8;UBERON:0007245,7.37e-09,8;UBERON:0010009,7.37e-09,8;UBERON:0010011,7.37e-09,8;UBERON:0000454,7.37e-09,8;UBERON:0002240,1.84e-08,6;UBERON:0005174,1.84e-08,6;UBERON:0001137,1.84e-08,6;UBERON:0002038,8.08e-07,3;UBERON:0009663,8.08e-07,3;UBERON:0009661,8.08e-07,3;UBERON:0000125,8.08e-07,3;UBERON:0002308,8.08e-07,3;UBERON:0004684,8.47e-07,3;UBERON:0002275,8.47e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.202316460859598,1.05798195854407,0,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0.210324961351382,1.42825492201902,1.76694832761291,0.244981598429908,0.191690942036473,0,2.20231761998777,5.2351808614927,4.45458946443106,0.395658863190582,0.731901148819277,2.08365348222704,4.74611098302348,2.25105044012672,4.5839474333043,2.94628585473668,1.99320353118744,0.745597783301202,0,0.0755715601067855,0,0,0,0,0,0,0.983110940922263,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0.173485326766136,0,0,0.301445281105245,0.352766121407114,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0.441683036920787,0.484875253135222,0,5.85561594023094,2.51336048176146,0,0,0,0,14.2301107434582,12.3525162761029,1.25654352112864,16.1656617778817,11.5071955798649,15.9996794310861,7.78758062725237,0.101839363850316,0.248813941220186,0,0.420883711772948,0.130120442962704,0.459804208866946,0.720248519221397,0.753524089178575,0.408218994907967,0.12811372028485,0.468508622798644,1.81092359517311,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0,0.219550115291051,0,16.6129059365661,0.720332286654991,0,0.264450566663544,0,0,0.128867461322093,0,0,0,0,0.164698954724011,0.502670417600539,0,0.19496408711912,0,0,0,0,0.228497025219458,0,0.203651327845314,0,0.210407459670956,0.126473074248515,0,0,0,0,0,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0,0,0,0,0,0.172684981865896,0.144649058581512,0,0,0,0,14.4495530989013,5.86058432961016,0,0.252470927204373,0,0,0.215423397732799,0.238968797952552,0,0,0.404810701674894,0.292255857911312,0,9.96096080907602,0,0,0.325773918707152,0.329940245945071,0,0,0,0,0.590603785761546,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0.356737635204141,0.164549020602121,0,0,0,0.441056796109924,0,0,0,0.238744688006273,0,0.291480836629851,16.5028518789354,0,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0,0,0.518459893167171,0,0,0.448549638131936,0,0.194451188344048,0,0,0.234714477291508,0,0,0,0,0,0.405450430580328,0.102710957164827,0.129920822977795,0.179026695667481,0,0,0,0,0.0762068066549998,0,0,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0,0.214368379079066,0.501572104035363,6.7770221114048,11.5081309126794,9.73922372846974,5.67115501734169,10.2762377965596,9.82012066606611,11.4753825039407,8.10578165803597,6.79713613476307,5.69536342927002,0.103787347584177,0.399024873401031,0.512200817262403,0.972426868273176,0.209613162627982,0.367687016900028,0.44449345560323,1.23621034343337,1.28367683836726,0.505394423527595,0.50695859978048,0.754505365544305,0.655490552289177,0.384150914429216,0.804096565378586,0,0.231768651889711,0.38581844092741,0.412085900803307,0.735994600671987,0.342869252385415,0.70990322463735,0,0.436039249896986,0.658765662907314,0.676916863133412,0.73171189149109,0.526139422875686,0.271608227691724,0,0.474540072496697,0,0,0,1.35034627686799,1.99848462350357,0.935726433781634,0.859484216193193,1.14772999241306,0.882365676478062,0.463735671240843 | |||
|short_description=p4@Lgi1 | |||
}} |
Revision as of 17:30, 13 September 2013
Short description: | p4@Lgi1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lgi1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -134bp_to_ENSMUST00000087252, ENSMUST00000134832, NM_020278, uc008hji.1_5end |
EntrezGene: | Lgi1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.94e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.94e-10 | 23 |
neuron of the substantia nigra | 8.08e-07 | 3 |
raphe nuclei neuron | 8.47e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.