FFCP PHASE1:Hg19::chrX:69642952..69642968,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54857|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25974|TSSclassifier=S|UniProt=Q9HCC8|association_with_transcript=-22bp_to_ENST00000374382,uc004dyh.2,uc010nkx.1,uc010nky.1,uc011mpk.1,uc011mpl.1,uc011mpm.1_5end|coexpression_cluster_id=C4878|description=CAGE_peak_3_at_GDPD2_5end|id=chrX:69642952..69642968,+|ontology_enrichment_celltype=CL:0000047!1.77e-15!8;CL:0002322!2.44e-14!5;CL:0000540!7.44e-11!6;CL:0000031!7.44e-11!6;CL:0000404!7.44e-11!6;CL:0002319!5.70e-09!25|ontology_enrichment_celltype_v019=CL:0002322;2.10e-32;5!CL:0000047;2.54e-13;2!CL:0002321;1.11e-10;15!CL:0000540;4.97e-10;6!CL:0000404;4.97e-10;6|ontology_enrichment_celltype_v019_2=CL:0002322,2.34e-32,5;CL:0000047,1.24e-19,8;CL:0000540,2.98e-10,6;CL:0000031,2.98e-10,6;CL:0000404,2.98e-10,6|ontology_enrichment_development_v019=CL:0000031;4.97e-10;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3151;1.68e-07;1!DOID:3149;1.68e-07;1|ontology_enrichment_disease_v019_2=DOID:3151,3.17e-07,1;DOID:3149,3.17e-07,1|ontology_enrichment_uberon=UBERON:0001049!3.37e-72!57;UBERON:0005068!3.37e-72!57;UBERON:0006241!3.37e-72!57;UBERON:0007135!3.37e-72!57;UBERON:0001017!4.33e-68!82;UBERON:0005743!4.29e-67!86;UBERON:0002616!2.08e-62!59;UBERON:0000073!1.60e-59!94;UBERON:0001016!1.60e-59!94;UBERON:0000955!1.45e-53!69;UBERON:0006238!1.45e-53!69;UBERON:0003075!2.37e-53!86;UBERON:0007284!2.37e-53!86;UBERON:0002346!2.02e-50!90;UBERON:0002780!7.60e-49!41;UBERON:0001890!7.60e-49!41;UBERON:0006240!7.60e-49!41;UBERON:0001893!1.67e-48!34;UBERON:0002020!2.37e-48!34;UBERON:0003528!2.37e-48!34;UBERON:0003080!1.70e-47!42;UBERON:0002791!1.92e-46!33;UBERON:0001869!3.47e-44!32;UBERON:0003056!2.30e-39!61;UBERON:0000033!4.86e-33!123;UBERON:0000956!5.57e-33!25;UBERON:0000203!5.57e-33!25;UBERON:0000153!1.89e-32!129;UBERON:0007811!1.89e-32!129;UBERON:0004121!2.05e-31!169;UBERON:0002619!1.62e-30!22;UBERON:0000924!2.29e-30!173;UBERON:0006601!2.29e-30!173;UBERON:0001950!9.12e-30!20;UBERON:0007023!4.14e-27!115;UBERON:0003076!2.21e-25!15;UBERON:0003057!2.21e-25!15;UBERON:0004733!6.02e-23!12;UBERON:0002028!6.02e-23!12;UBERON:0007277!6.02e-23!12;UBERON:0004732!5.55e-21!13;UBERON:0002308!7.65e-17!9;UBERON:0000125!7.65e-17!9;UBERON:0002680!6.72e-16!9;UBERON:0001895!6.72e-16!9;UBERON:0010092!6.72e-16!9;UBERON:0002298!1.02e-14!8;UBERON:0000200!1.56e-14!6;UBERON:0000064!3.54e-14!219;UBERON:0000025!6.51e-14!194;UBERON:0002420!5.27e-13!9;UBERON:0007245!5.27e-13!9;UBERON:0010009!5.27e-13!9;UBERON:0010011!5.27e-13!9;UBERON:0000454!5.27e-13!9;UBERON:0009663!1.45e-12!7;UBERON:0001871!1.03e-10!7;UBERON:0000477!4.34e-10!286;UBERON:0002037!7.12e-10!6;UBERON:0006215!7.12e-10!6;UBERON:0004111!1.07e-09!241;UBERON:0001896!6.29e-09!3;UBERON:0005290!6.29e-09!3;UBERON:0010096!6.29e-09!3;UBERON:0000483!7.89e-09!309;UBERON:0000119!1.25e-08!312;UBERON:0002021!3.18e-08!5;UBERON:0002771!4.45e-08!3;UBERON:0006331!5.68e-08!3;UBERON:0001872!6.56e-08!5;UBERON:0000988!7.80e-08!3;UBERON:0000922!5.85e-07!612;UBERON:0000475!8.42e-07!365|ontology_enrichment_uberon_v019=UBERON:0001896;4.24e-19;3!UBERON:0005290;4.24e-19;3!UBERON:0002106;6.17e-10;3!UBERON:0002298;8.01e-10;6!UBERON:0000922;1.93e-09;49!UBERON:0000073;6.09e-09;53!UBERON:0002616;6.09e-09;53!UBERON:0004733;2.08e-08;12!UBERON:0002028;2.08e-08;12!UBERON:0004732;9.04e-08;13!UBERON:0001882;1.68e-07;1!UBERON:0002336;1.68e-07;1!UBERON:0003112;1.68e-07;1!UBERON:0011215;1.68e-07;1!UBERON:0001018;1.68e-07;1!UBERON:0011158;1.68e-07;1!UBERON:0002473;1.68e-07;1!UBERON:0005340;1.68e-07;1!UBERON:0003544;1.68e-07;1!UBERON:0005970;1.68e-07;1!UBERON:0002316;1.68e-07;1!UBERON:0001020;1.68e-07;1!UBERON:0003128;1.68e-07;1!UBERON:0005403;1.68e-07;1!UBERON:0002437;1.68e-07;1!UBERON:0001703;1.68e-07;1!UBERON:0002241;1.68e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001896,2.75e-19,3;UBERON:0005290,2.75e-19,3;UBERON:0010096,2.75e-19,3;UBERON:0001017,3.15e-18,81;UBERON:0001016,4.17e-16,89;UBERON:0001049,2.00e-13,56;UBERON:0005068,2.00e-13,56;UBERON:0006241,2.00e-13,56;UBERON:0007135,2.00e-13,56;UBERON:0000073,7.06e-12,53;UBERON:0002616,7.06e-12,53;UBERON:0003076,2.58e-10,15;UBERON:0003057,2.58e-10,15;UBERON:0003075,4.32e-10,82;UBERON:0007284,4.32e-10,82;UBERON:0002106,6.19e-10,3;UBERON:0004854,6.19e-10,3;UBERON:0009034,6.19e-10,3;UBERON:0002095,6.19e-10,3;UBERON:0004782,6.19e-10,3;UBERON:0003281,6.19e-10,3;UBERON:0009664,6.19e-10,3;UBERON:0002296,6.19e-10,3;UBERON:0005602,6.19e-10,3;UBERON:0001179,6.19e-10,3;UBERON:0006293,6.19e-10,3;UBERON:0002298,6.48e-10,6;UBERON:0002346,1.63e-09,86;UBERON:0000955,1.03e-08,68;UBERON:0006238,1.03e-08,68;UBERON:0004733,1.71e-08,12;UBERON:0002028,1.71e-08,12;UBERON:0007277,1.71e-08,12;UBERON:0004121,6.37e-08,171;UBERON:0000924,6.37e-08,171;UBERON:0006601,6.37e-08,171;UBERON:0011216,6.40e-08,223;UBERON:0004732,7.55e-08,13;UBERON:0002336,9.44e-08,1;UBERON:0011215,9.44e-08,1;UBERON:0001018,9.44e-08,1;UBERON:0002473,9.44e-08,1;UBERON:0005340,9.44e-08,1;UBERON:0003544,9.44e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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54857 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25974 | |||
|TSSclassifier=S | |||
|UniProt=Q9HCC8 | |||
|association_with_transcript=-22bp_to_ENST00000374382,uc004dyh.2,uc010nkx.1,uc010nky.1,uc011mpk.1,uc011mpl.1,uc011mpm.1_5end | |||
|coexpression_cluster_id=C4878 | |||
|description=CAGE_peak_3_at_GDPD2_5end | |||
|id=chrX:69642952..69642968,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.77e-15!8;CL:0002322!2.44e-14!5;CL:0000540!7.44e-11!6;CL:0000031!7.44e-11!6;CL:0000404!7.44e-11!6;CL:0002319!5.70e-09!25 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.10e-32;5!CL:0000047;2.54e-13;2!CL:0002321;1.11e-10;15!CL:0000540;4.97e-10;6!CL:0000404;4.97e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.34e-32,5;CL:0000047,1.24e-19,8;CL:0000540,2.98e-10,6;CL:0000031,2.98e-10,6;CL:0000404,2.98e-10,6 | |||
|ontology_enrichment_development_v019=CL:0000031;4.97e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;1.68e-07;1!DOID:3149;1.68e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.17e-07,1;DOID:3149,3.17e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!3.37e-72!57;UBERON:0005068!3.37e-72!57;UBERON:0006241!3.37e-72!57;UBERON:0007135!3.37e-72!57;UBERON:0001017!4.33e-68!82;UBERON:0005743!4.29e-67!86;UBERON:0002616!2.08e-62!59;UBERON:0000073!1.60e-59!94;UBERON:0001016!1.60e-59!94;UBERON:0000955!1.45e-53!69;UBERON:0006238!1.45e-53!69;UBERON:0003075!2.37e-53!86;UBERON:0007284!2.37e-53!86;UBERON:0002346!2.02e-50!90;UBERON:0002780!7.60e-49!41;UBERON:0001890!7.60e-49!41;UBERON:0006240!7.60e-49!41;UBERON:0001893!1.67e-48!34;UBERON:0002020!2.37e-48!34;UBERON:0003528!2.37e-48!34;UBERON:0003080!1.70e-47!42;UBERON:0002791!1.92e-46!33;UBERON:0001869!3.47e-44!32;UBERON:0003056!2.30e-39!61;UBERON:0000033!4.86e-33!123;UBERON:0000956!5.57e-33!25;UBERON:0000203!5.57e-33!25;UBERON:0000153!1.89e-32!129;UBERON:0007811!1.89e-32!129;UBERON:0004121!2.05e-31!169;UBERON:0002619!1.62e-30!22;UBERON:0000924!2.29e-30!173;UBERON:0006601!2.29e-30!173;UBERON:0001950!9.12e-30!20;UBERON:0007023!4.14e-27!115;UBERON:0003076!2.21e-25!15;UBERON:0003057!2.21e-25!15;UBERON:0004733!6.02e-23!12;UBERON:0002028!6.02e-23!12;UBERON:0007277!6.02e-23!12;UBERON:0004732!5.55e-21!13;UBERON:0002308!7.65e-17!9;UBERON:0000125!7.65e-17!9;UBERON:0002680!6.72e-16!9;UBERON:0001895!6.72e-16!9;UBERON:0010092!6.72e-16!9;UBERON:0002298!1.02e-14!8;UBERON:0000200!1.56e-14!6;UBERON:0000064!3.54e-14!219;UBERON:0000025!6.51e-14!194;UBERON:0002420!5.27e-13!9;UBERON:0007245!5.27e-13!9;UBERON:0010009!5.27e-13!9;UBERON:0010011!5.27e-13!9;UBERON:0000454!5.27e-13!9;UBERON:0009663!1.45e-12!7;UBERON:0001871!1.03e-10!7;UBERON:0000477!4.34e-10!286;UBERON:0002037!7.12e-10!6;UBERON:0006215!7.12e-10!6;UBERON:0004111!1.07e-09!241;UBERON:0001896!6.29e-09!3;UBERON:0005290!6.29e-09!3;UBERON:0010096!6.29e-09!3;UBERON:0000483!7.89e-09!309;UBERON:0000119!1.25e-08!312;UBERON:0002021!3.18e-08!5;UBERON:0002771!4.45e-08!3;UBERON:0006331!5.68e-08!3;UBERON:0001872!6.56e-08!5;UBERON:0000988!7.80e-08!3;UBERON:0000922!5.85e-07!612;UBERON:0000475!8.42e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.24e-19;3!UBERON:0005290;4.24e-19;3!UBERON:0002106;6.17e-10;3!UBERON:0002298;8.01e-10;6!UBERON:0000922;1.93e-09;49!UBERON:0000073;6.09e-09;53!UBERON:0002616;6.09e-09;53!UBERON:0004733;2.08e-08;12!UBERON:0002028;2.08e-08;12!UBERON:0004732;9.04e-08;13!UBERON:0001882;1.68e-07;1!UBERON:0002336;1.68e-07;1!UBERON:0003112;1.68e-07;1!UBERON:0011215;1.68e-07;1!UBERON:0001018;1.68e-07;1!UBERON:0011158;1.68e-07;1!UBERON:0002473;1.68e-07;1!UBERON:0005340;1.68e-07;1!UBERON:0003544;1.68e-07;1!UBERON:0005970;1.68e-07;1!UBERON:0002316;1.68e-07;1!UBERON:0001020;1.68e-07;1!UBERON:0003128;1.68e-07;1!UBERON:0005403;1.68e-07;1!UBERON:0002437;1.68e-07;1!UBERON:0001703;1.68e-07;1!UBERON:0002241;1.68e-07;1 | |||
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|short_description=p3@GDPD2 | |||
}} |
Revision as of 12:24, 14 September 2013
Short description: | p3@GDPD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GDPD2_5end |
Coexpression cluster: | C4878_spleen_H9_HES3GFP_iPS_hippocampus_spinal_Neural |
Association with transcript: | -22bp_to_ENST00000374382, uc004dyh.2, uc010nkx.1, uc010nky.1, uc011mpk.1, uc011mpl.1, uc011mpm.1_5end |
EntrezGene: | GDPD2 |
HGNC: | 25974 |
UniProt: | Q9HCC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.34e-32 | 5 |
neuronal stem cell | 1.24e-19 | 8 |
neuron | 2.98e-10 | 6 |
neuroblast | 2.98e-10 | 6 |
electrically signaling cell | 2.98e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.17e-07 | 1 |
keratoacanthoma | 3.17e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.