FFCP PHASE1:Hg19::chr4:93224904..93224918,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:93224904..93224918,+ | |||
|coexpression_cluster_id=C1084 | |||
|description=CAGE_peak_at_chr4:93224904..93224918,+ | |description=CAGE_peak_at_chr4:93224904..93224918,+ | ||
|id=chr4:93224904..93224918,+ | |id=chr4:93224904..93224918,+ | ||
|ontology_enrichment_celltype=CL:0002322!5.73e-12!5;CL:0000540!2.67e-07!6;CL:0000031!2.67e-07!6;CL:0000404!2.67e-07!6 | |ontology_enrichment_celltype=CL:0002322!5.73e-12!5;CL:0000540!2.67e-07!6;CL:0000031!2.67e-07!6;CL:0000404!2.67e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002553;8.61e-11;1!CL:0000540;3.25e-07;6!CL:0000404;3.25e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,6.14e-11,1;CL:0000540,3.80e-07,6;CL:0000031,3.80e-07,6;CL:0000404,3.80e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.09e-30;3!UBERON:0010122;7.90e-20;2!CL:0000031;3.25e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.13e-58!82;UBERON:0001049!1.32e-57!57;UBERON:0005068!1.32e-57!57;UBERON:0006241!1.32e-57!57;UBERON:0007135!1.32e-57!57;UBERON:0005743!2.56e-57!86;UBERON:0000073!1.07e-50!94;UBERON:0001016!1.07e-50!94;UBERON:0000955!4.62e-47!69;UBERON:0006238!4.62e-47!69;UBERON:0002616!3.14e-46!59;UBERON:0002020!5.15e-43!34;UBERON:0003528!5.15e-43!34;UBERON:0003075!7.92e-43!86;UBERON:0007284!7.92e-43!86;UBERON:0001893!8.70e-43!34;UBERON:0002346!1.86e-42!90;UBERON:0002791!9.92e-41!33;UBERON:0002780!2.14e-40!41;UBERON:0001890!2.14e-40!41;UBERON:0006240!2.14e-40!41;UBERON:0003080!2.94e-39!42;UBERON:0001869!8.86e-39!32;UBERON:0002619!1.55e-31!22;UBERON:0001950!6.14e-31!20;UBERON:0007023!4.23e-29!115;UBERON:0000924!4.27e-29!173;UBERON:0006601!4.27e-29!173;UBERON:0004121!8.59e-29!169;UBERON:0000033!1.03e-28!123;UBERON:0003056!1.59e-28!61;UBERON:0000956!2.71e-27!25;UBERON:0000203!2.71e-27!25;UBERON:0000153!7.99e-27!129;UBERON:0007811!7.99e-27!129;UBERON:0003076!4.68e-19!15;UBERON:0003057!4.68e-19!15;UBERON:0002308!9.20e-18!9;UBERON:0000125!9.20e-18!9;UBERON:0002420!9.40e-18!9;UBERON:0007245!9.40e-18!9;UBERON:0010009!9.40e-18!9;UBERON:0010011!9.40e-18!9;UBERON:0000454!9.40e-18!9;UBERON:0001871!1.89e-15!7;UBERON:0000025!2.82e-14!194;UBERON:0009663!3.47e-13!7;UBERON:0004733!5.20e-13!12;UBERON:0002028!5.20e-13!12;UBERON:0007277!5.20e-13!12;UBERON:0004732!6.96e-12!13;UBERON:0000369!1.54e-11!4;UBERON:0002435!1.54e-11!4;UBERON:0000204!1.54e-11!4;UBERON:0010082!1.54e-11!4;UBERON:0002298!8.83e-11!8;UBERON:0000200!1.48e-10!6;UBERON:0002680!2.49e-10!9;UBERON:0001895!2.49e-10!9;UBERON:0010092!2.49e-10!9;UBERON:0004111!6.34e-10!241;UBERON:0005383!4.02e-09!3;UBERON:0005382!4.02e-09!3;UBERON:0000349!7.03e-09!5;UBERON:0002771!1.73e-08!3;UBERON:0000483!1.86e-08!309;UBERON:0002240!2.40e-08!3;UBERON:0006331!2.72e-08!3;UBERON:0000988!2.78e-08!3;UBERON:0000119!2.93e-08!312;UBERON:0001872!4.14e-08!5;UBERON:0002021!5.19e-08!5;UBERON:0000064!8.96e-08!219;UBERON:0000477!3.11e-07!286;UBERON:0000922!3.12e-07!612;UBERON:0000475!3.71e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000369;8.05e-38;4!UBERON:0002435;8.05e-38;4!UBERON:0000204;8.05e-38;4!UBERON:0005383;7.93e-29;3!UBERON:0005382;7.93e-29;3!UBERON:0002791;4.15e-26;32!UBERON:0000125;4.78e-26;9!UBERON:0002308;4.78e-26;9!UBERON:0003528;1.21e-25;34!UBERON:0002020;1.21e-25;34!UBERON:0001869;5.73e-25;32!UBERON:0009663;8.96e-22;7!UBERON:0001893;1.30e-21;34!UBERON:0001873;7.90e-20;2!UBERON:0000073;2.04e-18;53!UBERON:0002616;2.04e-18;53!UBERON:0002680;1.29e-17;9!UBERON:0001895;1.29e-17;9!UBERON:0000955;1.41e-17;68!UBERON:0002420;5.29e-17;9!UBERON:0007245;5.29e-17;9!UBERON:0010009;5.29e-17;9!UBERON:0010011;5.29e-17;9!UBERON:0000454;5.29e-17;9!UBERON:0002780;8.76e-16;41!UBERON:0001890;8.76e-16;41!UBERON:0002037;1.93e-15;6!UBERON:0001017;4.62e-15;75!UBERON:0002619;1.90e-14;22!UBERON:0004733;2.86e-13;12!UBERON:0002028;2.86e-13;12!UBERON:0000956;9.82e-13;25!UBERON:0000203;9.82e-13;25!UBERON:0004732;2.89e-12;13!UBERON:0001950;3.20e-11;20!UBERON:0001882;8.61e-11;1!UBERON:0002022;8.61e-11;1!UBERON:0005795;8.61e-11;1!UBERON:0001874;8.61e-11;1!UBERON:0005403;8.61e-11;1!UBERON:0001016;7.18e-10;83!UBERON:0000349;1.72e-08;5!UBERON:0000200;3.25e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.83e-38,4;UBERON:0002435,2.83e-38,4;UBERON:0000204,2.83e-38,4;UBERON:0010082,2.83e-38,4;UBERON:0000073,2.70e-32,53;UBERON:0002616,2.70e-32,53;UBERON:0003528,6.97e-31,34;UBERON:0002020,6.97e-31,34;UBERON:0001017,1.74e-30,81;UBERON:0001049,1.75e-30,56;UBERON:0005068,1.75e-30,56;UBERON:0006241,1.75e-30,56;UBERON:0007135,1.75e-30,56;UBERON:0005383,2.40e-29,3;UBERON:0005382,2.40e-29,3;UBERON:0000955,2.88e-28,68;UBERON:0006238,2.88e-28,68;UBERON:0001016,2.96e-27,89;UBERON:0002791,4.09e-27,32;UBERON:0001869,4.09e-27,32;UBERON:0000125,2.76e-26,9;UBERON:0002308,2.76e-26,9;UBERON:0001893,1.73e-25,34;UBERON:0009663,4.96e-22,7;UBERON:0002780,5.21e-21,41;UBERON:0001890,5.21e-21,41;UBERON:0003080,5.21e-21,41;UBERON:0006240,5.21e-21,41;UBERON:0003075,2.97e-20,82;UBERON:0007284,2.97e-20,82;UBERON:0001873,3.67e-20,2;UBERON:0010122,3.67e-20,2;UBERON:0002346,3.20e-19,86;UBERON:0002680,1.27e-17,9;UBERON:0001895,1.27e-17,9;UBERON:0010092,1.27e-17,9;UBERON:0002420,3.35e-17,9;UBERON:0007245,3.35e-17,9;UBERON:0010009,3.35e-17,9;UBERON:0010011,3.35e-17,9;UBERON:0000454,3.35e-17,9;UBERON:0010371,1.52e-15,104;UBERON:0002037,1.84e-15,6;UBERON:0006215,1.84e-15,6;UBERON:0002619,2.52e-14,22;UBERON:0003056,8.96e-14,61;UBERON:0004733,2.82e-13,12;UBERON:0002028,2.82e-13,12;UBERON:0007277,2.82e-13,12;UBERON:0004121,3.60e-13,171;UBERON:0000924,3.60e-13,171;UBERON:0006601,3.60e-13,171;UBERON:0000956,1.25e-12,25;UBERON:0000203,1.25e-12,25;UBERON:0011216,2.55e-12,223;UBERON:0004732,2.85e-12,13;UBERON:0010314,8.55e-12,132;UBERON:0001950,3.58e-11,20;UBERON:0001874,5.57e-11,1;UBERON:0001882,9.97e-11,1;UBERON:0005403,9.97e-11,1;UBERON:0003076,1.17e-10,15;UBERON:0003057,1.17e-10,15;UBERON:0002022,1.33e-10,1;UBERON:0007023,3.49e-10,114;UBERON:0000025,1.07e-08,192;UBERON:0000349,2.33e-08,5;UBERON:0000200,3.80e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.464775771478074,0.414644220061482,0.504641701751257,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.984685914873589,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,2.90799823828566,0.371072392647405,0,0,0,0,0,0,0,0,0,0,1.77148277162768,1.5677537021303,7.62908681585416,3.87027409759286,2.95547618953547,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741412462787447,0.802577647298789,0.702793337176017,0,0,0,0,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,1.0896272488926,1.12527203925513,1.51293380256957,0.83088067605837,0,0,1.21499113316049,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42211251997706,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,1.58634144372552,1.001527445652,0,0.887432412294818,0.558867626472451,0.138348634936231,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,1.41304295212211,0,0.319267718114302,0.205116364240755,1.76450187355203,0.484100767249525,0.807378228159255,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.607838261565552,0,0.620060389503552,0.570742291745161,0.546974809018219,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.271878931907327,0.591954962065642,0,0,0,1.72827148907602,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.679914901909147,1.30905207102113,0,0,0,0,0,0.655593431782173,0,0,0,0.18378979906969,0,0,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22068853494722,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.464775771478074,0.414644220061482,0.504641701751257,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.984685914873589,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,2.90799823828566,0.371072392647405,0,0,0,0,0,0,0,0,0,0,1.77148277162768,1.5677537021303,7.62908681585416,3.87027409759286,2.95547618953547,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741412462787447,0.802577647298789,0.702793337176017,0,0,0,0,0,2.14250933141343,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.886351143382302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,1.0896272488926,1.12527203925513,1.51293380256957,0.83088067605837,0,0,1.21499113316049,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42211251997706,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,1.58634144372552,1.001527445652,0,0.887432412294818,0.558867626472451,0.138348634936231,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,1.41304295212211,0,0.319267718114302,0.205116364240755,1.76450187355203,0.484100767249525,0.807378228159255,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.607838261565552,0,0.620060389503552,0.570742291745161,0.546974809018219,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.271878931907327,0.591954962065642,0,0,0,1.72827148907602,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.679914901909147,1.30905207102113,0,0,0,0,0,0.655593431782173,0,0,0,0.18378979906969,0,0,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22068853494722,0,0,0 | ||
|short_description=p@chr4:93224904..93224918,+ | |short_description=p@chr4:93224904..93224918,+ | ||
}} | }} |
Latest revision as of 08:04, 30 July 2015
Short description: | p@chr4:93224904..93224918, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:93224904..93224918, + |
Coexpression cluster: | C1084_cerebellum_iPS_HES3GFP_nonsmall_occipital_parietal_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 6.14e-11 | 1 |
neuron | 3.80e-07 | 6 |
neuroblast | 3.80e-07 | 6 |
electrically signaling cell | 3.80e-07 | 6 |