FFCP PHASE1:Hg19::chr7:18535844..18535853,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9734 | |EntrezGene=9734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14065 | |HGNC=14065 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKV0 | |UniProt=Q9UKV0 | ||
|association_with_transcript=-31bp_to_ENST00000401921,NM_058176,NM_178425,uc003suh.2,uc003sui.2,uc003suj.2,uc010kud.1,uc011jyd.1_5end | |association_with_transcript=-31bp_to_ENST00000401921,NM_058176,NM_178425,uc003suh.2,uc003sui.2,uc003suj.2,uc010kud.1,uc011jyd.1_5end | ||
|cluster_id=chr7:18535844..18535853,+ | |||
|coexpression_cluster_id=C1991 | |coexpression_cluster_id=C1991 | ||
|description=CAGE_peak_35_at_HDAC9_5end | |description=CAGE_peak_35_at_HDAC9_5end | ||
|id=chr7:18535844..18535853,+ | |id=chr7:18535844..18535853,+ | ||
|ontology_enrichment_celltype=CL:0002319!7.27e-10!25;CL:0000095!4.14e-07!17;CL:0000123!4.14e-07!17 | |ontology_enrichment_celltype=CL:0002319!7.27e-10!25;CL:0000095!4.14e-07!17;CL:0000123!4.14e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.07e-17;2!CL:0002521;2.19e-12;3!CL:0000138;7.17e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002521,2.31e-12,3;CL:0000058,7.17e-07,6;CL:0000138,7.17e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.05e-34;1!UBERON:0003056;2.89e-12;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.84e-34;1!DOID:4549;1.84e-34;1!DOID:5861;1.84e-34;1!DOID:6496;1.84e-34;1!DOID:201;7.17e-07;6!DOID:0060100;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.84e-34,1;DOID:4549,1.84e-34,1;DOID:5861,1.84e-34,1;DOID:6496,1.84e-34,1;DOID:201,7.17e-07,6;DOID:0060100,7.17e-07,6 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000941;7.05e-34;1!UBERON:0001785;7.05e-34;1!UBERON:0002464;7.05e-34;1!UBERON:0004904;7.05e-34;1!UBERON:0001021;7.05e-34;1!UBERON:0001905;1.07e-17;2!UBERON:0003714;1.07e-17;2!UBERON:0005162;1.07e-17;2!UBERON:0000122;1.07e-17;2!UBERON:0002757;1.07e-17;2!UBERON:0010134;1.07e-17;2!UBERON:0005408;1.07e-17;2!UBERON:0001899;1.07e-17;2!UBERON:0002418;1.85e-12;3!UBERON:0004755;1.85e-12;3!UBERON:0002190;2.19e-12;3!UBERON:0003296;1.57e-09;4!UBERON:0010133;1.57e-09;4!UBERON:0002784;1.57e-09;4!UBERON:0002072;5.92e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,5.05e-34,1;UBERON:0001785,5.05e-34,1;UBERON:0002464,5.05e-34,1;UBERON:0004904,5.05e-34,1;UBERON:0001021,5.05e-34,1;UBERON:0003902,5.05e-34,1;UBERON:0005425,5.05e-34,1;UBERON:0003714,9.07e-18,2;UBERON:0005162,9.07e-18,2;UBERON:0000122,9.07e-18,2;UBERON:0001905,1.07e-17,2;UBERON:0002757,1.07e-17,2;UBERON:0010134,1.07e-17,2;UBERON:0005408,1.07e-17,2;UBERON:0001899,1.07e-17,2;UBERON:0002418,1.85e-12,3;UBERON:0004755,1.85e-12,3;UBERON:0002190,2.31e-12,3;UBERON:0001781,1.44e-09,4;UBERON:0003296,1.57e-09,4;UBERON:0010133,1.57e-09,4;UBERON:0002784,1.57e-09,4;UBERON:0002072,6.13e-08,5;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6 | |||
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| ||
|short_description=p35@HDAC9 | |short_description=p35@HDAC9 | ||
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Latest revision as of 14:18, 17 September 2015
Short description: | p35@HDAC9 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_HDAC9_5end |
Coexpression cluster: | C1991_small_extraskeletal_non_acute_lymphoma_neuroblastoma_pineal |
Association with transcript: | -31bp_to_ENST00000401921, NM_058176, NM_178425, uc003suh.2, uc003sui.2, uc003suj.2, uc010kud.1, uc011jyd.1_5end |
EntrezGene: | HDAC9 |
HGNC: | 14065 |
UniProt: | Q9UKV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subcutaneous fat cell | 2.31e-12 | 3 |
chondroblast | 7.17e-07 | 6 |
chondrocyte | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 5.05e-34 | 1 |
cranial nerve | 5.05e-34 | 1 |
nerve trunk | 5.05e-34 | 1 |
nerve connecting eye with brain | 5.05e-34 | 1 |
nerve | 5.05e-34 | 1 |
retinal neural layer | 5.05e-34 | 1 |
presumptive neural retina | 5.05e-34 | 1 |
neural tissue | 9.07e-18 | 2 |
multi cell component structure | 9.07e-18 | 2 |
neuron projection bundle | 9.07e-18 | 2 |
pineal body | 1.07e-17 | 2 |
regional part of epithalamus | 1.07e-17 | 2 |
secretory circumventricular organ | 1.07e-17 | 2 |
circumventricular organ | 1.07e-17 | 2 |
epithalamus | 1.07e-17 | 2 |
cartilage tissue | 1.85e-12 | 3 |
skeletal tissue | 1.85e-12 | 3 |
subcutaneous adipose tissue | 2.31e-12 | 3 |
layer of retina | 1.44e-09 | 4 |
gland of diencephalon | 1.57e-09 | 4 |
neuroendocrine gland | 1.57e-09 | 4 |
regional part of diencephalon | 1.57e-09 | 4 |
hypodermis | 6.13e-08 | 5 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.84e-34 | 1 |
extraosseous chondrosarcoma | 1.84e-34 | 1 |
myxoid chondrosarcoma | 1.84e-34 | 1 |
extraskeletal myxoid chondrosarcoma | 1.84e-34 | 1 |
connective tissue cancer | 7.17e-07 | 6 |
musculoskeletal system cancer | 7.17e-07 | 6 |