FFCP PHASE1:Hg19::chr5:110560072..110560106,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=814 | |EntrezGene=814 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1464 | |HGNC=1464 | ||
|TSSclassifier=strong | |||
|UniProt=D6RCD6,D6REY7 | |UniProt=D6RCD6,D6REY7 | ||
|association_with_transcript=0bp_to_ENST00000504544,ENST00000509408,ENST00000514007,ENST00000515231,uc003kpf.2,uc010jbv.2_5end | |association_with_transcript=0bp_to_ENST00000504544,ENST00000509408,ENST00000514007,ENST00000515231,uc003kpf.2,uc010jbv.2_5end | ||
|cluster_id=chr5:110560072..110560106,+ | |||
|coexpression_cluster_id=C1473 | |coexpression_cluster_id=C1473 | ||
|description=CAGE_peak_1_at_CAMK4_5end | |description=CAGE_peak_1_at_CAMK4_5end | ||
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|ontology_enrichment_celltype=CL:0000084!8.09e-15!25;CL:0000827!8.09e-15!25;CL:0000542!1.10e-13!53;CL:0000051!1.10e-13!53;CL:0000838!2.55e-13!52;CL:0000791!4.08e-12!18;CL:0000789!4.08e-12!18;CL:0002420!4.08e-12!18;CL:0002419!4.08e-12!18;CL:0000790!4.08e-12!18;CL:0000625!3.92e-08!11 | |ontology_enrichment_celltype=CL:0000084!8.09e-15!25;CL:0000827!8.09e-15!25;CL:0000542!1.10e-13!53;CL:0000051!1.10e-13!53;CL:0000838!2.55e-13!52;CL:0000791!4.08e-12!18;CL:0000789!4.08e-12!18;CL:0002420!4.08e-12!18;CL:0002419!4.08e-12!18;CL:0000790!4.08e-12!18;CL:0000625!3.92e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.08e-15;25!CL:0000791;1.84e-12;18!CL:0000789;1.84e-12;18!CL:0002419;1.84e-12;18!CL:0000625;2.38e-08;11!CL:0000542;1.64e-07;53 | |ontology_enrichment_celltype_v019=CL:0000084;3.08e-15;25!CL:0000791;1.84e-12;18!CL:0000789;1.84e-12;18!CL:0002419;1.84e-12;18!CL:0000625;2.38e-08;11!CL:0000542;1.64e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.20e-15,25;CL:0000827,3.20e-15,25;CL:0000542,1.41e-14,53;CL:0000051,1.41e-14,53;CL:0000838,3.38e-14,52;CL:0000791,1.95e-12,18;CL:0000789,1.95e-12,18;CL:0002420,1.95e-12,18;CL:0002419,1.95e-12,18;CL:0000790,1.95e-12,18;CL:0000625,2.47e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.84e-12;18!CL:0000051;1.64e-07;53 | |ontology_enrichment_development_v019=CL:0000790;1.84e-12;18!CL:0000051;1.64e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.71e-20!94;UBERON:0001016!1.71e-20!94;UBERON:0001017!1.83e-20!82;UBERON:0005743!9.97e-20!86;UBERON:0001049!1.23e-17!57;UBERON:0005068!1.23e-17!57;UBERON:0006241!1.23e-17!57;UBERON:0007135!1.23e-17!57;UBERON:0000955!4.01e-17!69;UBERON:0006238!4.01e-17!69;UBERON:0000153!4.11e-16!129;UBERON:0007811!4.11e-16!129;UBERON:0002780!6.47e-16!41;UBERON:0001890!6.47e-16!41;UBERON:0006240!6.47e-16!41;UBERON:0003056!1.20e-15!61;UBERON:0002616!1.21e-15!59;UBERON:0003075!1.38e-15!86;UBERON:0007284!1.38e-15!86;UBERON:0003080!3.24e-15!42;UBERON:0001869!6.69e-15!32;UBERON:0004121!7.25e-15!169;UBERON:0001893!1.78e-14!34;UBERON:0002020!2.59e-14!34;UBERON:0003528!2.59e-14!34;UBERON:0000033!3.24e-14!123;UBERON:0002791!4.30e-14!33;UBERON:0002346!4.37e-14!90;UBERON:0000924!6.44e-14!173;UBERON:0006601!6.44e-14!173;UBERON:0007023!1.11e-12!115;UBERON:0000956!2.30e-11!25;UBERON:0000203!2.30e-11!25;UBERON:0002619!3.75e-11!22;UBERON:0001950!2.13e-10!20;UBERON:0000178!4.88e-07!15;UBERON:0000179!4.88e-07!15;UBERON:0000463!4.88e-07!15 | |ontology_enrichment_uberon=UBERON:0000073!1.71e-20!94;UBERON:0001016!1.71e-20!94;UBERON:0001017!1.83e-20!82;UBERON:0005743!9.97e-20!86;UBERON:0001049!1.23e-17!57;UBERON:0005068!1.23e-17!57;UBERON:0006241!1.23e-17!57;UBERON:0007135!1.23e-17!57;UBERON:0000955!4.01e-17!69;UBERON:0006238!4.01e-17!69;UBERON:0000153!4.11e-16!129;UBERON:0007811!4.11e-16!129;UBERON:0002780!6.47e-16!41;UBERON:0001890!6.47e-16!41;UBERON:0006240!6.47e-16!41;UBERON:0003056!1.20e-15!61;UBERON:0002616!1.21e-15!59;UBERON:0003075!1.38e-15!86;UBERON:0007284!1.38e-15!86;UBERON:0003080!3.24e-15!42;UBERON:0001869!6.69e-15!32;UBERON:0004121!7.25e-15!169;UBERON:0001893!1.78e-14!34;UBERON:0002020!2.59e-14!34;UBERON:0003528!2.59e-14!34;UBERON:0000033!3.24e-14!123;UBERON:0002791!4.30e-14!33;UBERON:0002346!4.37e-14!90;UBERON:0000924!6.44e-14!173;UBERON:0006601!6.44e-14!173;UBERON:0007023!1.11e-12!115;UBERON:0000956!2.30e-11!25;UBERON:0000203!2.30e-11!25;UBERON:0002619!3.75e-11!22;UBERON:0001950!2.13e-10!20;UBERON:0000178!4.88e-07!15;UBERON:0000179!4.88e-07!15;UBERON:0000463!4.88e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.55e-14;32!UBERON:0002791;2.65e-13;32!UBERON:0001893;4.31e-13;34!UBERON:0003528;4.40e-13;34!UBERON:0002020;4.40e-13;34!UBERON:0002780;5.61e-12;41!UBERON:0001890;5.61e-12;41!UBERON:0000956;1.06e-11;25!UBERON:0000203;1.06e-11;25!UBERON:0002619;1.81e-11;22!UBERON:0001950;1.10e-10;20!UBERON:0000073;1.47e-10;53!UBERON:0002616;1.47e-10;53!UBERON:0000955;6.18e-09;68!UBERON:0001017;2.55e-08;75!UBERON:0001016;4.22e-08;83!UBERON:0000178;3.44e-07;15!UBERON:0000179;3.44e-07;15!UBERON:0000463;3.44e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0001869;4.55e-14;32!UBERON:0002791;2.65e-13;32!UBERON:0001893;4.31e-13;34!UBERON:0003528;4.40e-13;34!UBERON:0002020;4.40e-13;34!UBERON:0002780;5.61e-12;41!UBERON:0001890;5.61e-12;41!UBERON:0000956;1.06e-11;25!UBERON:0000203;1.06e-11;25!UBERON:0002619;1.81e-11;22!UBERON:0001950;1.10e-10;20!UBERON:0000073;1.47e-10;53!UBERON:0002616;1.47e-10;53!UBERON:0000955;6.18e-09;68!UBERON:0001017;2.55e-08;75!UBERON:0001016;4.22e-08;83!UBERON:0000178;3.44e-07;15!UBERON:0000179;3.44e-07;15!UBERON:0000463;3.44e-07;15 | ||
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| ||
|short_description=p1@CAMK4 | |short_description=p1@CAMK4 | ||
}} | }} |
Latest revision as of 17:09, 19 September 2015
Short description: | p1@CAMK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAMK4_5end |
Coexpression cluster: | C1473_CD4_cerebellum_thymus_neuroblastoma_CD8_Peripheral_caudate |
Association with transcript: | 0bp_to_ENST00000504544, ENST00000509408, ENST00000514007, ENST00000515231, uc003kpf.2, uc010jbv.2_5end |
EntrezGene: | CAMK4 |
HGNC: | 1464 |
UniProt: | D6RCD6D6REY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.20e-15 | 25 |
pro-T cell | 3.20e-15 | 25 |
lymphocyte | 1.41e-14 | 53 |
common lymphoid progenitor | 1.41e-14 | 53 |
lymphoid lineage restricted progenitor cell | 3.38e-14 | 52 |
mature alpha-beta T cell | 1.95e-12 | 18 |
alpha-beta T cell | 1.95e-12 | 18 |
immature T cell | 1.95e-12 | 18 |
mature T cell | 1.95e-12 | 18 |
immature alpha-beta T cell | 1.95e-12 | 18 |
CD8-positive, alpha-beta T cell | 2.47e-08 | 11 |