FFCP PHASE1:Hg19::chr1:204042233..204042249,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9580 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11192 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UN79,Q5SXX2 | |||
|association_with_transcript=0bp_to_ENST00000367203,NM_005686,uc001hal.2,uc001ham.2_5end | |||
|cluster_id=chr1:204042233..204042249,+ | |||
|coexpression_cluster_id=C3925 | |||
|description=CAGE_peak_1_at_SOX13_5end | |||
|id=chr1:204042233..204042249,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.24e-24!254;CL:0000223!1.18e-07!59;CL:0000148!6.78e-07!10;CL:0000541!6.78e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;6.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.86e-24,253;CL:0000223,9.83e-08,58;CL:0000148,6.34e-07,10;CL:0000541,6.34e-07,10;CL:0000076,9.69e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.11e-14!106;DOID:0050687!9.17e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.10e-14,106;DOID:0050687,8.51e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.94e-19!115;UBERON:0000468!4.77e-18!659;UBERON:0004111!5.86e-16!241;UBERON:0000467!3.24e-14!625;UBERON:0000480!6.67e-14!626;UBERON:0000922!1.28e-12!612;UBERON:0004119!2.51e-12!169;UBERON:0000925!2.51e-12!169;UBERON:0006595!2.51e-12!169;UBERON:0000064!2.60e-12!219;UBERON:0000062!2.84e-12!511;UBERON:0000477!4.77e-12!286;UBERON:0004921!4.99e-12!129;UBERON:0004185!4.99e-12!129;UBERON:0000025!7.20e-12!194;UBERON:0001007!8.66e-11!155;UBERON:0001555!8.66e-11!155;UBERON:0007026!8.66e-11!155;UBERON:0000483!9.94e-11!309;UBERON:0002050!1.80e-10!605;UBERON:0005423!1.80e-10!605;UBERON:0000466!2.15e-10!126;UBERON:0000119!3.15e-10!312;UBERON:0000923!3.31e-10!604;UBERON:0005291!3.31e-10!604;UBERON:0006598!3.31e-10!604;UBERON:0002532!3.31e-10!604;UBERON:0000077!7.42e-10!130;UBERON:0000475!3.47e-09!365;UBERON:0001049!4.62e-09!57;UBERON:0005068!4.62e-09!57;UBERON:0006241!4.62e-09!57;UBERON:0007135!4.62e-09!57;UBERON:0000481!8.67e-09!347;UBERON:0001041!2.33e-08!98;UBERON:0005743!2.66e-08!86;UBERON:0001017!2.90e-08!82;UBERON:0000464!3.85e-08!104;UBERON:0005177!7.82e-08!107;UBERON:0004121!2.81e-07!169;UBERON:0003075!7.05e-07!86;UBERON:0007284!7.05e-07!86;UBERON:0009569!8.68e-07!113;UBERON:0000073!9.12e-07!94;UBERON:0001016!9.12e-07!94;UBERON:0002616!9.40e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.07e-19,114;UBERON:0004111,5.07e-15,240;UBERON:0011216,1.25e-13,223;UBERON:0000025,2.47e-11,192;UBERON:0004921,1.05e-10,118;UBERON:0000922,1.21e-10,592;UBERON:0004119,1.35e-10,160;UBERON:0000925,1.35e-10,160;UBERON:0006595,1.35e-10,160;UBERON:0000483,2.92e-10,306;UBERON:0000119,9.02e-10,309;UBERON:0001007,4.16e-09,145;UBERON:0001555,4.16e-09,145;UBERON:0007026,4.16e-09,145;UBERON:0001049,1.05e-08,56;UBERON:0005068,1.05e-08,56;UBERON:0006241,1.05e-08,56;UBERON:0007135,1.05e-08,56;UBERON:0005423,3.36e-08,581;UBERON:0002050,6.79e-08,564;UBERON:0001017,7.85e-08,81;UBERON:0000923,9.09e-08,560;UBERON:0010316,9.09e-08,560;UBERON:0005291,9.09e-08,560;UBERON:0006598,9.09e-08,560;UBERON:0010317,9.09e-08,560;UBERON:0002532,9.09e-08,560;UBERON:0000073,1.14e-07,53;UBERON:0002616,1.14e-07,53;UBERON:0005177,1.18e-07,101;UBERON:0010371,1.94e-07,104;UBERON:0001041,3.90e-07,87;UBERON:0009569,7.60e-07,112 | |||
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| |||
|short_description=p1@SOX13 | |||
}} |
Latest revision as of 00:11, 20 September 2015
Short description: | p1@SOX13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX13_5end |
Coexpression cluster: | C3925_Mast_testicular_breast_choriocarcinoma_Mesenchymal_gastrointestinal_smallcell |
Association with transcript: | 0bp_to_ENST00000367203, NM_005686, uc001hal.2, uc001ham.2_5end |
EntrezGene: | SOX13 |
HGNC: | 11192 |
UniProt: | Q9UN79Q5SXX2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.86e-24 | 253 |
endodermal cell | 9.83e-08 | 58 |
melanocyte | 6.34e-07 | 10 |
melanoblast | 6.34e-07 | 10 |
squamous epithelial cell | 9.69e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.07e-19 | 114 |
anatomical conduit | 5.07e-15 | 240 |
organ system subdivision | 1.25e-13 | 223 |
tube | 2.47e-11 | 192 |
subdivision of digestive tract | 1.05e-10 | 118 |
embryo | 1.21e-10 | 592 |
endoderm-derived structure | 1.35e-10 | 160 |
endoderm | 1.35e-10 | 160 |
presumptive endoderm | 1.35e-10 | 160 |
epithelium | 2.92e-10 | 306 |
cell layer | 9.02e-10 | 309 |
digestive system | 4.16e-09 | 145 |
digestive tract | 4.16e-09 | 145 |
primitive gut | 4.16e-09 | 145 |
neural tube | 1.05e-08 | 56 |
neural rod | 1.05e-08 | 56 |
future spinal cord | 1.05e-08 | 56 |
neural keel | 1.05e-08 | 56 |
developing anatomical structure | 3.36e-08 | 581 |
embryonic structure | 6.79e-08 | 564 |
central nervous system | 7.85e-08 | 81 |
germ layer | 9.09e-08 | 560 |
germ layer / neural crest | 9.09e-08 | 560 |
embryonic tissue | 9.09e-08 | 560 |
presumptive structure | 9.09e-08 | 560 |
germ layer / neural crest derived structure | 9.09e-08 | 560 |
epiblast (generic) | 9.09e-08 | 560 |
regional part of nervous system | 1.14e-07 | 53 |
regional part of brain | 1.14e-07 | 53 |
trunk region element | 1.18e-07 | 101 |
ecto-epithelium | 1.94e-07 | 104 |
foregut | 3.90e-07 | 87 |
subdivision of trunk | 7.60e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.10e-14 | 106 |
cell type cancer | 8.51e-09 | 143 |