FFCP PHASE1:Hg19::chr1:220960195..220960288,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64757 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26189 | |||
|TSSclassifier=strong | |||
|UniProt=Q5VT66 | |||
|association_with_transcript=94bp_to_ENST00000366910_5end | |||
|cluster_id=chr1:220960195..220960288,+ | |||
|coexpression_cluster_id=C29 | |||
|description=CAGE_peak_1_at_MARC1_5end | |||
|id=chr1:220960195..220960288,+ | |||
|ontology_enrichment_celltype=CL:0000860!8.50e-11!45;CL:0000766!1.95e-09!76;CL:0002057!3.30e-09!42;CL:0002194!6.09e-09!63;CL:0000576!6.09e-09!63;CL:0000040!6.09e-09!63;CL:0000559!6.09e-09!63;CL:0002009!4.19e-08!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.22e-09;33!CL:0002057;3.22e-09;33!CL:0000473;4.14e-07;39!CL:0000234;4.14e-07;39!CL:0000136;9.93e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.47e-09,42;CL:0002057,5.47e-09,42;CL:0000766,3.58e-08,72;CL:0000473,4.60e-08,48;CL:0000234,4.60e-08,48;CL:0002194,1.72e-07,59;CL:0000576,1.72e-07,59;CL:0000040,1.72e-07,59;CL:0000559,1.72e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;4.15e-07;42 | |||
|ontology_enrichment_disease=DOID:305!3.27e-12!106;DOID:0050687!8.53e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.40e-13,106;DOID:0050687,4.50e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.16e-20!115;UBERON:0000468!7.82e-19!659;UBERON:0000922!1.05e-18!612;UBERON:0000923!1.98e-16!604;UBERON:0005291!1.98e-16!604;UBERON:0006598!1.98e-16!604;UBERON:0002532!1.98e-16!604;UBERON:0002050!2.23e-16!605;UBERON:0005423!2.23e-16!605;UBERON:0000467!2.88e-15!625;UBERON:0000480!6.08e-15!626;UBERON:0000062!1.63e-14!511;UBERON:0000064!8.55e-09!219;UBERON:0004921!9.59e-09!129;UBERON:0004185!9.59e-09!129;UBERON:0005743!1.21e-08!86;UBERON:0001007!1.29e-08!155;UBERON:0001555!1.29e-08!155;UBERON:0007026!1.29e-08!155;UBERON:0004119!4.38e-08!169;UBERON:0000925!4.38e-08!169;UBERON:0006595!4.38e-08!169;UBERON:0001017!9.65e-08!82;UBERON:0000073!1.15e-07!94;UBERON:0001016!1.15e-07!94;UBERON:0001049!1.50e-07!57;UBERON:0005068!1.50e-07!57;UBERON:0006241!1.50e-07!57;UBERON:0007135!1.50e-07!57;UBERON:0001737!2.02e-07!9;UBERON:0000481!2.56e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.00e-07;9!UBERON:0001557;1.00e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.31e-20,114;UBERON:0011216,4.33e-16,223;UBERON:0000922,1.47e-15,592;UBERON:0005423,1.91e-14,581;UBERON:0002050,1.49e-12,564;UBERON:0000923,1.57e-12,560;UBERON:0010316,1.57e-12,560;UBERON:0005291,1.57e-12,560;UBERON:0006598,1.57e-12,560;UBERON:0010317,1.57e-12,560;UBERON:0002532,1.57e-12,560;UBERON:0004921,2.84e-10,118;UBERON:0001007,2.59e-09,145;UBERON:0001555,2.59e-09,145;UBERON:0007026,2.59e-09,145;UBERON:0004119,1.56e-08,160;UBERON:0000925,1.56e-08,160;UBERON:0006595,1.56e-08,160;UBERON:0001737,1.03e-07,9;UBERON:0001017,1.09e-07,81;UBERON:0001049,2.17e-07,56;UBERON:0005068,2.17e-07,56;UBERON:0006241,2.17e-07,56;UBERON:0007135,2.17e-07,56;UBERON:0001041,3.83e-07,87;UBERON:0000073,7.14e-07,53;UBERON:0002616,7.14e-07,53;UBERON:0008947,7.35e-07,38;UBERON:0003258,7.35e-07,38;UBERON:0003075,7.66e-07,82;UBERON:0007284,7.66e-07,82;UBERON:0001016,8.82e-07,89 | |||
|phase1_expression=5.08699461957559,65.5147603106408,19.0288445529561,15.0109947529696,33.5220820820466,0.872338524100369,144.380930555937,15.1612769622439,91.1537842417436,5.6518805395347,9.76921635161399,1.52908960491121,2.11013582582763,2.59909341216098,4.63956326019082,2.6893005858071,0.602694528023977,0,0,3.44738962615006,3.87601313364081,2.5076377718247,11.1632034981112,12.4555726816325,12.5542639594803,0.993374274723366,0.985207073399349,1.10195093839151,17.3080281813518,16.8884935162774,23.2224184974114,7.35536979583142,4.819294700452,1.47901604066715,0,0,16.1480241634166,28.2537658351257,18.2495447197829,17.7948913986998,2.91090116511902,1.29557466407592,1.03030227053675,9.01469080433301,9.82477453590904,7.27752183563449,10.9241647345672,7.40102198439286,8.6717783850629,10.6446185159196,14.6011602721587,10.4052181150977,13.1003358679915,14.2006630388442,17.6054432572644,12.8004790888971,10.643339852256,4.71919317334678,7.34601341690166,11.8743740018155,6.39337125799041,12.5343494070952,13.1646014030277,7.2458207590558,11.3181603065148,11.3477044938228,6.85104473895132,14.5724225848911,14.6015217157656,9.1219314776149,13.3187890579341,15.8359383474653,9.49387162322653,1.26753171787165,2.97646019951061,9.01532175686016,41.4492648930567,38.4452845674256,54.4859738903102,0.570025487482497,0.79566670879636,0.730656615058536,0,1.09227722252426,0.889509253863555,2.98711155796555,0.400395987036012,0.574752439954483,1.32208974556972,0,0,1.17447437874188,0,0,1.12101712596307,20.0171904429059,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637130828648193,0,0,1.95747654801105,1.15187950038977,1.24930726552346,2.8413270245282,0.821127996921047,0,0,0,0,2.68280343881454,1.40648818027883,0.361439152384566,0,2.462390822334,0.795285947051099,0,4.91581049253153,3.54767035940102,5.62142628436007,5.50112117090393,2.91436230634034,8.15725774125745,5.51730569212962,7.13931922926996,5.31831842075461,0.715471872916026,0.571994910780128,0.371457501329565,1.39133685156694,0.860234595106124,0.694281003215189,0,0.838998872419812,0.275118041940067,0.417989933073621,3.10100111003195,0.71153252537342,2.00832367658802,1.20848795132744,2.28081631715554,2.4406205754817,0.367663080345869,0,3.12549048994279,2.46982309888787,4.95490514126618,1.53316637465883,0,0.732806975721629,13.1780417436063,27.1446184903828,3.05265836499774,0.496971951695318,0.379891534993739,0.132409180813219,0.573673241497627,1.06400514659507,0.560677600142307,1.06748995729705,0.98667019366864,0.622422070799533,0.404132016209064,0.163461903113459,0.454072282934794,1.15235184896,0.70296429550139,0.312160076830321,0.570471821544449,0.448346041655403,4.22764195117554,3.23745888736263,4.3539750077697,0.61246251376468,2.45668634623536,3.20309921644873,1.18800285728205,1.7308685049499,0.910161361938026,0,1.5150250255866,1.87677779807946,2.21651292387346,0.877955241761676,0.919463387397059,2.70428506031874,1.36118619792025,1.07633781413317,1.92201649936711,0.635795703478686,0.900273288253207,0.618315175430633,0.257640540045629,1.11670113798954,0.675105328965065,0.389748020644795,0.252433774244115,1.01254888506529,0.323292113637624,1.77504796258307,0.705264687593482,0.508681776931463,1.54608682530637,3.81844568827169,2.86804595389004,18.4180296255689,20.4095843215087,12.3165579441689,9.1221728413526,19.4287055174234,17.153935876564,0,0.643240938192885,1.38134921352481,0.928735856063958,2.88751792667834,116.177277639127,119.357960575296,122.433603180809,107.977799305014,111.33639593122,105.348154885327,101.662806352764,95.5598535160435,99.2647664921687,1.4763109092493,0,1.6462960453256,1.47008711385542,64.6450677591337,114.990784351282,42.5368732810611,0,46.2436528922107,3.43135620597051,0.109750285408626,0,1.3068766413512,3.88871469665824,0.651616610620649,0,4.3299402607582,6.60803308357938,2.11335649624479,0.866198686566443,0,0.951270761172991,9.4824527755113,6.00940313466411,1.72351904261178,7.95614501473408,3.71577905721821,5.62403003920662,1.17587489739202,2.26840155587818,0.716468181622786,1.74380363108377,1.53353071666084,0,0,0.207328115540772,0.288239906833923,0.12624243342638,0.63497894292169,0.763976851116555,3.51652341630141,6.84289784090821,0.616964956219941,3.90445975197093,0.857479297891735,0.224262168690721,0.87192013766656,0.07333828582095,0.517086863031111,0,0.845302752556,0.531876233169741,0,4.11531798819427,0,3.19706614819319,2.7165818795048,2.17048642156577,4.93944202068461,0.977208552881205,0.710783897485092,1.58390374586686,0.904318131178758,0,0.699810938274399,2.43247561282381,2.51128545716063,0,0.479249710983165,1.14861935834114,0,1.01346914667305,1.43833425785268,1.79060963239896,0,0.591092280605782,0,0.128343036279748,12.7047312111232,11.712586847186,2.31986643833309,7.03568314404265,3.82763250991898,39.6973722692007,29.9161459204025,68.7929752303819,3.43536176813592,4.00136416847742,2.98391526069709,0.207970861530807,0.535286966391485,1.10391690523754,0.117141414992713,1.50473049863859,4.5481500811197,8.27784570340039,1.32845119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| |||
|short_description=p1@MARC1 | |||
}} |
Latest revision as of 06:53, 25 September 2015
Short description: | p1@MARC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MARC1_5end |
Coexpression cluster: | C29_mature_adipose_Adipocyte_breast_Lymphatic_vein_heart |
Association with transcript: | 94bp_to_ENST00000366910_5end |
EntrezGene: | MARC1 |
HGNC: | 26189 |
UniProt: | Q5VT66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.47e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.47e-09 | 42 |
myeloid leukocyte | 3.58e-08 | 72 |
defensive cell | 4.60e-08 | 48 |
phagocyte | 4.60e-08 | 48 |
monopoietic cell | 1.72e-07 | 59 |
monocyte | 1.72e-07 | 59 |
monoblast | 1.72e-07 | 59 |
promonocyte | 1.72e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.31e-20 | 114 |
organ system subdivision | 4.33e-16 | 223 |
embryo | 1.47e-15 | 592 |
developing anatomical structure | 1.91e-14 | 581 |
embryonic structure | 1.49e-12 | 564 |
germ layer | 1.57e-12 | 560 |
germ layer / neural crest | 1.57e-12 | 560 |
embryonic tissue | 1.57e-12 | 560 |
presumptive structure | 1.57e-12 | 560 |
germ layer / neural crest derived structure | 1.57e-12 | 560 |
epiblast (generic) | 1.57e-12 | 560 |
subdivision of digestive tract | 2.84e-10 | 118 |
digestive system | 2.59e-09 | 145 |
digestive tract | 2.59e-09 | 145 |
primitive gut | 2.59e-09 | 145 |
endoderm-derived structure | 1.56e-08 | 160 |
endoderm | 1.56e-08 | 160 |
presumptive endoderm | 1.56e-08 | 160 |
larynx | 1.03e-07 | 9 |
central nervous system | 1.09e-07 | 81 |
neural tube | 2.17e-07 | 56 |
neural rod | 2.17e-07 | 56 |
future spinal cord | 2.17e-07 | 56 |
neural keel | 2.17e-07 | 56 |
foregut | 3.83e-07 | 87 |
regional part of nervous system | 7.14e-07 | 53 |
regional part of brain | 7.14e-07 | 53 |
respiratory primordium | 7.35e-07 | 38 |
endoderm of foregut | 7.35e-07 | 38 |
neural plate | 7.66e-07 | 82 |
presumptive neural plate | 7.66e-07 | 82 |
nervous system | 8.82e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.40e-13 | 106 |
cell type cancer | 4.50e-09 | 143 |