FFCP PHASE1:Mm9::chr8:58419207..58419248,+: Difference between revisions
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{{FFCP|EntrezGene=110304|HGNC=|MCL_coexpression_id=20|UniProt=|association_with_transcript=-8bp_to_ENSMUST00000164020_5end|description=CAGE_peak_1_at_Glra3_5end|id=chr8:58419207..58419248,+|ontology_enrichment_celltype=CL:0000117!8.13e-13!23;CL:0000337!8.13e-13!23;CL:0000540!3.07e-07!33;CL:0000047!3.07e-07!33;CL:0000031!3.07e-07!33;CL:0000404!3.07e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-16,23;CL:0000337,2.44e-16,23;CL:0000540,2.10e-10,33;CL:0000047,2.10e-10,33;CL:0000031,2.10e-10,33;CL:0000404,2.10e-10,33;CL:0002610,2.14e-08,3;CL:0000393,2.54e-08,39;CL:0000211,2.54e-08,39;CL:0002614,2.81e-08,3;CL:0002612,2.52e-07,3;CL:0002319,2.91e-07,43;CL:0000221,4.98e-07,44;CL:0000133,4.98e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.73e-22!52;UBERON:0005068!2.73e-22!52;UBERON:0006241!2.73e-22!52;UBERON:0007135!2.73e-22!52;UBERON:0000033!7.32e-22!63;UBERON:0000955!1.85e-20!50;UBERON:0006238!1.85e-20!50;UBERON:0002346!1.95e-20!71;UBERON:0003075!1.95e-20!71;UBERON:0007284!1.95e-20!71;UBERON:0001017!2.46e-20!73;UBERON:0005743!2.46e-20!73;UBERON:0002616!7.34e-20!49;UBERON:0002020!1.64e-19!34;UBERON:0000073!2.10e-19!75;UBERON:0001016!2.10e-19!75;UBERON:0003056!1.62e-18!49;UBERON:0004121!2.31e-16!102;UBERON:0000924!2.31e-16!102;UBERON:0006601!2.31e-16!102;UBERON:0003080!6.38e-15!40;UBERON:0002791!8.10e-15!29;UBERON:0003528!8.10e-15!29;UBERON:0001893!8.10e-15!29;UBERON:0002780!6.68e-14!39;UBERON:0001890!6.68e-14!39;UBERON:0006240!6.68e-14!39;UBERON:0007811!4.19e-13!86;UBERON:0002021!1.51e-11!10;UBERON:0000411!1.51e-11!10;UBERON:0001950!1.51e-11!10;UBERON:0000153!6.86e-11!94;UBERON:0002420!4.37e-09!8;UBERON:0007245!4.37e-09!8;UBERON:0010009!4.37e-09!8;UBERON:0010011!4.37e-09!8;UBERON:0000454!4.37e-09!8;UBERON:0002619!5.00e-09!17;UBERON:0002298!1.30e-08!6;UBERON:0003076!2.83e-08!12;UBERON:0003057!2.83e-08!12;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002240!2.18e-07!6;UBERON:0005174!2.18e-07!6;UBERON:0001137!2.18e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.18e-37,54;UBERON:0001049,3.87e-33,52;UBERON:0005068,3.87e-33,52;UBERON:0006241,3.87e-33,52;UBERON:0007135,3.87e-33,52;UBERON:0002020,3.49e-32,34;UBERON:0002346,9.95e-30,64;UBERON:0003075,9.95e-30,64;UBERON:0007284,9.95e-30,64;UBERON:0001017,1.50e-29,73;UBERON:0001016,1.47e-28,75;UBERON:0010371,3.69e-25,73;UBERON:0004121,3.92e-24,95;UBERON:0000924,3.92e-24,95;UBERON:0006601,3.92e-24,95;UBERON:0003528,1.82e-23,29;UBERON:0002791,1.82e-23,29;UBERON:0001893,1.82e-23,29;UBERON:0002616,2.24e-23,46;UBERON:0000955,9.41e-23,47;UBERON:0006238,9.41e-23,47;UBERON:0003080,1.41e-22,40;UBERON:0003056,3.11e-21,49;UBERON:0002780,9.34e-21,39;UBERON:0001890,9.34e-21,39;UBERON:0006240,9.34e-21,39;UBERON:0002021,1.11e-20,10;UBERON:0000411,1.11e-20,10;UBERON:0001950,1.11e-20,10;UBERON:0010314,1.91e-18,92;UBERON:0002619,1.07e-13,17;UBERON:0000956,6.47e-13,21;UBERON:0001869,6.47e-13,21;UBERON:0000203,6.47e-13,21;UBERON:0002420,9.17e-13,8;UBERON:0007245,9.17e-13,8;UBERON:0010009,9.17e-13,8;UBERON:0010011,9.17e-13,8;UBERON:0000454,9.17e-13,8;UBERON:0002240,1.00e-12,6;UBERON:0005174,1.00e-12,6;UBERON:0001137,1.00e-12,6;UBERON:0000025,2.67e-11,114;UBERON:0003076,6.08e-11,12;UBERON:0003057,6.08e-11,12;UBERON:0001948,1.12e-10,5;UBERON:0002315,1.12e-10,5;UBERON:0002950,1.18e-10,4;UBERON:0001891,1.18e-10,4;UBERON:0009616,1.18e-10,4;UBERON:0010286,1.18e-10,4;UBERON:0004111,4.20e-10,122;UBERON:0004684,2.14e-08,3;UBERON:0002275,2.14e-08,3;UBERON:0002038,2.81e-08,3;UBERON:0009663,2.81e-08,3;UBERON:0009661,2.81e-08,3;UBERON:0000125,2.81e-08,3;UBERON:0002308,2.81e-08,3;UBERON:0002257,2.52e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,0.633831403506179,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.32521124570968,0.122490799214954,0,0,7.70811166995721,10.4703617229854,12.7493422602682,0.527545150920775,1.09785172322892,1.04182674111352,5.30447698102624,11.8180148106653,11.7654650788144,5.00868595305235,7.83044244395066,1.1183966749518,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,22.4685959107234,3.66000482254901,1.25654352112864,7.30062144807561,5.11430914660661,9.55825004973976,8.92326946872667,0,0,0,1.89397670297827,0,0,0.180062129805349,0.30140963567143,0.272145996605311,0.640568601424249,0.749613796477831,4.9153640440413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.83028244932856,8.79087649441524,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,5.37733375830478,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95326289831947,4.14292712856459,3.43737308063638,4.81188910562325,2.74033007908257,6.7985450765073,3.37511250115903,5.85417564191487,3.17199686288943,4.65984280576638,0,0,0,0.243106717068294,0,0.919217542250071,0.44449345560323,0.412070114477788,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.655490552289177,0.448176066834085,0.746661096422973,0,0.463537303779422,0.38581844092741,0.824171801606613,0.441596760403192,1.37147700954166,0.532427418478012,0,0.290692833264657,0.564656282491984,0.676916863133412,0.365855945745545,0,0.407412341537585,0,0.355905054372522,0.197008964751127,0.409231043169689,1.08455788830176,0,0.999242311751784,0.233931608445408,1.07435527024149,0.191288332068843,0.441182838239031,0.231867835620421|short_description=p1@Glra3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=110304 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-8bp_to_ENSMUST00000164020_5end | |||
|cluster_id=chr8:58419207..58419248,+ | |||
|description=CAGE_peak_1_at_Glra3_5end | |||
|id=chr8:58419207..58419248,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.13e-13!23;CL:0000337!8.13e-13!23;CL:0000540!3.07e-07!33;CL:0000047!3.07e-07!33;CL:0000031!3.07e-07!33;CL:0000404!3.07e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.44e-16,23;CL:0000337,2.44e-16,23;CL:0000540,2.10e-10,33;CL:0000047,2.10e-10,33;CL:0000031,2.10e-10,33;CL:0000404,2.10e-10,33;CL:0002610,2.14e-08,3;CL:0000393,2.54e-08,39;CL:0000211,2.54e-08,39;CL:0002614,2.81e-08,3;CL:0002612,2.52e-07,3;CL:0002319,2.91e-07,43;CL:0000221,4.98e-07,44;CL:0000133,4.98e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.73e-22!52;UBERON:0005068!2.73e-22!52;UBERON:0006241!2.73e-22!52;UBERON:0007135!2.73e-22!52;UBERON:0000033!7.32e-22!63;UBERON:0000955!1.85e-20!50;UBERON:0006238!1.85e-20!50;UBERON:0002346!1.95e-20!71;UBERON:0003075!1.95e-20!71;UBERON:0007284!1.95e-20!71;UBERON:0001017!2.46e-20!73;UBERON:0005743!2.46e-20!73;UBERON:0002616!7.34e-20!49;UBERON:0002020!1.64e-19!34;UBERON:0000073!2.10e-19!75;UBERON:0001016!2.10e-19!75;UBERON:0003056!1.62e-18!49;UBERON:0004121!2.31e-16!102;UBERON:0000924!2.31e-16!102;UBERON:0006601!2.31e-16!102;UBERON:0003080!6.38e-15!40;UBERON:0002791!8.10e-15!29;UBERON:0003528!8.10e-15!29;UBERON:0001893!8.10e-15!29;UBERON:0002780!6.68e-14!39;UBERON:0001890!6.68e-14!39;UBERON:0006240!6.68e-14!39;UBERON:0007811!4.19e-13!86;UBERON:0002021!1.51e-11!10;UBERON:0000411!1.51e-11!10;UBERON:0001950!1.51e-11!10;UBERON:0000153!6.86e-11!94;UBERON:0002420!4.37e-09!8;UBERON:0007245!4.37e-09!8;UBERON:0010009!4.37e-09!8;UBERON:0010011!4.37e-09!8;UBERON:0000454!4.37e-09!8;UBERON:0002619!5.00e-09!17;UBERON:0002298!1.30e-08!6;UBERON:0003076!2.83e-08!12;UBERON:0003057!2.83e-08!12;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002240!2.18e-07!6;UBERON:0005174!2.18e-07!6;UBERON:0001137!2.18e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.18e-37,54;UBERON:0001049,3.87e-33,52;UBERON:0005068,3.87e-33,52;UBERON:0006241,3.87e-33,52;UBERON:0007135,3.87e-33,52;UBERON:0002020,3.49e-32,34;UBERON:0002346,9.95e-30,64;UBERON:0003075,9.95e-30,64;UBERON:0007284,9.95e-30,64;UBERON:0001017,1.50e-29,73;UBERON:0001016,1.47e-28,75;UBERON:0010371,3.69e-25,73;UBERON:0004121,3.92e-24,95;UBERON:0000924,3.92e-24,95;UBERON:0006601,3.92e-24,95;UBERON:0003528,1.82e-23,29;UBERON:0002791,1.82e-23,29;UBERON:0001893,1.82e-23,29;UBERON:0002616,2.24e-23,46;UBERON:0000955,9.41e-23,47;UBERON:0006238,9.41e-23,47;UBERON:0003080,1.41e-22,40;UBERON:0003056,3.11e-21,49;UBERON:0002780,9.34e-21,39;UBERON:0001890,9.34e-21,39;UBERON:0006240,9.34e-21,39;UBERON:0002021,1.11e-20,10;UBERON:0000411,1.11e-20,10;UBERON:0001950,1.11e-20,10;UBERON:0010314,1.91e-18,92;UBERON:0002619,1.07e-13,17;UBERON:0000956,6.47e-13,21;UBERON:0001869,6.47e-13,21;UBERON:0000203,6.47e-13,21;UBERON:0002420,9.17e-13,8;UBERON:0007245,9.17e-13,8;UBERON:0010009,9.17e-13,8;UBERON:0010011,9.17e-13,8;UBERON:0000454,9.17e-13,8;UBERON:0002240,1.00e-12,6;UBERON:0005174,1.00e-12,6;UBERON:0001137,1.00e-12,6;UBERON:0000025,2.67e-11,114;UBERON:0003076,6.08e-11,12;UBERON:0003057,6.08e-11,12;UBERON:0001948,1.12e-10,5;UBERON:0002315,1.12e-10,5;UBERON:0002950,1.18e-10,4;UBERON:0001891,1.18e-10,4;UBERON:0009616,1.18e-10,4;UBERON:0010286,1.18e-10,4;UBERON:0004111,4.20e-10,122;UBERON:0004684,2.14e-08,3;UBERON:0002275,2.14e-08,3;UBERON:0002038,2.81e-08,3;UBERON:0009663,2.81e-08,3;UBERON:0009661,2.81e-08,3;UBERON:0000125,2.81e-08,3;UBERON:0002308,2.81e-08,3;UBERON:0002257,2.52e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404632921719196,1.5869729378161,0.633831403506179,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.32521124570968,0.122490799214954,0,0,7.70811166995721,10.4703617229854,12.7493422602682,0.527545150920775,1.09785172322892,1.04182674111352,5.30447698102624,11.8180148106653,11.7654650788144,5.00868595305235,7.83044244395066,1.1183966749518,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,22.4685959107234,3.66000482254901,1.25654352112864,7.30062144807561,5.11430914660661,9.55825004973976,8.92326946872667,0,0,0,1.89397670297827,0,0,0.180062129805349,0.30140963567143,0.272145996605311,0.640568601424249,0.749613796477831,4.9153640440413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.83028244932856,8.79087649441524,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,5.37733375830478,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95326289831947,4.14292712856459,3.43737308063638,4.81188910562325,2.74033007908257,6.7985450765073,3.37511250115903,5.85417564191487,3.17199686288943,4.65984280576638,0,0,0,0.243106717068294,0,0.919217542250071,0.44449345560323,0.412070114477788,0.64183841918363,0.505394423527595,0.50695859978048,0.188626341386076,0.655490552289177,0.448176066834085,0.746661096422973,0,0.463537303779422,0.38581844092741,0.824171801606613,0.441596760403192,1.37147700954166,0.532427418478012,0,0.290692833264657,0.564656282491984,0.676916863133412,0.365855945745545,0,0.407412341537585,0,0.355905054372522,0.197008964751127,0.409231043169689,1.08455788830176,0,0.999242311751784,0.233931608445408,1.07435527024149,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p1@Glra3 | |||
}} |
Latest revision as of 15:28, 25 September 2015
Short description: | p1@Glra3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Glra3_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -8bp_to_ENSMUST00000164020_5end |
EntrezGene: | Glra3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.44e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.44e-16 | 23 |
neuron | 2.10e-10 | 33 |
neuronal stem cell | 2.10e-10 | 33 |
neuroblast | 2.10e-10 | 33 |
electrically signaling cell | 2.10e-10 | 33 |
raphe nuclei neuron | 2.14e-08 | 3 |
electrically responsive cell | 2.54e-08 | 39 |
electrically active cell | 2.54e-08 | 39 |
neuron of the substantia nigra | 2.81e-08 | 3 |
neuron of the ventral spinal cord | 2.52e-07 | 3 |
neural cell | 2.91e-07 | 43 |
ectodermal cell | 4.98e-07 | 44 |
neurectodermal cell | 4.98e-07 | 44 |