FFCP PHASE1:Mm9::chr10:84218895..84218909,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71137 | |EntrezGene=71137 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2593 | |MCL_coexpression_id=2593 | ||
|TSSclassifier=NA | |||
|UniProt=Q7TNK1 | |UniProt=Q7TNK1 | ||
|association_with_transcript=88bp_to_ENSMUST00000060397_5end | |association_with_transcript=88bp_to_ENSMUST00000060397_5end | ||
|cluster_id=chr10:84218895..84218909,+ | |||
|description=CAGE_peak_1_at_Rfx4_5end | |description=CAGE_peak_1_at_Rfx4_5end | ||
|id=chr10:84218895..84218909,+ | |id=chr10:84218895..84218909,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.14e-18!23;CL:0000337!1.14e-18!23;CL:0002319!5.93e-16!43;CL:0000221!2.62e-15!44;CL:0000133!2.62e-15!44;CL:0000055!5.05e-12!50;CL:0000540!2.70e-10!33;CL:0000047!2.70e-10!33;CL:0000031!2.70e-10!33;CL:0000404!2.70e-10!33;CL:0002453!3.04e-08!8;CL:0000393!1.75e-07!39;CL:0000211!1.75e-07!39;CL:0000333!4.07e-07!10;CL:0000095!4.07e-07!10;CL:0000243!4.07e-07!10;CL:0000123!4.07e-07!10;CL:0000125!4.07e-07!10;CL:0000030!4.07e-07!10;CL:0000339!4.07e-07!10 | |ontology_enrichment_celltype=CL:0000117!1.14e-18!23;CL:0000337!1.14e-18!23;CL:0002319!5.93e-16!43;CL:0000221!2.62e-15!44;CL:0000133!2.62e-15!44;CL:0000055!5.05e-12!50;CL:0000540!2.70e-10!33;CL:0000047!2.70e-10!33;CL:0000031!2.70e-10!33;CL:0000404!2.70e-10!33;CL:0002453!3.04e-08!8;CL:0000393!1.75e-07!39;CL:0000211!1.75e-07!39;CL:0000333!4.07e-07!10;CL:0000095!4.07e-07!10;CL:0000243!4.07e-07!10;CL:0000123!4.07e-07!10;CL:0000125!4.07e-07!10;CL:0000030!4.07e-07!10;CL:0000339!4.07e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-21,23;CL:0000337,1.63e-21,23;CL:0002319,4.78e-19,43;CL:0000221,2.22e-18,44;CL:0000133,2.22e-18,44;CL:0000540,9.78e-13,33;CL:0000047,9.78e-13,33;CL:0000031,9.78e-13,33;CL:0000404,9.78e-13,33;CL:0002453,5.59e-10,8;CL:0000393,1.04e-09,39;CL:0000211,1.04e-09,39;CL:0002321,5.02e-08,70;CL:0000128,1.17e-07,6;CL:0000126,1.17e-07,6;CL:0000127,1.17e-07,6;CL:0000333,1.50e-07,10;CL:0000095,1.50e-07,10;CL:0000243,1.50e-07,10;CL:0000123,1.50e-07,10;CL:0000125,1.50e-07,10;CL:0000030,1.50e-07,10;CL:0000339,1.50e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.13e-40!73;UBERON:0005743!1.13e-40!73;UBERON:0000073!4.69e-40!75;UBERON:0001016!4.69e-40!75;UBERON:0001049!1.75e-39!52;UBERON:0005068!1.75e-39!52;UBERON:0006241!1.75e-39!52;UBERON:0007135!1.75e-39!52;UBERON:0000955!2.55e-36!50;UBERON:0006238!2.55e-36!50;UBERON:0002616!2.09e-35!49;UBERON:0000033!1.08e-30!63;UBERON:0002346!6.94e-29!71;UBERON:0003075!6.94e-29!71;UBERON:0007284!6.94e-29!71;UBERON:0004121!1.14e-27!102;UBERON:0000924!1.14e-27!102;UBERON:0006601!1.14e-27!102;UBERON:0003080!1.77e-27!40;UBERON:0002780!1.47e-26!39;UBERON:0001890!1.47e-26!39;UBERON:0006240!1.47e-26!39;UBERON:0003056!1.75e-25!49;UBERON:0002020!2.20e-25!34;UBERON:0002791!2.68e-20!29;UBERON:0003528!2.68e-20!29;UBERON:0001893!2.68e-20!29;UBERON:0007811!8.09e-18!86;UBERON:0000153!1.13e-16!94;UBERON:0000956!2.75e-14!21;UBERON:0001869!2.75e-14!21;UBERON:0000203!2.75e-14!21;UBERON:0002619!2.74e-12!17;UBERON:0003076!5.06e-12!12;UBERON:0003057!5.06e-12!12;UBERON:0000025!7.16e-08!114;UBERON:0002021!1.66e-07!10;UBERON:0000411!1.66e-07!10;UBERON:0001950!1.66e-07!10;UBERON:0002240!2.30e-07!6;UBERON:0005174!2.30e-07!6;UBERON:0001137!2.30e-07!6;UBERON:0002420!3.33e-07!8;UBERON:0007245!3.33e-07!8;UBERON:0010009!3.33e-07!8;UBERON:0010011!3.33e-07!8;UBERON:0000454!3.33e-07!8;UBERON:0001894!4.33e-07!10;UBERON:0006222!4.33e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!1.13e-40!73;UBERON:0005743!1.13e-40!73;UBERON:0000073!4.69e-40!75;UBERON:0001016!4.69e-40!75;UBERON:0001049!1.75e-39!52;UBERON:0005068!1.75e-39!52;UBERON:0006241!1.75e-39!52;UBERON:0007135!1.75e-39!52;UBERON:0000955!2.55e-36!50;UBERON:0006238!2.55e-36!50;UBERON:0002616!2.09e-35!49;UBERON:0000033!1.08e-30!63;UBERON:0002346!6.94e-29!71;UBERON:0003075!6.94e-29!71;UBERON:0007284!6.94e-29!71;UBERON:0004121!1.14e-27!102;UBERON:0000924!1.14e-27!102;UBERON:0006601!1.14e-27!102;UBERON:0003080!1.77e-27!40;UBERON:0002780!1.47e-26!39;UBERON:0001890!1.47e-26!39;UBERON:0006240!1.47e-26!39;UBERON:0003056!1.75e-25!49;UBERON:0002020!2.20e-25!34;UBERON:0002791!2.68e-20!29;UBERON:0003528!2.68e-20!29;UBERON:0001893!2.68e-20!29;UBERON:0007811!8.09e-18!86;UBERON:0000153!1.13e-16!94;UBERON:0000956!2.75e-14!21;UBERON:0001869!2.75e-14!21;UBERON:0000203!2.75e-14!21;UBERON:0002619!2.74e-12!17;UBERON:0003076!5.06e-12!12;UBERON:0003057!5.06e-12!12;UBERON:0000025!7.16e-08!114;UBERON:0002021!1.66e-07!10;UBERON:0000411!1.66e-07!10;UBERON:0001950!1.66e-07!10;UBERON:0002240!2.30e-07!6;UBERON:0005174!2.30e-07!6;UBERON:0001137!2.30e-07!6;UBERON:0002420!3.33e-07!8;UBERON:0007245!3.33e-07!8;UBERON:0010009!3.33e-07!8;UBERON:0010011!3.33e-07!8;UBERON:0000454!3.33e-07!8;UBERON:0001894!4.33e-07!10;UBERON:0006222!4.33e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.17e-49,73;UBERON:0000073,5.82e-48,54;UBERON:0001016,8.10e-48,75;UBERON:0001049,4.63e-46,52;UBERON:0005068,4.63e-46,52;UBERON:0006241,4.63e-46,52;UBERON:0007135,4.63e-46,52;UBERON:0000955,6.33e-39,47;UBERON:0006238,6.33e-39,47;UBERON:0002616,8.30e-38,46;UBERON:0002346,2.45e-34,64;UBERON:0003075,2.45e-34,64;UBERON:0007284,2.45e-34,64;UBERON:0004121,1.04e-33,95;UBERON:0000924,1.04e-33,95;UBERON:0006601,1.04e-33,95;UBERON:0003080,3.64e-31,40;UBERON:0002780,5.01e-30,39;UBERON:0001890,5.01e-30,39;UBERON:0006240,5.01e-30,39;UBERON:0002020,5.31e-30,34;UBERON:0010371,4.16e-28,73;UBERON:0003528,1.17e-23,29;UBERON:0002791,1.17e-23,29;UBERON:0001893,1.17e-23,29;UBERON:0003056,3.62e-23,49;UBERON:0010314,4.79e-19,92;UBERON:0000956,3.77e-16,21;UBERON:0001869,3.77e-16,21;UBERON:0000203,3.77e-16,21;UBERON:0002619,4.53e-15,17;UBERON:0003076,9.83e-15,12;UBERON:0003057,9.83e-15,12;UBERON:0000025,1.79e-12,114;UBERON:0004111,1.03e-10,122;UBERON:0002021,4.73e-09,10;UBERON:0000411,4.73e-09,10;UBERON:0001950,4.73e-09,10;UBERON:0002240,7.10e-09,6;UBERON:0005174,7.10e-09,6;UBERON:0001137,7.10e-09,6;UBERON:0002420,1.13e-08,8;UBERON:0007245,1.13e-08,8;UBERON:0010009,1.13e-08,8;UBERON:0010011,1.13e-08,8;UBERON:0000454,1.13e-08,8;UBERON:0001948,1.26e-07,5;UBERON:0002315,1.26e-07,5;UBERON:0001954,1.84e-07,7;UBERON:0003022,1.84e-07,7;UBERON:0002421,1.84e-07,7;UBERON:0000349,1.84e-07,7;UBERON:0002600,1.84e-07,7;UBERON:0004733,2.05e-07,6;UBERON:0004732,2.05e-07,6;UBERON:0002028,2.05e-07,6;UBERON:0007277,2.05e-07,6;UBERON:0011216,2.52e-07,194;UBERON:0001894,3.51e-07,10;UBERON:0006222,3.51e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,7.84890562969608,11.8630538676615,12.0546537426056,13.2987100544094,41.6882436658418,0,0,0,0,0,0,17.3992156339254,14.2827564403449,12.6766280701236,0.677689064138264,0,0,0,0,11.085204089181,32.6585559523321,2.17748185847803,1.75507719831198,0.841299845405528,17.7103610330358,18.1112203580323,2.57230678351403,3.54628242767475,3.67687514644008,5.50579404996943,9.83192503255945,7.0659005297872,11.4741070325269,8.5083508550241,10.4182674111352,6.14202597803038,5.6276261003168,6.26472815884921,19.1508580557884,24.6303007782448,14.1663578827228,0,0.377857800533928,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.296793474485,15.0801628905688,0,0,0,0,10.6351353977424,5.03250663100489,3.76963056338593,7.64827008846016,5.37002460393694,7.2725815595846,8.59878694259116,0,0,0,0.420883711772948,0.130120442962704,0.229902104433473,0,0.150704817835715,0,0,0.374806898238915,0.258703370739016,0,1.13463648100692,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46753866266731,7.10041825417063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54587772942622,13.5965556446956,0,0,0,0,0,0,0,0,0,0,0,8.03303291054518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04263763452273,1.8006109403131,0.905510786479282,1.50035924522115,3.19212420556092,4.10248280484762,5.92376474167636,6.39376393140658,0.469343416127421,0,0,0,0,0,0,0,0,24.4761398653873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405450430580328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,3.22227665555024,3.43737308063638,8.248952752497,3.42541259885321,3.7769694869485,3.37511250115903,1.80128481289688,8.60970577069989,4.65984280576638,18.1627858272309,7.58147259461959,5.12200817262403,1.45864030240976,1.25767897576789,2.02227859295016,1.33348036680969,0.618105171716683,0.64183841918363,1.51618327058278,0.50695859978048,0.565879024158229,1.591905626988,1.02440243847791,1.55075766180156,0.952587382566147,1.15884325944855,0.964546102318525,0.824171801606613,0.883193520806384,0,0.532427418478012,1.66905332963125,1.16277133305863,1.31753132581463,1.52306294205018,0.914639864363863,0.526139422875686,0.814824683075171,0.561142271657738,0.711810108745045,1.57607171800902,1.63692417267876,1.39443157067369,2.12197272079256,2.74791635731741,0.935726433781634,1.07435527024149,1.3390183244819,0.441182838239031,0.463735671240843 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,7.84890562969608,11.8630538676615,12.0546537426056,13.2987100544094,41.6882436658418,0,0,0,0,0,0,17.3992156339254,14.2827564403449,12.6766280701236,0.677689064138264,0,0,0,0,11.085204089181,32.6585559523321,2.17748185847803,1.75507719831198,0.841299845405528,17.7103610330358,18.1112203580323,2.57230678351403,3.54628242767475,3.67687514644008,5.50579404996943,9.83192503255945,7.0659005297872,11.4741070325269,8.5083508550241,10.4182674111352,6.14202597803038,5.6276261003168,6.26472815884921,19.1508580557884,24.6303007782448,14.1663578827228,0,0.377857800533928,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.296793474485,15.0801628905688,0,0,0,0,10.6351353977424,5.03250663100489,3.76963056338593,7.64827008846016,5.37002460393694,7.2725815595846,8.59878694259116,0,0,0,0.420883711772948,0.130120442962704,0.229902104433473,0,0.150704817835715,0,0,0.374806898238915,0.258703370739016,0,1.13463648100692,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.46753866266731,7.10041825417063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.54587772942622,13.5965556446956,0,0,0,0,0,0,0,0,0,0,0,8.03303291054518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04263763452273,1.8006109403131,0.905510786479282,1.50035924522115,3.19212420556092,4.10248280484762,5.92376474167636,6.39376393140658,0.469343416127421,0,0,0,0,0,0,0,0,24.4761398653873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405450430580328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,3.22227665555024,3.43737308063638,8.248952752497,3.42541259885321,3.7769694869485,3.37511250115903,1.80128481289688,8.60970577069989,4.65984280576638,18.1627858272309,7.58147259461959,5.12200817262403,1.45864030240976,1.25767897576789,2.02227859295016,1.33348036680969,0.618105171716683,0.64183841918363,1.51618327058278,0.50695859978048,0.565879024158229,1.591905626988,1.02440243847791,1.55075766180156,0.952587382566147,1.15884325944855,0.964546102318525,0.824171801606613,0.883193520806384,0,0.532427418478012,1.66905332963125,1.16277133305863,1.31753132581463,1.52306294205018,0.914639864363863,0.526139422875686,0.814824683075171,0.561142271657738,0.711810108745045,1.57607171800902,1.63692417267876,1.39443157067369,2.12197272079256,2.74791635731741,0.935726433781634,1.07435527024149,1.3390183244819,0.441182838239031,0.463735671240843 | ||
|short_description=p1@Rfx4 | |short_description=p1@Rfx4 | ||
}} | }} |
Latest revision as of 12:12, 26 September 2015
Short description: | p1@Rfx4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rfx4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2593 |
Association with transcript: | 88bp_to_ENSMUST00000060397_5end |
EntrezGene: | Rfx4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.63e-21 | 23 |
neuroblast (sensu Vertebrata) | 1.63e-21 | 23 |
neural cell | 4.78e-19 | 43 |
ectodermal cell | 2.22e-18 | 44 |
neurectodermal cell | 2.22e-18 | 44 |
neuron | 9.78e-13 | 33 |
neuronal stem cell | 9.78e-13 | 33 |
neuroblast | 9.78e-13 | 33 |
electrically signaling cell | 9.78e-13 | 33 |
oligodendrocyte precursor cell | 5.59e-10 | 8 |
electrically responsive cell | 1.04e-09 | 39 |
electrically active cell | 1.04e-09 | 39 |
embryonic cell | 5.02e-08 | 70 |
oligodendrocyte | 1.17e-07 | 6 |
macroglial cell | 1.17e-07 | 6 |
astrocyte | 1.17e-07 | 6 |
migratory neural crest cell | 1.50e-07 | 10 |
neuron associated cell | 1.50e-07 | 10 |
glial cell (sensu Vertebrata) | 1.50e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.50e-07 | 10 |
glial cell | 1.50e-07 | 10 |
glioblast | 1.50e-07 | 10 |
glioblast (sensu Vertebrata) | 1.50e-07 | 10 |