FFCP PHASE1:Mm9::chr6:63206046..63206063,+: Difference between revisions
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{{FFCP|EntrezGene=14804|HGNC=|MCL_coexpression_id=30|UniProt=Q61625|association_with_transcript=25bp_to_ENSMUST00000095852_5end|description=CAGE_peak_6_at_Grid2_5end|id=chr6:63206046..63206063,+|ontology_enrichment_celltype=CL:0000540!3.12e-14!33;CL:0000047!3.12e-14!33;CL:0000031!3.12e-14!33;CL:0000404!3.12e-14!33;CL:0000117!4.83e-14!23;CL:0000337!4.83e-14!23;CL:0002319!4.18e-11!43;CL:0000221!1.28e-10!44;CL:0000133!1.28e-10!44;CL:0000393!1.56e-10!39;CL:0000211!1.56e-10!39;CL:0000055!3.63e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.28e-26,23;CL:0000337,1.28e-26,23;CL:0000540,1.04e-17,33;CL:0000047,1.04e-17,33;CL:0000031,1.04e-17,33;CL:0000404,1.04e-17,33;CL:0000393,1.49e-14,39;CL:0000211,1.49e-14,39;CL:0002319,6.12e-13,43;CL:0000221,1.39e-12,44;CL:0000133,1.39e-12,44;CL:0000120,1.70e-11,3;CL:0002612,4.36e-11,3;CL:0002611,1.15e-07,2;CL:0002321,6.95e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.20e-24!73;UBERON:0005743!2.20e-24!73;UBERON:0000073!3.47e-23!75;UBERON:0001016!3.47e-23!75;UBERON:0002346!7.37e-21!71;UBERON:0003075!7.37e-21!71;UBERON:0007284!7.37e-21!71;UBERON:0004121!3.09e-20!102;UBERON:0000924!3.09e-20!102;UBERON:0006601!3.09e-20!102;UBERON:0001049!6.31e-20!52;UBERON:0005068!6.31e-20!52;UBERON:0006241!6.31e-20!52;UBERON:0007135!6.31e-20!52;UBERON:0000033!3.06e-19!63;UBERON:0002020!2.43e-17!34;UBERON:0002616!3.30e-17!49;UBERON:0000955!1.39e-16!50;UBERON:0006238!1.39e-16!50;UBERON:0003056!1.53e-16!49;UBERON:0002791!5.91e-13!29;UBERON:0003528!5.91e-13!29;UBERON:0001893!5.91e-13!29;UBERON:0003080!6.03e-13!40;UBERON:0002780!2.77e-12!39;UBERON:0001890!2.77e-12!39;UBERON:0006240!2.77e-12!39;UBERON:0007811!1.81e-11!86;UBERON:0000153!4.62e-11!94;UBERON:0002619!1.07e-08!17;UBERON:0000956!3.41e-08!21;UBERON:0001869!3.41e-08!21;UBERON:0000203!3.41e-08!21;UBERON:0003076!4.24e-08!12;UBERON:0003057!4.24e-08!12;UBERON:0002240!5.37e-07!6;UBERON:0005174!5.37e-07!6;UBERON:0001137!5.37e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.51e-29,73;UBERON:0000073,1.62e-28,54;UBERON:0001016,1.99e-28,75;UBERON:0001049,6.02e-27,52;UBERON:0005068,6.02e-27,52;UBERON:0006241,6.02e-27,52;UBERON:0007135,6.02e-27,52;UBERON:0003076,6.62e-22,12;UBERON:0003057,6.62e-22,12;UBERON:0002020,9.11e-22,34;UBERON:0004121,1.63e-21,95;UBERON:0000924,1.63e-21,95;UBERON:0006601,1.63e-21,95;UBERON:0002346,3.99e-21,64;UBERON:0003075,3.99e-21,64;UBERON:0007284,3.99e-21,64;UBERON:0002240,4.24e-20,6;UBERON:0005174,4.24e-20,6;UBERON:0001137,4.24e-20,6;UBERON:0010371,5.21e-18,73;UBERON:0001948,4.13e-17,5;UBERON:0002315,4.13e-17,5;UBERON:0002616,3.54e-15,46;UBERON:0000955,8.69e-15,47;UBERON:0006238,8.69e-15,47;UBERON:0002420,1.21e-14,8;UBERON:0007245,1.21e-14,8;UBERON:0010009,1.21e-14,8;UBERON:0010011,1.21e-14,8;UBERON:0000454,1.21e-14,8;UBERON:0010314,2.00e-13,92;UBERON:0003528,1.39e-11,29;UBERON:0002791,1.39e-11,29;UBERON:0001893,1.39e-11,29;UBERON:0002780,1.43e-11,39;UBERON:0001890,1.43e-11,39;UBERON:0006240,1.43e-11,39;UBERON:0003080,3.20e-11,40;UBERON:0002257,4.36e-11,3;UBERON:0000369,1.13e-10,5;UBERON:0002435,1.13e-10,5;UBERON:0000204,1.13e-10,5;UBERON:0010082,1.13e-10,5;UBERON:0000025,5.10e-10,114;UBERON:0004111,4.41e-09,122;UBERON:0003056,1.03e-08,49;UBERON:0011216,3.57e-08,194;UBERON:0002256,1.15e-07,2|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,2.42779753031517,3.70293685490423,3.1691570175309,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0,0,3.14216082844184,1.32521124570968,0.244981598429908,0.287536413054709,0.919218786610021,2.20231761998777,1.53224805702225,0.921639199537461,0.791317726381163,1.09785172322892,1.56274011167028,3.35019598801657,0,1.98637722109853,3.24091444021034,2.13557521198654,1.67759501242771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,14.6390398505774,14.8707161837553,0,0,0,0,0.898743836428936,1.37250180845588,2.63874139437015,0.695297280769106,0.767146371990992,1.24672826735736,1.62241263067758,0,0,0,0.210441855886474,0.260240885925407,0.689706313300419,0.180062129805349,0.30140963567143,0.272145996605311,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,1.05490517932983,0,0,0.315508219416257,0,0,0,0.891194696329576,0.849229592366497,0,0.292255857911312,0.395287777946524,0,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0.532020700926821,0.178368817602071,0,0,0,0,0.220528398054962,0,0,0,0,0,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0.120195449519969,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.14579102687879,1.03111909406213,2.05524755931193,0,1.35004500046361,0.45032120322422,0.906284817968409,0,0,0,0.512200817262403,0.972426868273176,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0.505394423527595,0.50695859978048,0.188626341386076,0.561849044819294,0.192075457214608,0.229741875822453,0,0.463537303779422,0.38581844092741,0.412085900803307,0.294397840268795,0.342869252385415,0.354951612318675,0,0.436039249896986,0.470546902076653,0.423073039458382,0.365855945745545,0.526139422875686,0.271608227691724,0.561142271657738,0.118635018124174,0.29551344712669,0,0,0.964533054905707,0.499621155875892,0,0.429742108096597,0.191288332068843,0,0|short_description=p6@Grid2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14804 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=Q61625 | |||
|association_with_transcript=25bp_to_ENSMUST00000095852_5end | |||
|cluster_id=chr6:63206046..63206063,+ | |||
|description=CAGE_peak_6_at_Grid2_5end | |||
|id=chr6:63206046..63206063,+ | |||
|ontology_enrichment_celltype=CL:0000540!3.12e-14!33;CL:0000047!3.12e-14!33;CL:0000031!3.12e-14!33;CL:0000404!3.12e-14!33;CL:0000117!4.83e-14!23;CL:0000337!4.83e-14!23;CL:0002319!4.18e-11!43;CL:0000221!1.28e-10!44;CL:0000133!1.28e-10!44;CL:0000393!1.56e-10!39;CL:0000211!1.56e-10!39;CL:0000055!3.63e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.28e-26,23;CL:0000337,1.28e-26,23;CL:0000540,1.04e-17,33;CL:0000047,1.04e-17,33;CL:0000031,1.04e-17,33;CL:0000404,1.04e-17,33;CL:0000393,1.49e-14,39;CL:0000211,1.49e-14,39;CL:0002319,6.12e-13,43;CL:0000221,1.39e-12,44;CL:0000133,1.39e-12,44;CL:0000120,1.70e-11,3;CL:0002612,4.36e-11,3;CL:0002611,1.15e-07,2;CL:0002321,6.95e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.20e-24!73;UBERON:0005743!2.20e-24!73;UBERON:0000073!3.47e-23!75;UBERON:0001016!3.47e-23!75;UBERON:0002346!7.37e-21!71;UBERON:0003075!7.37e-21!71;UBERON:0007284!7.37e-21!71;UBERON:0004121!3.09e-20!102;UBERON:0000924!3.09e-20!102;UBERON:0006601!3.09e-20!102;UBERON:0001049!6.31e-20!52;UBERON:0005068!6.31e-20!52;UBERON:0006241!6.31e-20!52;UBERON:0007135!6.31e-20!52;UBERON:0000033!3.06e-19!63;UBERON:0002020!2.43e-17!34;UBERON:0002616!3.30e-17!49;UBERON:0000955!1.39e-16!50;UBERON:0006238!1.39e-16!50;UBERON:0003056!1.53e-16!49;UBERON:0002791!5.91e-13!29;UBERON:0003528!5.91e-13!29;UBERON:0001893!5.91e-13!29;UBERON:0003080!6.03e-13!40;UBERON:0002780!2.77e-12!39;UBERON:0001890!2.77e-12!39;UBERON:0006240!2.77e-12!39;UBERON:0007811!1.81e-11!86;UBERON:0000153!4.62e-11!94;UBERON:0002619!1.07e-08!17;UBERON:0000956!3.41e-08!21;UBERON:0001869!3.41e-08!21;UBERON:0000203!3.41e-08!21;UBERON:0003076!4.24e-08!12;UBERON:0003057!4.24e-08!12;UBERON:0002240!5.37e-07!6;UBERON:0005174!5.37e-07!6;UBERON:0001137!5.37e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.51e-29,73;UBERON:0000073,1.62e-28,54;UBERON:0001016,1.99e-28,75;UBERON:0001049,6.02e-27,52;UBERON:0005068,6.02e-27,52;UBERON:0006241,6.02e-27,52;UBERON:0007135,6.02e-27,52;UBERON:0003076,6.62e-22,12;UBERON:0003057,6.62e-22,12;UBERON:0002020,9.11e-22,34;UBERON:0004121,1.63e-21,95;UBERON:0000924,1.63e-21,95;UBERON:0006601,1.63e-21,95;UBERON:0002346,3.99e-21,64;UBERON:0003075,3.99e-21,64;UBERON:0007284,3.99e-21,64;UBERON:0002240,4.24e-20,6;UBERON:0005174,4.24e-20,6;UBERON:0001137,4.24e-20,6;UBERON:0010371,5.21e-18,73;UBERON:0001948,4.13e-17,5;UBERON:0002315,4.13e-17,5;UBERON:0002616,3.54e-15,46;UBERON:0000955,8.69e-15,47;UBERON:0006238,8.69e-15,47;UBERON:0002420,1.21e-14,8;UBERON:0007245,1.21e-14,8;UBERON:0010009,1.21e-14,8;UBERON:0010011,1.21e-14,8;UBERON:0000454,1.21e-14,8;UBERON:0010314,2.00e-13,92;UBERON:0003528,1.39e-11,29;UBERON:0002791,1.39e-11,29;UBERON:0001893,1.39e-11,29;UBERON:0002780,1.43e-11,39;UBERON:0001890,1.43e-11,39;UBERON:0006240,1.43e-11,39;UBERON:0003080,3.20e-11,40;UBERON:0002257,4.36e-11,3;UBERON:0000369,1.13e-10,5;UBERON:0002435,1.13e-10,5;UBERON:0000204,1.13e-10,5;UBERON:0010082,1.13e-10,5;UBERON:0000025,5.10e-10,114;UBERON:0004111,4.41e-09,122;UBERON:0003056,1.03e-08,49;UBERON:0011216,3.57e-08,194;UBERON:0002256,1.15e-07,2 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,2.42779753031517,3.70293685490423,3.1691570175309,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0,0,3.14216082844184,1.32521124570968,0.244981598429908,0.287536413054709,0.919218786610021,2.20231761998777,1.53224805702225,0.921639199537461,0.791317726381163,1.09785172322892,1.56274011167028,3.35019598801657,0,1.98637722109853,3.24091444021034,2.13557521198654,1.67759501242771,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,14.6390398505774,14.8707161837553,0,0,0,0,0.898743836428936,1.37250180845588,2.63874139437015,0.695297280769106,0.767146371990992,1.24672826735736,1.62241263067758,0,0,0,0.210441855886474,0.260240885925407,0.689706313300419,0.180062129805349,0.30140963567143,0.272145996605311,0.2562274405697,0.0937017245597288,0.258703370739016,0,0,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0,0,0,0,0.414251545071004,0,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,1.05144974282064,0.308713837137853,0,0,0,0,0.128867461322093,0,0.22237804384487,0,0,0,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,1.05490517932983,0,0,0.315508219416257,0,0,0,0.891194696329576,0.849229592366497,0,0.292255857911312,0.395287777946524,0,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0.532020700926821,0.178368817602071,0,0,0,0,0.220528398054962,0,0,0,0,0,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0.120195449519969,0,0.100966449948148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0.920650473014354,1.14579102687879,1.03111909406213,2.05524755931193,0,1.35004500046361,0.45032120322422,0.906284817968409,0,0,0,0.512200817262403,0.972426868273176,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0.505394423527595,0.50695859978048,0.188626341386076,0.561849044819294,0.192075457214608,0.229741875822453,0,0.463537303779422,0.38581844092741,0.412085900803307,0.294397840268795,0.342869252385415,0.354951612318675,0,0.436039249896986,0.470546902076653,0.423073039458382,0.365855945745545,0.526139422875686,0.271608227691724,0.561142271657738,0.118635018124174,0.29551344712669,0,0,0.964533054905707,0.499621155875892,0,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p6@Grid2 | |||
}} |
Latest revision as of 15:14, 1 October 2015
Short description: | p6@Grid2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Grid2_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 25bp_to_ENSMUST00000095852_5end |
EntrezGene: | Grid2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.28e-26 | 23 |
neuroblast (sensu Vertebrata) | 1.28e-26 | 23 |
neuron | 1.04e-17 | 33 |
neuronal stem cell | 1.04e-17 | 33 |
neuroblast | 1.04e-17 | 33 |
electrically signaling cell | 1.04e-17 | 33 |
electrically responsive cell | 1.49e-14 | 39 |
electrically active cell | 1.49e-14 | 39 |
neural cell | 6.12e-13 | 43 |
ectodermal cell | 1.39e-12 | 44 |
neurectodermal cell | 1.39e-12 | 44 |
granule cell | 1.70e-11 | 3 |
neuron of the ventral spinal cord | 4.36e-11 | 3 |
neuron of the dorsal spinal cord | 1.15e-07 | 2 |
embryonic cell | 6.95e-07 | 70 |