FF:10042-101F6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004735 | ||
|accession_numbers=CAGE;DRX008640;DRR009512;DRZ000937;DRZ002322;DRZ012287;DRZ013672 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002336,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005162,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000122,UBERON:0011215,UBERON:0001018,UBERON:0002616,UBERON:0002780,UBERON:0002473,UBERON:0005340,UBERON:0003544,UBERON:0005970,UBERON:0002316,UBERON:0010317,UBERON:0001020,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0002437 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010042 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/corpus%2520callosum%252c%2520adult%252c%2520pool1.CNhs10649.10042-101F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10042-101F6 | |id=FF:10042-101F6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010042 | ||
|is_obsolete= | |||
|library_id=CNhs10649 | |||
|library_id_phase_based=2:CNhs10649 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10042 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10042 | |||
|name=corpus callosum, adult, pool1 | |name=corpus callosum, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10649,LSID658,release008,COMPLETED | |profile_hcage=CNhs10649,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636567 | |rna_catalog_number=Cat:636567 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.35912538547731e-272!GO:0005737;cytoplasm;2.01533014275189e-151!GO:0043226;organelle;8.50845710046615e-105!GO:0043229;intracellular organelle;1.76959455086347e-104!GO:0043227;membrane-bound organelle;2.83958464752573e-100!GO:0043231;intracellular membrane-bound organelle;3.41562815392676e-100!GO:0044444;cytoplasmic part;1.32437603307025e-97!GO:0005515;protein binding;2.38239108442612e-65!GO:0044422;organelle part;3.05342034516577e-65!GO:0044446;intracellular organelle part;3.08523762663188e-64!GO:0032991;macromolecular complex;5.34544207671818e-50!GO:0016043;cellular component organization and biogenesis;1.52399478389142e-42!GO:0031090;organelle membrane;1.80606424802181e-38!GO:0033036;macromolecule localization;2.27456822449619e-38!GO:0015031;protein transport;1.43165725327941e-37!GO:0003723;RNA binding;6.38222857450689e-37!GO:0005739;mitochondrion;1.06746855318031e-36!GO:0044238;primary metabolic process;3.36073582617365e-35!GO:0008104;protein localization;3.86005416595437e-35!GO:0045184;establishment of protein localization;2.4110709462355e-34!GO:0030529;ribonucleoprotein complex;4.04238081761158e-34!GO:0044237;cellular metabolic process;6.00526390054532e-34!GO:0043233;organelle lumen;1.83057611272817e-33!GO:0031974;membrane-enclosed lumen;1.83057611272817e-33!GO:0044428;nuclear part;1.70841999509577e-31!GO:0046907;intracellular transport;3.65688667024633e-31!GO:0043170;macromolecule metabolic process;2.83889233565057e-28!GO:0043234;protein complex;1.08634155128975e-27!GO:0031975;envelope;3.22681201853332e-26!GO:0044429;mitochondrial part;3.3183989625036e-26!GO:0031967;organelle envelope;5.68469748715863e-26!GO:0016071;mRNA metabolic process;7.83347652351687e-26!GO:0005634;nucleus;1.4587451633971e-25!GO:0019538;protein metabolic process;1.96175956140145e-25!GO:0051649;establishment of cellular localization;5.03617526743824e-24!GO:0051641;cellular localization;5.81747409224075e-24!GO:0006396;RNA processing;5.56717633535255e-23!GO:0006886;intracellular protein transport;1.22258970297165e-22!GO:0008380;RNA splicing;1.22258970297165e-22!GO:0016192;vesicle-mediated transport;1.79121063911622e-22!GO:0044260;cellular macromolecule metabolic process;3.97469055323861e-22!GO:0044267;cellular protein metabolic process;2.27364738364943e-21!GO:0005829;cytosol;7.10865423162553e-21!GO:0006397;mRNA processing;9.33985482150066e-21!GO:0006996;organelle organization and biogenesis;1.44410330238566e-19!GO:0009058;biosynthetic process;1.66511931285174e-19!GO:0031981;nuclear lumen;2.52145154180315e-19!GO:0005740;mitochondrial envelope;9.15942381806676e-19!GO:0031966;mitochondrial membrane;4.05261935139045e-18!GO:0005794;Golgi apparatus;9.60688481502815e-18!GO:0065003;macromolecular complex assembly;1.85163349423225e-17!GO:0019866;organelle inner membrane;3.22770684630525e-17!GO:0005840;ribosome;1.44305214732358e-16!GO:0043283;biopolymer metabolic process;2.3013363681407e-16!GO:0005743;mitochondrial inner membrane;2.67389532347596e-16!GO:0006119;oxidative phosphorylation;6.77044719820976e-16!GO:0012505;endomembrane system;8.94217947292485e-16!GO:0022607;cellular component assembly;1.26999996944727e-15!GO:0006412;translation;2.12010847741826e-15!GO:0005681;spliceosome;2.3485316647505e-15!GO:0048770;pigment granule;4.82236107170953e-15!GO:0042470;melanosome;4.82236107170953e-15!GO:0005783;endoplasmic reticulum;1.11961943413678e-14!GO:0016874;ligase activity;1.79969938155511e-14!GO:0000166;nucleotide binding;1.82436382448262e-14!GO:0009059;macromolecule biosynthetic process;3.28488631836877e-14!GO:0031982;vesicle;6.80303606065681e-14!GO:0044249;cellular biosynthetic process;7.01521494110828e-14!GO:0006512;ubiquitin cycle;1.08001537397077e-13!GO:0031410;cytoplasmic vesicle;2.57060833650297e-13!GO:0031988;membrane-bound vesicle;2.73677929898275e-13!GO:0005654;nucleoplasm;4.20826852333083e-13!GO:0016023;cytoplasmic membrane-bound vesicle;9.52704701383775e-13!GO:0003735;structural constituent of ribosome;9.85979335829451e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.03465791380397e-12!GO:0010467;gene expression;1.08757654718594e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.10651875181242e-12!GO:0016462;pyrophosphatase activity;1.2888087310422e-12!GO:0043412;biopolymer modification;2.01223708500359e-12!GO:0008134;transcription factor binding;3.93754216290633e-12!GO:0006464;protein modification process;5.50766401678683e-12!GO:0017111;nucleoside-triphosphatase activity;5.74493706783209e-12!GO:0044451;nucleoplasm part;1.59361315628946e-11!GO:0044265;cellular macromolecule catabolic process;3.28406986676779e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;4.14015094646648e-11!GO:0006511;ubiquitin-dependent protein catabolic process;5.01929016300232e-11!GO:0044455;mitochondrial membrane part;5.29204090256576e-11!GO:0044257;cellular protein catabolic process;6.0186014937398e-11!GO:0019941;modification-dependent protein catabolic process;6.57111293600918e-11!GO:0043632;modification-dependent macromolecule catabolic process;6.57111293600918e-11!GO:0048193;Golgi vesicle transport;7.78982595673846e-11!GO:0005768;endosome;7.85941438024183e-11!GO:0043687;post-translational protein modification;8.08779093192161e-11!GO:0008092;cytoskeletal protein binding;9.07187696380816e-11!GO:0030695;GTPase regulator activity;9.72364263735872e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.80114973606912e-11!GO:0033279;ribosomal subunit;1.13315209233572e-10!GO:0006457;protein folding;1.53655323585878e-10!GO:0005746;mitochondrial respiratory chain;1.5490389518151e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.74177990977044e-10!GO:0006605;protein targeting;1.93370988779651e-10!GO:0050136;NADH dehydrogenase (quinone) activity;2.38694276400326e-10!GO:0003954;NADH dehydrogenase activity;2.38694276400326e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.38694276400326e-10!GO:0031980;mitochondrial lumen;4.81570284139336e-10!GO:0005759;mitochondrial matrix;4.81570284139336e-10!GO:0032553;ribonucleotide binding;5.22746930149454e-10!GO:0032555;purine ribonucleotide binding;5.22746930149454e-10!GO:0044248;cellular catabolic process;6.01220936062968e-10!GO:0017076;purine nucleotide binding;1.05165356784515e-09!GO:0016044;membrane organization and biogenesis;1.39051123636034e-09!GO:0008565;protein transporter activity;1.51287225764078e-09!GO:0022618;protein-RNA complex assembly;1.56058268998303e-09!GO:0044432;endoplasmic reticulum part;1.78942257080509e-09!GO:0043285;biopolymer catabolic process;2.10819404008671e-09!GO:0006461;protein complex assembly;3.79668249174451e-09!GO:0051082;unfolded protein binding;4.46222188887796e-09!GO:0044445;cytosolic part;4.87020789828654e-09!GO:0030964;NADH dehydrogenase complex (quinone);6.43798872267978e-09!GO:0045271;respiratory chain complex I;6.43798872267978e-09!GO:0005747;mitochondrial respiratory chain complex I;6.43798872267978e-09!GO:0042775;organelle ATP synthesis coupled electron transport;7.88826192977335e-09!GO:0042773;ATP synthesis coupled electron transport;7.88826192977335e-09!GO:0007010;cytoskeleton organization and biogenesis;8.67289659413624e-09!GO:0043228;non-membrane-bound organelle;1.01269485839357e-08!GO:0043232;intracellular non-membrane-bound organelle;1.01269485839357e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.11760592285509e-08!GO:0007264;small GTPase mediated signal transduction;1.11760592285509e-08!GO:0030163;protein catabolic process;1.17179016180629e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.29983070911954e-08!GO:0008135;translation factor activity, nucleic acid binding;1.42342991693717e-08!GO:0005083;small GTPase regulator activity;1.69246287717247e-08!GO:0031252;leading edge;2.34976064775951e-08!GO:0009057;macromolecule catabolic process;2.51952666381977e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.00644664780204e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19627337933988e-08!GO:0051186;cofactor metabolic process;4.0734428354033e-08!GO:0016604;nuclear body;5.51931696515248e-08!GO:0016607;nuclear speck;5.7506242500981e-08!GO:0005635;nuclear envelope;5.84827646933757e-08!GO:0030036;actin cytoskeleton organization and biogenesis;6.06545682263186e-08!GO:0000502;proteasome complex (sensu Eukaryota);6.06545682263186e-08!GO:0019899;enzyme binding;8.5600174946054e-08!GO:0005773;vacuole;8.89022677880934e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.95370227001718e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.7791958391057e-08!GO:0019829;cation-transporting ATPase activity;1.05568791124724e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.18816456958939e-07!GO:0000375;RNA splicing, via transesterification reactions;1.18816456958939e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.18816456958939e-07!GO:0006913;nucleocytoplasmic transport;1.24896486053247e-07!GO:0005789;endoplasmic reticulum membrane;1.27779206177844e-07!GO:0031965;nuclear membrane;1.50246470554529e-07!GO:0006793;phosphorus metabolic process;1.51140309893415e-07!GO:0006796;phosphate metabolic process;1.51140309893415e-07!GO:0044431;Golgi apparatus part;1.85188334203523e-07!GO:0008639;small protein conjugating enzyme activity;1.96939495411523e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.98419599150107e-07!GO:0019787;small conjugating protein ligase activity;1.99983829645438e-07!GO:0051169;nuclear transport;2.24002216857494e-07!GO:0016881;acid-amino acid ligase activity;2.59952839633608e-07!GO:0004842;ubiquitin-protein ligase activity;2.84872162866909e-07!GO:0048523;negative regulation of cellular process;3.82530030874487e-07!GO:0030029;actin filament-based process;4.67609463762507e-07!GO:0003924;GTPase activity;4.71063377242897e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.77206566802879e-07!GO:0006446;regulation of translational initiation;4.97432528421019e-07!GO:0000323;lytic vacuole;6.04643646632922e-07!GO:0005764;lysosome;6.04643646632922e-07!GO:0006897;endocytosis;6.53090769542886e-07!GO:0010324;membrane invagination;6.53090769542886e-07!GO:0015935;small ribosomal subunit;7.85661248112474e-07!GO:0003712;transcription cofactor activity;8.04259718300249e-07!GO:0044440;endosomal part;8.34224595992785e-07!GO:0010008;endosome membrane;8.34224595992785e-07!GO:0005770;late endosome;8.85293686169924e-07!GO:0015631;tubulin binding;1.0984666956063e-06!GO:0005769;early endosome;1.39234341853779e-06!GO:0003743;translation initiation factor activity;1.65184322956398e-06!GO:0015986;ATP synthesis coupled proton transport;1.80917413859319e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.80917413859319e-06!GO:0005525;GTP binding;2.0301953990051e-06!GO:0005905;coated pit;2.09431281490605e-06!GO:0015630;microtubule cytoskeleton;2.10881910133116e-06!GO:0045045;secretory pathway;2.12181320497422e-06!GO:0009056;catabolic process;2.65363054797008e-06!GO:0032559;adenyl ribonucleotide binding;2.77718451146317e-06!GO:0006413;translational initiation;2.79246039565242e-06!GO:0048475;coated membrane;3.53728650214437e-06!GO:0030117;membrane coat;3.53728650214437e-06!GO:0005730;nucleolus;3.66035367549571e-06!GO:0008047;enzyme activator activity;4.87808870387677e-06!GO:0003779;actin binding;4.8806365075709e-06!GO:0009060;aerobic respiration;4.88725963378591e-06!GO:0005524;ATP binding;5.05677389642068e-06!GO:0030554;adenyl nucleotide binding;5.70153739664105e-06!GO:0045333;cellular respiration;7.14954161670013e-06!GO:0016070;RNA metabolic process;8.04508813005676e-06!GO:0005096;GTPase activator activity;9.44094025712984e-06!GO:0017038;protein import;9.69295113473242e-06!GO:0006810;transport;1.03575807248697e-05!GO:0046034;ATP metabolic process;1.03614117962484e-05!GO:0006732;coenzyme metabolic process;1.04591738672474e-05!GO:0048519;negative regulation of biological process;1.118978741072e-05!GO:0048471;perinuclear region of cytoplasm;1.14169663991547e-05!GO:0006163;purine nucleotide metabolic process;1.21716391228516e-05!GO:0009150;purine ribonucleotide metabolic process;1.25349718280745e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.35073216911769e-05!GO:0016887;ATPase activity;1.363311379624e-05!GO:0008610;lipid biosynthetic process;1.43170367599345e-05!GO:0042623;ATPase activity, coupled;1.63732806183986e-05!GO:0000139;Golgi membrane;1.79569437274332e-05!GO:0006099;tricarboxylic acid cycle;1.90156502606193e-05!GO:0046356;acetyl-CoA catabolic process;1.90156502606193e-05!GO:0051246;regulation of protein metabolic process;1.95036603177983e-05!GO:0009259;ribonucleotide metabolic process;2.08332212964553e-05!GO:0016568;chromatin modification;2.09858357693957e-05!GO:0008654;phospholipid biosynthetic process;2.14094758510066e-05!GO:0044453;nuclear membrane part;2.1569212768848e-05!GO:0016564;transcription repressor activity;2.43148410467148e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.84641314087764e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.84641314087764e-05!GO:0006366;transcription from RNA polymerase II promoter;3.00867208303113e-05!GO:0032561;guanyl ribonucleotide binding;3.1163107072314e-05!GO:0019001;guanyl nucleotide binding;3.1163107072314e-05!GO:0006164;purine nucleotide biosynthetic process;3.57568725031112e-05!GO:0005874;microtubule;3.57738409132858e-05!GO:0009152;purine ribonucleotide biosynthetic process;3.61340300115147e-05!GO:0016310;phosphorylation;4.42873189410346e-05!GO:0007265;Ras protein signal transduction;4.68999780303607e-05!GO:0045786;negative regulation of progression through cell cycle;4.99547828311823e-05!GO:0006915;apoptosis;5.17715206605964e-05!GO:0012501;programmed cell death;5.23668935203503e-05!GO:0008287;protein serine/threonine phosphatase complex;5.39437483037209e-05!GO:0006403;RNA localization;5.79505735518729e-05!GO:0006754;ATP biosynthetic process;5.90579187610765e-05!GO:0006753;nucleoside phosphate metabolic process;5.90579187610765e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.30666580849772e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.30666580849772e-05!GO:0008017;microtubule binding;6.51384595307538e-05!GO:0050657;nucleic acid transport;6.51384595307538e-05!GO:0051236;establishment of RNA localization;6.51384595307538e-05!GO:0050658;RNA transport;6.51384595307538e-05!GO:0009109;coenzyme catabolic process;6.59064553059064e-05!GO:0051179;localization;6.5916028746474e-05!GO:0008219;cell death;6.70100558667181e-05!GO:0016265;death;6.70100558667181e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.08678421135938e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.10154093614149e-05!GO:0009199;ribonucleoside triphosphate metabolic process;7.54976244959007e-05!GO:0006084;acetyl-CoA metabolic process;7.96038868304043e-05!GO:0030027;lamellipodium;8.75267318178922e-05!GO:0030120;vesicle coat;8.97907085960328e-05!GO:0030662;coated vesicle membrane;8.97907085960328e-05!GO:0009055;electron carrier activity;9.26818526419859e-05!GO:0045259;proton-transporting ATP synthase complex;9.37449856085579e-05!GO:0009260;ribonucleotide biosynthetic process;9.63026814890081e-05!GO:0005643;nuclear pore;0.000108885240007423!GO:0009141;nucleoside triphosphate metabolic process;0.00011436791043335!GO:0050794;regulation of cellular process;0.000118799460575403!GO:0016791;phosphoric monoester hydrolase activity;0.000119052624700709!GO:0006613;cotranslational protein targeting to membrane;0.000119213235733135!GO:0015934;large ribosomal subunit;0.000122808158701757!GO:0007242;intracellular signaling cascade;0.000125160471990414!GO:0046467;membrane lipid biosynthetic process;0.000125279256742376!GO:0051187;cofactor catabolic process;0.000133927360304882!GO:0050789;regulation of biological process;0.000142152405295232!GO:0005798;Golgi-associated vesicle;0.000148557105252612!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000148557105252612!GO:0005793;ER-Golgi intermediate compartment;0.000162223430222834!GO:0005761;mitochondrial ribosome;0.000189692887013637!GO:0000313;organellar ribosome;0.000189692887013637!GO:0032940;secretion by cell;0.000191799906905294!GO:0051056;regulation of small GTPase mediated signal transduction;0.000213676312249297!GO:0015078;hydrogen ion transmembrane transporter activity;0.000224162720017385!GO:0006323;DNA packaging;0.000240027596129183!GO:0006259;DNA metabolic process;0.000241091457976227!GO:0009966;regulation of signal transduction;0.000248428593310652!GO:0001726;ruffle;0.000266329647042481!GO:0031901;early endosome membrane;0.000288129217829491!GO:0003714;transcription corepressor activity;0.000302401797153519!GO:0051170;nuclear import;0.000304447324419817!GO:0006643;membrane lipid metabolic process;0.000305498035348868!GO:0051128;regulation of cellular component organization and biogenesis;0.000308645802613358!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000314800647490583!GO:0051234;establishment of localization;0.000335359332804037!GO:0016126;sterol biosynthetic process;0.000341642445506285!GO:0006606;protein import into nucleus;0.000345270524940354!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000349669082591579!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000366210037761846!GO:0015399;primary active transmembrane transporter activity;0.000366210037761846!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000370819928748376!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000370819928748376!GO:0000151;ubiquitin ligase complex;0.00037484280359442!GO:0016197;endosome transport;0.000375496320859772!GO:0043623;cellular protein complex assembly;0.000392004059702442!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000418515198933966!GO:0000902;cell morphogenesis;0.000418972475244314!GO:0032989;cellular structure morphogenesis;0.000418972475244314!GO:0009142;nucleoside triphosphate biosynthetic process;0.000457999773161289!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000457999773161289!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00048156478388919!GO:0006650;glycerophospholipid metabolic process;0.000519088061251755!GO:0004721;phosphoprotein phosphatase activity;0.000564373941354049!GO:0009892;negative regulation of metabolic process;0.000574929190281795!GO:0031902;late endosome membrane;0.000583676134628922!GO:0005085;guanyl-nucleotide exchange factor activity;0.000624162215193977!GO:0030135;coated vesicle;0.000628871493463436!GO:0005875;microtubule associated complex;0.000652211421971526!GO:0016311;dephosphorylation;0.000652211421971526!GO:0006916;anti-apoptosis;0.000669672032530714!GO:0001666;response to hypoxia;0.000706405278152544!GO:0032446;protein modification by small protein conjugation;0.000708220024368357!GO:0030133;transport vesicle;0.000763686713713273!GO:0044255;cellular lipid metabolic process;0.000822817473010167!GO:0043069;negative regulation of programmed cell death;0.000822817473010167!GO:0051028;mRNA transport;0.000822817473010167!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000838379027105983!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000879195360342146!GO:0000245;spliceosome assembly;0.000893860887597907!GO:0043492;ATPase activity, coupled to movement of substances;0.000900012805002443!GO:0019902;phosphatase binding;0.000930846673026078!GO:0043066;negative regulation of apoptosis;0.000930846673026078!GO:0043566;structure-specific DNA binding;0.00093291631526362!GO:0007272;ensheathment of neurons;0.000945365674909934!GO:0008366;axon ensheathment;0.000945365674909934!GO:0030867;rough endoplasmic reticulum membrane;0.000981684682740375!GO:0003713;transcription coactivator activity;0.00100379096051843!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00106630160679472!GO:0051188;cofactor biosynthetic process;0.00107179643114283!GO:0030118;clathrin coat;0.00110330344208533!GO:0016481;negative regulation of transcription;0.00112943265500078!GO:0016567;protein ubiquitination;0.0011568212861621!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00118273012540687!GO:0005774;vacuolar membrane;0.0012187966377491!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00122531091688777!GO:0007019;microtubule depolymerization;0.00129046592914025!GO:0031072;heat shock protein binding;0.00130575963873757!GO:0003676;nucleic acid binding;0.00132864488991353!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00140361148330258!GO:0007399;nervous system development;0.00142899968444235!GO:0008026;ATP-dependent helicase activity;0.00144254375845469!GO:0031324;negative regulation of cellular metabolic process;0.00145000707632059!GO:0006752;group transfer coenzyme metabolic process;0.00149945079825968!GO:0006612;protein targeting to membrane;0.00157192452474089!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00167356371397238!GO:0004812;aminoacyl-tRNA ligase activity;0.00167356371397238!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00167356371397238!GO:0045892;negative regulation of transcription, DNA-dependent;0.00177069116209671!GO:0006402;mRNA catabolic process;0.00179065160749351!GO:0000159;protein phosphatase type 2A complex;0.00185056137650138!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00185056137650138!GO:0003729;mRNA binding;0.00193172204044051!GO:0065002;intracellular protein transport across a membrane;0.00193172204044051!GO:0051168;nuclear export;0.00194222297013577!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00194222297013577!GO:0019867;outer membrane;0.0019543826634301!GO:0042802;identical protein binding;0.00197334490374332!GO:0015980;energy derivation by oxidation of organic compounds;0.0019827867310574!GO:0043209;myelin sheath;0.00217570459085292!GO:0006470;protein amino acid dephosphorylation;0.00224369897948096!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00228017941771369!GO:0006644;phospholipid metabolic process;0.00230922395665913!GO:0031968;organelle outer membrane;0.00231729982816464!GO:0007243;protein kinase cascade;0.00240796181734819!GO:0005791;rough endoplasmic reticulum;0.00242800367770818!GO:0003724;RNA helicase activity;0.00269346187680172!GO:0043038;amino acid activation;0.0027331405106359!GO:0006418;tRNA aminoacylation for protein translation;0.0027331405106359!GO:0043039;tRNA aminoacylation;0.0027331405106359!GO:0005765;lysosomal membrane;0.00278304628819719!GO:0005741;mitochondrial outer membrane;0.00278304628819719!GO:0003697;single-stranded DNA binding;0.00282118991655887!GO:0001508;regulation of action potential;0.00290541321396941!GO:0008601;protein phosphatase type 2A regulator activity;0.00290541321396941!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00292182138182311!GO:0004386;helicase activity;0.00294236551456!GO:0022890;inorganic cation transmembrane transporter activity;0.00307265585430441!GO:0019717;synaptosome;0.00324952055203592!GO:0030384;phosphoinositide metabolic process;0.00326421460340813!GO:0006629;lipid metabolic process;0.00342743567531156!GO:0008154;actin polymerization and/or depolymerization;0.00346392520556592!GO:0030041;actin filament polymerization;0.00362358201556703!GO:0006891;intra-Golgi vesicle-mediated transport;0.0037127260545644!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00373864252969868!GO:0048468;cell development;0.00386426267757524!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.003951003818524!GO:0019208;phosphatase regulator activity;0.00397599794645594!GO:0031114;regulation of microtubule depolymerization;0.00408477122943566!GO:0007026;negative regulation of microtubule depolymerization;0.00408477122943566!GO:0051726;regulation of cell cycle;0.00418514892925!GO:0046474;glycerophospholipid biosynthetic process;0.00435223458016469!GO:0016740;transferase activity;0.00437504577235035!GO:0005099;Ras GTPase activator activity;0.00451444899832348!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00451508623792461!GO:0048487;beta-tubulin binding;0.00451977582367519!GO:0000074;regulation of progression through cell cycle;0.00469988509278467!GO:0046578;regulation of Ras protein signal transduction;0.00481002018312401!GO:0046930;pore complex;0.00484068075825267!GO:0005938;cell cortex;0.00503789410834989!GO:0008361;regulation of cell size;0.00509318999854951!GO:0016050;vesicle organization and biogenesis;0.00535038274764634!GO:0051920;peroxiredoxin activity;0.00541292323460146!GO:0044437;vacuolar part;0.00545717880213464!GO:0004722;protein serine/threonine phosphatase activity;0.00566308225198449!GO:0043087;regulation of GTPase activity;0.0058093052288079!GO:0050811;GABA receptor binding;0.00581871282349725!GO:0005839;proteasome core complex (sensu Eukaryota);0.00666051106088804!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00730206667451679!GO:0004667;prostaglandin-D synthase activity;0.00730206667451679!GO:0050802;circadian sleep/wake cycle, sleep;0.00730206667451679!GO:0022410;circadian sleep/wake cycle process;0.00730206667451679!GO:0042749;regulation of circadian sleep/wake cycle;0.00730206667451679!GO:0051087;chaperone binding;0.00730413020129772!GO:0042578;phosphoric ester hydrolase activity;0.00740126249815704!GO:0006607;NLS-bearing substrate import into nucleus;0.00748866768596496!GO:0007034;vacuolar transport;0.00757251708338287!GO:0007017;microtubule-based process;0.00758679593847802!GO:0042552;myelination;0.00824712354006176!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00832772778708203!GO:0007266;Rho protein signal transduction;0.00866469193249857!GO:0016049;cell growth;0.00869383639214067!GO:0006695;cholesterol biosynthetic process;0.00879261384441749!GO:0008286;insulin receptor signaling pathway;0.0088397593726461!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0090308669895523!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00941552062127476!GO:0051276;chromosome organization and biogenesis;0.00963257364558865!GO:0046489;phosphoinositide biosynthetic process;0.00978171850744581!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00990670973063288!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00990670973063288!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00990670973063288!GO:0009108;coenzyme biosynthetic process;0.0099796905775056!GO:0006672;ceramide metabolic process;0.0100756526875043!GO:0051427;hormone receptor binding;0.010187304222751!GO:0009117;nucleotide metabolic process;0.0102855825682141!GO:0030532;small nuclear ribonucleoprotein complex;0.0107044956971926!GO:0006665;sphingolipid metabolic process;0.0109701811811858!GO:0005885;Arp2/3 protein complex;0.0110862072240713!GO:0031109;microtubule polymerization or depolymerization;0.0115836329980435!GO:0046519;sphingoid metabolic process;0.0118841567770755!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0122548422107843!GO:0050767;regulation of neurogenesis;0.012330837196179!GO:0008186;RNA-dependent ATPase activity;0.0123605177708561!GO:0005869;dynactin complex;0.0126172990422083!GO:0007049;cell cycle;0.0126397860049699!GO:0000059;protein import into nucleus, docking;0.0127235734025724!GO:0008250;oligosaccharyl transferase complex;0.0128228923799034!GO:0006401;RNA catabolic process;0.0130625123162908!GO:0019888;protein phosphatase regulator activity;0.0132175731920403!GO:0016363;nuclear matrix;0.0134529823722123!GO:0030132;clathrin coat of coated pit;0.0136544776170664!GO:0048500;signal recognition particle;0.0138106426448196!GO:0019904;protein domain specific binding;0.0141167824522076!GO:0030139;endocytic vesicle;0.0145330093400677!GO:0051287;NAD binding;0.0149615065493161!GO:0065007;biological regulation;0.0155627548183009!GO:0005100;Rho GTPase activator activity;0.0156539385245556!GO:0043488;regulation of mRNA stability;0.0156719536935752!GO:0043487;regulation of RNA stability;0.0156719536935752!GO:0043254;regulation of protein complex assembly;0.016429026569245!GO:0035035;histone acetyltransferase binding;0.0165137356127371!GO:0035257;nuclear hormone receptor binding;0.0166793152613512!GO:0043021;ribonucleoprotein binding;0.0167877188186816!GO:0043005;neuron projection;0.0167877188186816!GO:0005813;centrosome;0.0173508126350486!GO:0051789;response to protein stimulus;0.0176705718781228!GO:0006986;response to unfolded protein;0.0176705718781228!GO:0007041;lysosomal transport;0.0183329305500924!GO:0007033;vacuole organization and biogenesis;0.0183898452698201!GO:0033116;ER-Golgi intermediate compartment membrane;0.0183898452698201!GO:0015629;actin cytoskeleton;0.0184443649298004!GO:0004680;casein kinase activity;0.0188980980909678!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0188980980909678!GO:0009214;cyclic nucleotide catabolic process;0.0188980980909678!GO:0005788;endoplasmic reticulum lumen;0.0188980980909678!GO:0012506;vesicle membrane;0.0191190746700784!GO:0042981;regulation of apoptosis;0.0192617256768065!GO:0046839;phospholipid dephosphorylation;0.0192617256768065!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0192870459293625!GO:0030258;lipid modification;0.01976456448979!GO:0033673;negative regulation of kinase activity;0.019991370469521!GO:0006469;negative regulation of protein kinase activity;0.019991370469521!GO:0051539;4 iron, 4 sulfur cluster binding;0.0201060377530966!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0201060377530966!GO:0055083;monovalent inorganic anion homeostasis;0.0201060377530966!GO:0055064;chloride ion homeostasis;0.0201060377530966!GO:0030644;cellular chloride ion homeostasis;0.0201060377530966!GO:0005048;signal sequence binding;0.0201639419793351!GO:0042158;lipoprotein biosynthetic process;0.0204707931108982!GO:0019903;protein phosphatase binding;0.0204707931108982!GO:0046488;phosphatidylinositol metabolic process;0.0219117741903332!GO:0043067;regulation of programmed cell death;0.0221451200060152!GO:0008139;nuclear localization sequence binding;0.0226961881439801!GO:0030658;transport vesicle membrane;0.0230807209436346!GO:0006904;vesicle docking during exocytosis;0.0231599563019277!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0232092810256078!GO:0022406;membrane docking;0.0232167165364405!GO:0048278;vesicle docking;0.0232167165364405!GO:0042254;ribosome biogenesis and assembly;0.023364207323278!GO:0006611;protein export from nucleus;0.023364207323278!GO:0030660;Golgi-associated vesicle membrane;0.023364207323278!GO:0050435;beta-amyloid metabolic process;0.0242709867578858!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0243152788795979!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0243152788795979!GO:0045047;protein targeting to ER;0.0243152788795979!GO:0019783;small conjugating protein-specific protease activity;0.0244470116403844!GO:0006414;translational elongation;0.0246008988330175!GO:0004674;protein serine/threonine kinase activity;0.0247952968589093!GO:0015682;ferric iron transport;0.0249385253162314!GO:0015091;ferric iron transmembrane transporter activity;0.0249385253162314!GO:0031643;positive regulation of myelination;0.0249385253162314!GO:0004298;threonine endopeptidase activity;0.0250700971266838!GO:0016563;transcription activator activity;0.0250700971266838!GO:0051348;negative regulation of transferase activity;0.0250915780084285!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.025126901290082!GO:0016125;sterol metabolic process;0.0254338929309138!GO:0030426;growth cone;0.0254338929309138!GO:0019201;nucleotide kinase activity;0.0255735275679501!GO:0065009;regulation of a molecular function;0.0258607151955872!GO:0051252;regulation of RNA metabolic process;0.0258740703539204!GO:0016301;kinase activity;0.0263324232588063!GO:0030137;COPI-coated vesicle;0.0264188516846567!GO:0051540;metal cluster binding;0.0264188516846567!GO:0051536;iron-sulfur cluster binding;0.0264188516846567!GO:0005868;cytoplasmic dynein complex;0.0265856200498886!GO:0005815;microtubule organizing center;0.0269066323805039!GO:0030663;COPI coated vesicle membrane;0.0270993198716198!GO:0030126;COPI vesicle coat;0.0270993198716198!GO:0004576;oligosaccharyl transferase activity;0.0283580811723282!GO:0000118;histone deacetylase complex;0.0285427765310886!GO:0004843;ubiquitin-specific protease activity;0.0285427765310886!GO:0004004;ATP-dependent RNA helicase activity;0.0289840860450935!GO:0019911;structural constituent of myelin sheath;0.0290605717733157!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0291075489600466!GO:0006509;membrane protein ectodomain proteolysis;0.0295283074443248!GO:0033619;membrane protein proteolysis;0.0295283074443248!GO:0030427;site of polarized growth;0.0296327902232967!GO:0030742;GTP-dependent protein binding;0.0298119731827294!GO:0008022;protein C-terminus binding;0.0298482429173624!GO:0006497;protein amino acid lipidation;0.030763964618531!GO:0016579;protein deubiquitination;0.0309544606387002!GO:0004221;ubiquitin thiolesterase activity;0.031426609758755!GO:0003690;double-stranded DNA binding;0.0316132936527405!GO:0008312;7S RNA binding;0.0316563297102224!GO:0003746;translation elongation factor activity;0.0319701728420324!GO:0007040;lysosome organization and biogenesis;0.0320843651486375!GO:0007050;cell cycle arrest;0.0323481264113943!GO:0006595;polyamine metabolic process;0.0327054803319669!GO:0044433;cytoplasmic vesicle part;0.033416521796517!GO:0051261;protein depolymerization;0.0335069808834593!GO:0044448;cell cortex part;0.0344158396804679!GO:0000287;magnesium ion binding;0.0345774481829329!GO:0005667;transcription factor complex;0.0347038587604935!GO:0006633;fatty acid biosynthetic process;0.0347038587604935!GO:0009066;aspartate family amino acid metabolic process;0.0351011635679567!GO:0016408;C-acyltransferase activity;0.0356309766853722!GO:0007006;mitochondrial membrane organization and biogenesis;0.0359971352089353!GO:0019752;carboxylic acid metabolic process;0.0364732821834837!GO:0006516;glycoprotein catabolic process;0.0368997560178115!GO:0006376;mRNA splice site selection;0.0380653557034454!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0380653557034454!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0380653557034454!GO:0000062;acyl-CoA binding;0.0383467722191984!GO:0031124;mRNA 3'-end processing;0.0385358882890631!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0385358882890631!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0385358882890631!GO:0030880;RNA polymerase complex;0.0388831337699504!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0388831337699504!GO:0015248;sterol transporter activity;0.0391052122142745!GO:0006661;phosphatidylinositol biosynthetic process;0.0391464199906065!GO:0004364;glutathione transferase activity;0.0391464199906065!GO:0006082;organic acid metabolic process;0.0399887555980825!GO:0030031;cell projection biogenesis;0.0407013095802805!GO:0044262;cellular carbohydrate metabolic process;0.0407330463794701!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0420007234358045!GO:0030176;integral to endoplasmic reticulum membrane;0.0423499302325977!GO:0030119;AP-type membrane coat adaptor complex;0.0434479015990112!GO:0030131;clathrin adaptor complex;0.0435026394562616!GO:0016491;oxidoreductase activity;0.0438479552225668!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0442602359589237!GO:0001578;microtubule bundle formation;0.0442618123628312!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0447484533666085!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0470458923781496!GO:0005092;GDP-dissociation inhibitor activity;0.0474790787773981!GO:0001887;selenium metabolic process;0.0493605769000077 | |||
|sample_id=10042 | |sample_id=10042 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=corpus callosum | |sample_tissue=corpus callosum | ||
|top_motifs=SOX2:4.42941571667;SOX5:4.34228394107;SOX{8,9,10}:3.58666692924;NFIX:3.380899961;NKX3-2:3.08778119262;RREB1:2.9976571244;ZFP161:2.84812791704;NHLH1,2:2.77911881394;RFX1:2.71125387275;HIC1:2.61396092151;RFX2..5_RFXANK_RFXAP:2.60474477281;MED-1{core}:2.59696033893;REST:2.5908109832;SOX17:2.57126774944;MYFfamily:2.3901985566;EP300:2.29832704973;ATF2:2.29574215437;TFAP2B:2.23622305731;ZBTB6:2.18569588909;MTE{core}:2.17377966716;PATZ1:2.13659958769;SMAD1..7,9:2.10092121081;GTF2I:2.07697180999;PRRX1,2:2.04916003567;ZNF423:2.02612962688;PAX5:1.99353294489;HBP1_HMGB_SSRP1_UBTF:1.99326625556;EBF1:1.95315923027;MTF1:1.95251908088;LMO2:1.94107517388;XBP1:1.92444672083;NANOG:1.91750033245;JUN:1.85558702101;TGIF1:1.84563892653;MZF1:1.84443647132;SP1:1.82084062563;CUX2:1.80093794386;LEF1_TCF7_TCF7L1,2:1.79925064536;MAZ:1.79422936337;RBPJ:1.78889719904;MAFB:1.75495532646;TFAP2{A,C}:1.73393770609;EGR1..3:1.71286911994;GATA4:1.65240357049;GTF2A1,2:1.62662855994;FOXO1,3,4:1.59661618896;TLX1..3_NFIC{dimer}:1.58497461103;FOX{D1,D2}:1.58088620037;GCM1,2:1.55313156013;SREBF1,2:1.54914730536;MYBL2:1.51211772635;PRDM1:1.48701723993;HOX{A6,A7,B6,B7}:1.46680785069;AR:1.41040755065;BREu{core}:1.37481807595;FOX{F1,F2,J1}:1.35169295642;OCT4_SOX2{dimer}:1.29731255255;POU5F1:1.27008772915;PAX6:1.26642765993;VSX1,2:1.26375013839;BPTF:1.26115944495;POU6F1:1.25514381927;NR3C1:1.24907832259;FOXP3:1.22766583143;DBP:1.14261314262;ESRRA:1.12686476852;NRF1:1.11177564816;SPZ1:1.05452633273;ZNF143:0.966747197038;TLX2:0.959967916608;ZIC1..3:0.913263022829;KLF4:0.802705393618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.732043557977;TFDP1:0.693242030913;TFCP2:0.643837072242;GFI1B:0.638899639834;XCPE1{core}:0.628798427888;ZNF238:0.615338212384;FOXP1:0.600486293836;FOXQ1:0.589322185978;NKX2-3_NKX2-5:0.587654326937;RORA:0.582308857235;FOXA2:0.581599767346;ARID5B:0.575234483725;CREB1:0.559856356629;FOXM1:0.553210689624;MEF2{A,B,C,D}:0.551905097393;NFY{A,B,C}:0.545487991924;IRF7:0.511035606625;HMX1:0.499562321853;GFI1:0.480135192745;STAT1,3:0.455955131883;PDX1:0.441488511589;HOX{A4,D4}:0.438461172209;YY1:0.421045134796;FOX{I1,J2}:0.315495170065;TOPORS:0.309600768676;AHR_ARNT_ARNT2:0.299110525176;GZF1:0.263689604769;ZNF384:0.236000284674;MYOD1:0.220816250879;STAT2,4,6:0.200292184015;PAX2:0.183760974035;CRX:0.172208291371;PBX1:0.148853642585;TFAP4:0.0740166264303;NR5A1,2:0.0490128452947;NFIL3:0.0444299813167;IRF1,2:0.0385116403359;HAND1,2:0.027635980454;NFATC1..3:-0.088371140144;CDC5L:-0.107937565902;ATF5_CREB3:-0.112114850032;bHLH_family:-0.155596438477;ZEB1:-0.164386838603;HOXA9_MEIS1:-0.184946519386;ATF4:-0.19384400605;FOXN1:-0.197545915147;TBX4,5:-0.200085223461;GATA6:-0.212364434994;NKX6-1,2:-0.218712753006;HNF4A_NR2F1,2:-0.262610844662;FOXD3:-0.270376195344;LHX3,4:-0.281844681123;ONECUT1,2:-0.289142330901;TBP:-0.28937700866;ETS1,2:-0.292957352533;SPI1:-0.312523714616;RXR{A,B,G}:-0.329630814141;ESR1:-0.363455065655;ZNF148:-0.382795637341;TP53:-0.398259774375;HSF1,2:-0.400528523867;IKZF2:-0.449087467851;NFE2L2:-0.455206692639;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.470250353871;NANOG{mouse}:-0.474869710194;HNF1A:-0.517571648068;SPIB:-0.518257584807;TEAD1:-0.525542771239;NFE2:-0.526309819809;NFE2L1:-0.540887130835;SNAI1..3:-0.559447229192;T:-0.561620444694;SRF:-0.58068200461;ELK1,4_GABP{A,B1}:-0.589082240437;PITX1..3:-0.58925916868;POU3F1..4:-0.619658079005;IKZF1:-0.664261238047;ALX4:-0.671686585628;HES1:-0.686097519028;CEBPA,B_DDIT3:-0.718062015574;HLF:-0.745746039427;ADNP_IRX_SIX_ZHX:-0.773292032412;DMAP1_NCOR{1,2}_SMARC:-0.792557726289;ATF6:-0.794138882861;FOSL2:-0.83364770611;TAL1_TCF{3,4,12}:-0.840876271006;RUNX1..3:-0.855575891214;ELF1,2,4:-0.88810780209;FOS_FOS{B,L1}_JUN{B,D}:-0.940936416522;NFKB1_REL_RELA:-0.941594792594;HMGA1,2:-0.944394043431;BACH2:-0.950105446757;MYB:-1.03909667367;UFEwm:-1.06679225772;E2F1..5:-1.06966870926;PAX3,7:-1.07625740001;PAX8:-1.09986791816;POU2F1..3:-1.16999306204;NR1H4:-1.18884041864;GLI1..3:-1.29407035394;EN1,2:-1.31276826261;NKX2-1,4:-1.34976877009;ALX1:-1.40159100442;HIF1A:-1.40497143323;RXRA_VDR{dimer}:-1.4156485579;PAX1,9:-1.46131752209;PAX4:-1.48069881963;POU1F1:-1.50792867021;NKX2-2,8:-1.58945763742;EVI1:-1.64739244067;ZBTB16:-1.73471270962;NKX3-1:-1.76773982337;FOXL1:-1.7773828639;STAT5{A,B}:-1.83245149578;NR6A1:-1.95520687578;CDX1,2,4:-1.99470016939;AIRE:-2.04998345682;TEF:-2.08861159154;HOX{A5,B5}:-2.45956922274;PPARG:-2.5883002386 | |top_motifs=SOX2:4.42941571667;SOX5:4.34228394107;SOX{8,9,10}:3.58666692924;NFIX:3.380899961;NKX3-2:3.08778119262;RREB1:2.9976571244;ZFP161:2.84812791704;NHLH1,2:2.77911881394;RFX1:2.71125387275;HIC1:2.61396092151;RFX2..5_RFXANK_RFXAP:2.60474477281;MED-1{core}:2.59696033893;REST:2.5908109832;SOX17:2.57126774944;MYFfamily:2.3901985566;EP300:2.29832704973;ATF2:2.29574215437;TFAP2B:2.23622305731;ZBTB6:2.18569588909;MTE{core}:2.17377966716;PATZ1:2.13659958769;SMAD1..7,9:2.10092121081;GTF2I:2.07697180999;PRRX1,2:2.04916003567;ZNF423:2.02612962688;PAX5:1.99353294489;HBP1_HMGB_SSRP1_UBTF:1.99326625556;EBF1:1.95315923027;MTF1:1.95251908088;LMO2:1.94107517388;XBP1:1.92444672083;NANOG:1.91750033245;JUN:1.85558702101;TGIF1:1.84563892653;MZF1:1.84443647132;SP1:1.82084062563;CUX2:1.80093794386;LEF1_TCF7_TCF7L1,2:1.79925064536;MAZ:1.79422936337;RBPJ:1.78889719904;MAFB:1.75495532646;TFAP2{A,C}:1.73393770609;EGR1..3:1.71286911994;GATA4:1.65240357049;GTF2A1,2:1.62662855994;FOXO1,3,4:1.59661618896;TLX1..3_NFIC{dimer}:1.58497461103;FOX{D1,D2}:1.58088620037;GCM1,2:1.55313156013;SREBF1,2:1.54914730536;MYBL2:1.51211772635;PRDM1:1.48701723993;HOX{A6,A7,B6,B7}:1.46680785069;AR:1.41040755065;BREu{core}:1.37481807595;FOX{F1,F2,J1}:1.35169295642;OCT4_SOX2{dimer}:1.29731255255;POU5F1:1.27008772915;PAX6:1.26642765993;VSX1,2:1.26375013839;BPTF:1.26115944495;POU6F1:1.25514381927;NR3C1:1.24907832259;FOXP3:1.22766583143;DBP:1.14261314262;ESRRA:1.12686476852;NRF1:1.11177564816;SPZ1:1.05452633273;ZNF143:0.966747197038;TLX2:0.959967916608;ZIC1..3:0.913263022829;KLF4:0.802705393618;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.732043557977;TFDP1:0.693242030913;TFCP2:0.643837072242;GFI1B:0.638899639834;XCPE1{core}:0.628798427888;ZNF238:0.615338212384;FOXP1:0.600486293836;FOXQ1:0.589322185978;NKX2-3_NKX2-5:0.587654326937;RORA:0.582308857235;FOXA2:0.581599767346;ARID5B:0.575234483725;CREB1:0.559856356629;FOXM1:0.553210689624;MEF2{A,B,C,D}:0.551905097393;NFY{A,B,C}:0.545487991924;IRF7:0.511035606625;HMX1:0.499562321853;GFI1:0.480135192745;STAT1,3:0.455955131883;PDX1:0.441488511589;HOX{A4,D4}:0.438461172209;YY1:0.421045134796;FOX{I1,J2}:0.315495170065;TOPORS:0.309600768676;AHR_ARNT_ARNT2:0.299110525176;GZF1:0.263689604769;ZNF384:0.236000284674;MYOD1:0.220816250879;STAT2,4,6:0.200292184015;PAX2:0.183760974035;CRX:0.172208291371;PBX1:0.148853642585;TFAP4:0.0740166264303;NR5A1,2:0.0490128452947;NFIL3:0.0444299813167;IRF1,2:0.0385116403359;HAND1,2:0.027635980454;NFATC1..3:-0.088371140144;CDC5L:-0.107937565902;ATF5_CREB3:-0.112114850032;bHLH_family:-0.155596438477;ZEB1:-0.164386838603;HOXA9_MEIS1:-0.184946519386;ATF4:-0.19384400605;FOXN1:-0.197545915147;TBX4,5:-0.200085223461;GATA6:-0.212364434994;NKX6-1,2:-0.218712753006;HNF4A_NR2F1,2:-0.262610844662;FOXD3:-0.270376195344;LHX3,4:-0.281844681123;ONECUT1,2:-0.289142330901;TBP:-0.28937700866;ETS1,2:-0.292957352533;SPI1:-0.312523714616;RXR{A,B,G}:-0.329630814141;ESR1:-0.363455065655;ZNF148:-0.382795637341;TP53:-0.398259774375;HSF1,2:-0.400528523867;IKZF2:-0.449087467851;NFE2L2:-0.455206692639;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.470250353871;NANOG{mouse}:-0.474869710194;HNF1A:-0.517571648068;SPIB:-0.518257584807;TEAD1:-0.525542771239;NFE2:-0.526309819809;NFE2L1:-0.540887130835;SNAI1..3:-0.559447229192;T:-0.561620444694;SRF:-0.58068200461;ELK1,4_GABP{A,B1}:-0.589082240437;PITX1..3:-0.58925916868;POU3F1..4:-0.619658079005;IKZF1:-0.664261238047;ALX4:-0.671686585628;HES1:-0.686097519028;CEBPA,B_DDIT3:-0.718062015574;HLF:-0.745746039427;ADNP_IRX_SIX_ZHX:-0.773292032412;DMAP1_NCOR{1,2}_SMARC:-0.792557726289;ATF6:-0.794138882861;FOSL2:-0.83364770611;TAL1_TCF{3,4,12}:-0.840876271006;RUNX1..3:-0.855575891214;ELF1,2,4:-0.88810780209;FOS_FOS{B,L1}_JUN{B,D}:-0.940936416522;NFKB1_REL_RELA:-0.941594792594;HMGA1,2:-0.944394043431;BACH2:-0.950105446757;MYB:-1.03909667367;UFEwm:-1.06679225772;E2F1..5:-1.06966870926;PAX3,7:-1.07625740001;PAX8:-1.09986791816;POU2F1..3:-1.16999306204;NR1H4:-1.18884041864;GLI1..3:-1.29407035394;EN1,2:-1.31276826261;NKX2-1,4:-1.34976877009;ALX1:-1.40159100442;HIF1A:-1.40497143323;RXRA_VDR{dimer}:-1.4156485579;PAX1,9:-1.46131752209;PAX4:-1.48069881963;POU1F1:-1.50792867021;NKX2-2,8:-1.58945763742;EVI1:-1.64739244067;ZBTB16:-1.73471270962;NKX3-1:-1.76773982337;FOXL1:-1.7773828639;STAT5{A,B}:-1.83245149578;NR6A1:-1.95520687578;CDX1,2,4:-1.99470016939;AIRE:-2.04998345682;TEF:-2.08861159154;HOX{A5,B5}:-2.45956922274;PPARG:-2.5883002386 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10042-101F6;search_select_hide=table117:FF:10042-101F6 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | corpus callosum, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10649 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10649
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10649
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0322 |
| 10 | 10 | 0.0224 |
| 100 | 100 | 0.265 |
| 101 | 101 | 0.792 |
| 102 | 102 | 0.857 |
| 103 | 103 | 0.0721 |
| 104 | 104 | 0.179 |
| 105 | 105 | 0.535 |
| 106 | 106 | 0.0349 |
| 107 | 107 | 0.226 |
| 108 | 108 | 0.757 |
| 109 | 109 | 0.00708 |
| 11 | 11 | 0.00855 |
| 110 | 110 | 0.0381 |
| 111 | 111 | 0.0325 |
| 112 | 112 | 0.245 |
| 113 | 113 | 0.465 |
| 114 | 114 | 0.0502 |
| 115 | 115 | 0.563 |
| 116 | 116 | 0.193 |
| 117 | 117 | 0.0145 |
| 118 | 118 | 0.129 |
| 119 | 119 | 0.12 |
| 12 | 12 | 0.769 |
| 120 | 120 | 0.083 |
| 121 | 121 | 0.956 |
| 122 | 122 | 0.596 |
| 123 | 123 | 0.549 |
| 124 | 124 | 0.349 |
| 125 | 125 | 0.388 |
| 126 | 126 | 0.181 |
| 127 | 127 | 0.448 |
| 128 | 128 | 0.191 |
| 129 | 129 | 0.533 |
| 13 | 13 | 0.00857 |
| 130 | 130 | 0.803 |
| 131 | 131 | 0.017 |
| 132 | 132 | 0.443 |
| 133 | 133 | 0.00732 |
| 134 | 134 | 0.147 |
| 135 | 135 | 0.128 |
| 136 | 136 | 0.0135 |
| 137 | 137 | 0.769 |
| 138 | 138 | 0.764 |
| 139 | 139 | 0.127 |
| 14 | 14 | 0.868 |
| 140 | 140 | 0.163 |
| 141 | 141 | 0.105 |
| 142 | 142 | 0.656 |
| 143 | 143 | 0.00891 |
| 144 | 144 | 0.824 |
| 145 | 145 | 0.286 |
| 146 | 146 | 0.939 |
| 147 | 147 | 0.684 |
| 148 | 148 | 0.339 |
| 149 | 149 | 0.441 |
| 15 | 15 | 0.0478 |
| 150 | 150 | 0.126 |
| 151 | 151 | 0.878 |
| 152 | 152 | 0.154 |
| 153 | 153 | 0.692 |
| 154 | 154 | 0.521 |
| 155 | 155 | 0.421 |
| 156 | 156 | 0.482 |
| 157 | 157 | 0.419 |
| 158 | 158 | 0.239 |
| 159 | 159 | 0.00492 |
| 16 | 16 | 0.0498 |
| 160 | 160 | 0.183 |
| 161 | 161 | 0.285 |
| 162 | 162 | 0.962 |
| 163 | 163 | 0.759 |
| 164 | 164 | 0.00332 |
| 165 | 165 | 0.152 |
| 166 | 166 | 0.93 |
| 167 | 167 | 0.442 |
| 168 | 168 | 0.819 |
| 169 | 169 | 0.0272 |
| 17 | 17 | 0.115 |
| 18 | 18 | 0.0411 |
| 19 | 19 | 0.441 |
| 2 | 2 | 0.786 |
| 20 | 20 | 0.105 |
| 21 | 21 | 0.0432 |
| 22 | 22 | 0.494 |
| 23 | 23 | 0.443 |
| 24 | 24 | 0.183 |
| 25 | 25 | 0.495 |
| 26 | 26 | 0.00449 |
| 27 | 27 | 0.726 |
| 28 | 28 | 0.85 |
| 29 | 29 | 0.00364 |
| 3 | 3 | 0.0271 |
| 30 | 30 | 0.436 |
| 31 | 31 | 0.993 |
| 32 | 32 | 0.00929 |
| 33 | 33 | 0.0778 |
| 34 | 34 | 0.889 |
| 35 | 35 | 0.355 |
| 36 | 36 | 0.117 |
| 37 | 37 | 0.036 |
| 38 | 38 | 0.415 |
| 39 | 39 | 0.443 |
| 4 | 4 | 1 |
| 40 | 40 | 0.155 |
| 41 | 41 | 0.482 |
| 42 | 42 | 0.182 |
| 43 | 43 | 0.117 |
| 44 | 44 | 0.0203 |
| 45 | 45 | 0.975 |
| 46 | 46 | 0.0251 |
| 47 | 47 | 0.0731 |
| 48 | 48 | 0.0644 |
| 49 | 49 | 0.225 |
| 5 | 5 | 0.925 |
| 50 | 50 | 0.62 |
| 51 | 51 | 0.438 |
| 52 | 52 | 0.918 |
| 53 | 53 | 0.574 |
| 54 | 54 | 0.661 |
| 55 | 55 | 0.698 |
| 56 | 56 | 0.608 |
| 57 | 57 | 0.201 |
| 58 | 58 | 0.35 |
| 59 | 59 | 0.169 |
| 6 | 6 | 0.69 |
| 60 | 60 | 0.131 |
| 61 | 61 | 0.157 |
| 62 | 62 | 0.15 |
| 63 | 63 | 0.347 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.305 |
| 66 | 66 | 0.283 |
| 67 | 67 | 0.297 |
| 68 | 68 | 0.735 |
| 69 | 69 | 0.42 |
| 7 | 7 | 0.164 |
| 70 | 70 | 0.0103 |
| 71 | 71 | 0.00669 |
| 72 | 72 | 0.445 |
| 73 | 73 | 0.0599 |
| 74 | 74 | 0.411 |
| 75 | 75 | 0.0121 |
| 76 | 76 | 0.128 |
| 77 | 77 | 0.302 |
| 78 | 78 | 7.15873e-4 |
| 79 | 79 | 0.146 |
| 8 | 8 | 0.0624 |
| 80 | 80 | 0.569 |
| 81 | 81 | 0.334 |
| 82 | 82 | 0.519 |
| 83 | 83 | 0.205 |
| 84 | 84 | 0.381 |
| 85 | 85 | 0.363 |
| 86 | 86 | 0.184 |
| 87 | 87 | 0.0076 |
| 88 | 88 | 0.687 |
| 89 | 89 | 0.281 |
| 9 | 9 | 0.776 |
| 90 | 90 | 0.0184 |
| 91 | 91 | 0.425 |
| 92 | 92 | 0.335 |
| 93 | 93 | 0.998 |
| 94 | 94 | 0.0288 |
| 95 | 95 | 0.0273 |
| 96 | 96 | 0.82 |
| 97 | 97 | 0.853 |
| 98 | 98 | 0.126 |
| 99 | 99 | 0.967 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10649
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002336 (corpus callosum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005162 (multi cell component structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000122 (neuron projection bundle)
0011215 (central nervous system cell part cluster)
0001018 (axon tract)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002473 (intercerebral commissure)
0005340 (dorsal telencephalic commissure)
0003544 (brain white matter)
0005970 (brain commissure)
0002316 (white matter)
0010317 (germ layer / neural crest derived structure)
0001020 (nervous system commissure)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0002437 (cerebral hemisphere white matter)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010042 (human corpus callosum - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
