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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005382
|accession_numbers=CAGE;DRX007973;DRR008845;DRZ000270;DRZ001655;DRZ011620;DRZ013005
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!1.94!96.74!IRF6;;chr1:201979743..201979762,+!p1@ELF3!1.94!85.41!ELF3;;chr3:189507432..189507459,+!p1@TP63!1.93!83.76!TP63;;chr3:181429704..181429722,+!p1@SOX2!1.91!80.10!SOX2;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.80!ELF3;;chr8:10588010..10588030,-!p1@SOX7!1.73!52.26!SOX7;;chrX:30327504..30327509,-!p1@NR0B1!1.67!46.13!NR0B1;;chr10:48355030..48355090,+!p1@ZNF488!1.63!53.56!ZNF488;;chr5:2751762..2751784,-!p1@IRX2!1.58!37.04!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.22!HOXD11;;chr14:38064429..38064486,-!p1@FOXA1!1.54!33.50!FOXA1;;chr11:34642612..34642646,+!p1@EHF!1.53!33.27!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.53!32.91!GRHL2;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!48.96!FOXQ1;;chr6:126240380..126240430,+!p2@NCOA7!1.48!73.61!NCOA7;;chr20:55204351..55204377,+!p1@TFAP2C!1.47!36.22!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!1.42!259.77!KLF5;;chr10:64576105..64576133,-!p1@EGR2!1.42!51.43!EGR2;;chr2:176969179..176969226,+!p2@HOXD11!1.38!22.89!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!1.35!21.23!IRF6;;chr8:102504979..102505010,+!p2@GRHL2!1.34!20.64!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!1.33!20.41!DLX5;;chr22:19748231..19748317,+!p1@TBX1!1.33!20.17!TBX1;;chr6:126240442..126240459,+!p4@NCOA7!1.32!25.13!NCOA7;;chr3:181429741..181429767,+!p2@SOX2!1.30!18.99!SOX2;;chr14:37131058..37131139,+!p1@PAX9!1.28!17.93!PAX9;;chr20:50721803..50721857,-!p2@ZFP64!1.22!24.66!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!1.22!15.45!NKX2-5;;chr7:96634850..96634874,+!p3@DLX6!1.17!13.92!DLX6;;chr6:28321971..28321995,-!p1@ZNF323!1.16!13.33!ZNF323;;chr7:73038839..73038862,-!p1@MLXIPL!1.12!12.03!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!1.11!11.91!BHLHA15;;chr1:158969752..158969780,+!p6@IFI16!1.10!20.41!IFI16;;chr5:134369905..134369972,-!p1@PITX1!1.10!17.93!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.09!52.73!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.05!10.26!ZNF323;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.03!KDM5D;;chr8:128748308..128748324,+!p2@MYC!1.03!274.52!MYC;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.54!HMGA2;;chr7:96635178..96635181,+!p1@DLX6!1.03!9.79!DLX6;;chr6:122720765..122720831,+!p1@HSF2!1.02!128.82!HSF2;;chr13:28543285..28543314,-!p2@CDX2!1.01!9.20!CDX2;;chrY:2803415..2803468,+!p1@ZFY!1.01!9.20!ZFY;;chr9:114287433..114287513,+!p1@ZNF483!0.99!23.36!ZNF483;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.39!SIX1;;chr6:126240463..126240489,+!p6@NCOA7!0.97!9.44!NCOA7;;chr2:60780607..60780624,-!p2@BCL11A!0.94!24.30!BCL11A;;chr1:247171316..247171336,-!p3@ZNF695!0.94!11.68!ZNF695;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.55!HOXD8;;chr19:1753498..1753519,+!p1@ONECUT3!0.92!7.31!ONECUT3;;chr17:17726907..17726958,-!p2@SREBF1!0.91!46.01!SREBF1;;chr12:54785074..54785122,-!p2@ZNF385A!0.90!10.97!ZNF385A;;chr12:66218003..66218018,+!p9@HMGA2!0.90!8.61!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.89!6.72!POU4F1;;chr2:176972000..176972025,+!p4@HOXD11!0.89!6.72!HOXD11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.88!6.61!TFCP2L1;;chr17:8027418..8027432,-!p1@HES7!0.88!6.61!HES7;;chr7:27153454..27153469,-!p2@HOXA3!0.88!6.61!HOXA3;;chr9:100615499..100615519,+!p1@FOXE1!0.88!6.61!FOXE1;;chr17:70117153..70117174,+!p1@SOX9!0.87!69.60!SOX9;;chr12:66218183..66218209,+!p4@HMGA2!0.87!12.62!HMGA2;;chr1:247171347..247171366,-!p2@ZNF695!0.87!12.27!ZNF695;;chr12:66218378..66218401,+!p6@HMGA2!0.87!10.15!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!0.87!7.90!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.87!6.37!EN2;;chr6:10415484..10415508,-!p3@TFAP2A!0.86!6.25!TFAP2A;;chr8:128747757..128747800,+!p7@MYC!0.85!8.49!MYC;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.13!HOXA7;;chr13:100623375..100623425,-!p1@ZIC5!0.85!6.02!ZIC5;;chr2:71127699..71127744,+!p1@VAX2!0.84!12.74!VAX2;;chr2:63277948..63277974,+!p1@OTX1!0.83!5.78!OTX1;;chr17:46703687..46703740,-!p1@HOXB9!0.83!5.78!HOXB9;;chr20:42295713..42295738,+!p2@MYBL2!0.82!35.98!MYBL2;;chr6:126240356..126240379,+!p7@NCOA7!0.82!6.96!NCOA7;;chr3:138665969..138665993,-!p2@FOXL2!0.82!5.66!FOXL2;;chr3:189507460..189507471,+!p3@TP63!0.82!5.54!TP63;;chrX:24169518..24169522,+!p8@ZFX!0.82!5.54!ZFX;;chr1:209979449..209979460,-!p3@IRF6!0.82!5.54!IRF6;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.54!SIM2;;chr19:47523058..47523114,+!p1@NPAS1!0.81!5.43!NPAS1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.44!NFE2L2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.80!12.15!SOHLH2;;chr6:1389789..1389821,+!p1@FOXF2!0.80!7.55!FOXF2;;chr1:50889103..50889145,-!p1@DMRTA2!0.80!5.31!DMRTA2;;chr1:6479968..6479986,-!p1@HES2!0.80!5.31!HES2;;chr9:129376201..129376225,+!p1@LMX1B!0.80!5.31!LMX1B;;chr8:102504690..102504704,+!p3@GRHL2!0.79!5.19!GRHL2;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.19!FOXL2;;chr2:60780753..60780800,-!p1@BCL11A!0.78!27.02!BCL11A;;chr5:2751785..2751808,-!p2@IRX2!0.78!5.07!IRX2;;chr11:47236584..47236679,+!p1@DDB2!0.77!59.10!DDB2;;chr11:8102749..8102769,+!p2@TUB!0.77!9.91!TUB;;chr12:66218573..6621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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.ctss.bed.gz
|id=FF:10550-107I1
|id=FF:10550-107I1
|is_a=EFO:0002091;;FF:0000210;;FF:0102211
|is_a=EFO:0002091;;FF:0000210;;FF:0102211
|is_obsolete=
|is_obsolete=
|library_id=CNhs11287
|library_id_phase_based=2:CNhs11287
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10550
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10550
|name=oral squamous cell carcinoma cell line:HO-1-u-1
|name=oral squamous cell carcinoma cell line:HO-1-u-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11287,LSID759,release008,COMPLETED
|profile_hcage=CNhs11287,LSID759,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=HO-1-u-1
Line 84: Line 100:
|top_motifs=VSX1,2:1.97229230821;ZEB1:1.70159751039;bHLH_family:1.59834580886;SNAI1..3:1.52834629764;ADNP_IRX_SIX_ZHX:1.27741057731;SP1:1.16379471212;NFY{A,B,C}:1.15100049767;E2F1..5:1.13761060669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11615612703;HSF1,2:0.990953606257;ATF4:0.970596174297;FOXQ1:0.961019148123;TFDP1:0.882305917064;CDX1,2,4:0.841467738632;PAX8:0.838739054656;RBPJ:0.819374133566;NANOG:0.756203913225;ELK1,4_GABP{A,B1}:0.735219013649;BREu{core}:0.729591423287;TP53:0.726291562429;NRF1:0.703427877638;POU2F1..3:0.701284778336;PITX1..3:0.698733293542;SOX2:0.69580937833;TBX4,5:0.694172690708;NR6A1:0.691176208718;CDC5L:0.581964216182;NKX2-3_NKX2-5:0.577457251715;LHX3,4:0.569896101612;SOX17:0.569372606181;ZNF143:0.565691251137;PBX1:0.550945281083;NR5A1,2:0.547173923182;PAX1,9:0.544437055032;STAT5{A,B}:0.508901735796;POU1F1:0.498852979435;TEF:0.478622398671;FOXP1:0.469753938159;ZFP161:0.467553831508;LMO2:0.465091088071;NKX3-2:0.445785783462;ZBTB16:0.443687969169;MYOD1:0.421931592006;AHR_ARNT_ARNT2:0.42181116711;ZNF384:0.420735316752;NKX2-2,8:0.419622507436;FOXA2:0.413032356195;FOXM1:0.409153988635;TBP:0.401487541147;FOX{I1,J2}:0.401362514493;HOX{A6,A7,B6,B7}:0.398455371121;FOX{F1,F2,J1}:0.389469789152;ONECUT1,2:0.380310926256;NFE2:0.372009789529;HOX{A4,D4}:0.331231084993;MYB:0.318361065251;CEBPA,B_DDIT3:0.30712635314;PAX4:0.298540255675;ESRRA:0.282383213145;ATF5_CREB3:0.280394194675;OCT4_SOX2{dimer}:0.266291685525;PRRX1,2:0.218250320087;POU5F1:0.217249256559;ZNF148:0.207379531175;NKX6-1,2:0.182722733636;HOX{A5,B5}:0.182644741793;FOXL1:0.172122513079;FOS_FOS{B,L1}_JUN{B,D}:0.14651094621;FOSL2:0.128329470398;FOXN1:0.103227305555;HNF1A:0.092986889651;XCPE1{core}:0.0729953679186;HIC1:0.0699631144989;CRX:0.0637579341751;HIF1A:0.0613455469397;RFX2..5_RFXANK_RFXAP:0.0240805387603;CREB1:0.0205070805529;LEF1_TCF7_TCF7L1,2:0.0159218789195;T:-0.00528874182479;CUX2:-0.023678757533;GATA6:-0.0257408433314;HAND1,2:-0.0274176945559;YY1:-0.0432579030912;GFI1B:-0.0436477473858;AIRE:-0.0478355180102;NFIX:-0.0531121545598;ATF2:-0.0785873386181;HES1:-0.0793254923594;NFKB1_REL_RELA:-0.0996713059684;NKX2-1,4:-0.113385617676;POU6F1:-0.115120490178;TEAD1:-0.1171294882;TOPORS:-0.121693574917;EN1,2:-0.124202985322;TFAP2B:-0.124731508529;SOX{8,9,10}:-0.13176541625;NFE2L2:-0.137092862983;MEF2{A,B,C,D}:-0.14087591809;ALX1:-0.141687615838;SOX5:-0.148724844636;HLF:-0.150080448756;GFI1:-0.162509112787;FOX{D1,D2}:-0.169970127638;PDX1:-0.18548574253;BACH2:-0.191327375502;IRF7:-0.193635777682;AR:-0.222464122981;MED-1{core}:-0.249234696364;JUN:-0.251467581052;RFX1:-0.274260354264;PATZ1:-0.279969680083;HNF4A_NR2F1,2:-0.298834798475;ARID5B:-0.30402240268;PAX2:-0.311106352665;REST:-0.328878503063;GTF2A1,2:-0.336979189152;DBP:-0.34312612241;BPTF:-0.35861335307;NFIL3:-0.358735665731;IKZF2:-0.362534312205;RORA:-0.362914995509;TLX1..3_NFIC{dimer}:-0.381674787414;HOXA9_MEIS1:-0.389672031843;PAX3,7:-0.408400099959;MYBL2:-0.412887650604;HMGA1,2:-0.421844651183;SPIB:-0.472255000744;MAZ:-0.47651549043;XBP1:-0.483842491567;FOXD3:-0.485303914507;TAL1_TCF{3,4,12}:-0.491766092591;IKZF1:-0.501678565833;FOXP3:-0.503723142606;ATF6:-0.513685451011;ZIC1..3:-0.535785278092;DMAP1_NCOR{1,2}_SMARC:-0.558301579109;ELF1,2,4:-0.567957195596;RUNX1..3:-0.576513568686;PAX6:-0.601147119843;EGR1..3:-0.602144583604;UFEwm:-0.615081466712;ETS1,2:-0.61961639095;EVI1:-0.634448305669;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639612512309;MTE{core}:-0.649907523304;GTF2I:-0.676192869474;ZNF238:-0.689509927007;KLF4:-0.704011161348;ZNF423:-0.720745299973;TFAP2{A,C}:-0.772890597116;EBF1:-0.781930016757;MTF1:-0.785825089362;STAT2,4,6:-0.790909231716;PPARG:-0.799572702334;NKX3-1:-0.806275816697;SPI1:-0.811239152203;POU3F1..4:-0.818853598557;TFCP2:-0.8241965023;NR1H4:-0.824767474329;ALX4:-0.835632962874;FOXO1,3,4:-0.8367269158;TGIF1:-0.838098928579;NHLH1,2:-0.845872687528;ESR1:-0.846001117019;RREB1:-0.857167157428;STAT1,3:-0.881883892917;EP300:-0.894079306384;SREBF1,2:-0.898486865806;HBP1_HMGB_SSRP1_UBTF:-0.902284087914;MAFB:-0.913575719825;PRDM1:-0.92890774872;GZF1:-1.00270641218;SRF:-1.00301266843;RXR{A,B,G}:-1.00546849586;GATA4:-1.04432027684;IRF1,2:-1.10830460773;NFATC1..3:-1.11958551263;PAX5:-1.12768149914;ZBTB6:-1.14384925923;NR3C1:-1.15032588894;MYFfamily:-1.19754347953;TFAP4:-1.25749200419;HMX1:-1.26794244733;MZF1:-1.31306067195;GLI1..3:-1.32404541114;GCM1,2:-1.37272488571;NFE2L1:-1.40854211249;SMAD1..7,9:-1.69496201693;SPZ1:-1.70819120427;RXRA_VDR{dimer}:-1.84088422594;NANOG{mouse}:-1.89309688382;TLX2:-2.15168987734
|top_motifs=VSX1,2:1.97229230821;ZEB1:1.70159751039;bHLH_family:1.59834580886;SNAI1..3:1.52834629764;ADNP_IRX_SIX_ZHX:1.27741057731;SP1:1.16379471212;NFY{A,B,C}:1.15100049767;E2F1..5:1.13761060669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11615612703;HSF1,2:0.990953606257;ATF4:0.970596174297;FOXQ1:0.961019148123;TFDP1:0.882305917064;CDX1,2,4:0.841467738632;PAX8:0.838739054656;RBPJ:0.819374133566;NANOG:0.756203913225;ELK1,4_GABP{A,B1}:0.735219013649;BREu{core}:0.729591423287;TP53:0.726291562429;NRF1:0.703427877638;POU2F1..3:0.701284778336;PITX1..3:0.698733293542;SOX2:0.69580937833;TBX4,5:0.694172690708;NR6A1:0.691176208718;CDC5L:0.581964216182;NKX2-3_NKX2-5:0.577457251715;LHX3,4:0.569896101612;SOX17:0.569372606181;ZNF143:0.565691251137;PBX1:0.550945281083;NR5A1,2:0.547173923182;PAX1,9:0.544437055032;STAT5{A,B}:0.508901735796;POU1F1:0.498852979435;TEF:0.478622398671;FOXP1:0.469753938159;ZFP161:0.467553831508;LMO2:0.465091088071;NKX3-2:0.445785783462;ZBTB16:0.443687969169;MYOD1:0.421931592006;AHR_ARNT_ARNT2:0.42181116711;ZNF384:0.420735316752;NKX2-2,8:0.419622507436;FOXA2:0.413032356195;FOXM1:0.409153988635;TBP:0.401487541147;FOX{I1,J2}:0.401362514493;HOX{A6,A7,B6,B7}:0.398455371121;FOX{F1,F2,J1}:0.389469789152;ONECUT1,2:0.380310926256;NFE2:0.372009789529;HOX{A4,D4}:0.331231084993;MYB:0.318361065251;CEBPA,B_DDIT3:0.30712635314;PAX4:0.298540255675;ESRRA:0.282383213145;ATF5_CREB3:0.280394194675;OCT4_SOX2{dimer}:0.266291685525;PRRX1,2:0.218250320087;POU5F1:0.217249256559;ZNF148:0.207379531175;NKX6-1,2:0.182722733636;HOX{A5,B5}:0.182644741793;FOXL1:0.172122513079;FOS_FOS{B,L1}_JUN{B,D}:0.14651094621;FOSL2:0.128329470398;FOXN1:0.103227305555;HNF1A:0.092986889651;XCPE1{core}:0.0729953679186;HIC1:0.0699631144989;CRX:0.0637579341751;HIF1A:0.0613455469397;RFX2..5_RFXANK_RFXAP:0.0240805387603;CREB1:0.0205070805529;LEF1_TCF7_TCF7L1,2:0.0159218789195;T:-0.00528874182479;CUX2:-0.023678757533;GATA6:-0.0257408433314;HAND1,2:-0.0274176945559;YY1:-0.0432579030912;GFI1B:-0.0436477473858;AIRE:-0.0478355180102;NFIX:-0.0531121545598;ATF2:-0.0785873386181;HES1:-0.0793254923594;NFKB1_REL_RELA:-0.0996713059684;NKX2-1,4:-0.113385617676;POU6F1:-0.115120490178;TEAD1:-0.1171294882;TOPORS:-0.121693574917;EN1,2:-0.124202985322;TFAP2B:-0.124731508529;SOX{8,9,10}:-0.13176541625;NFE2L2:-0.137092862983;MEF2{A,B,C,D}:-0.14087591809;ALX1:-0.141687615838;SOX5:-0.148724844636;HLF:-0.150080448756;GFI1:-0.162509112787;FOX{D1,D2}:-0.169970127638;PDX1:-0.18548574253;BACH2:-0.191327375502;IRF7:-0.193635777682;AR:-0.222464122981;MED-1{core}:-0.249234696364;JUN:-0.251467581052;RFX1:-0.274260354264;PATZ1:-0.279969680083;HNF4A_NR2F1,2:-0.298834798475;ARID5B:-0.30402240268;PAX2:-0.311106352665;REST:-0.328878503063;GTF2A1,2:-0.336979189152;DBP:-0.34312612241;BPTF:-0.35861335307;NFIL3:-0.358735665731;IKZF2:-0.362534312205;RORA:-0.362914995509;TLX1..3_NFIC{dimer}:-0.381674787414;HOXA9_MEIS1:-0.389672031843;PAX3,7:-0.408400099959;MYBL2:-0.412887650604;HMGA1,2:-0.421844651183;SPIB:-0.472255000744;MAZ:-0.47651549043;XBP1:-0.483842491567;FOXD3:-0.485303914507;TAL1_TCF{3,4,12}:-0.491766092591;IKZF1:-0.501678565833;FOXP3:-0.503723142606;ATF6:-0.513685451011;ZIC1..3:-0.535785278092;DMAP1_NCOR{1,2}_SMARC:-0.558301579109;ELF1,2,4:-0.567957195596;RUNX1..3:-0.576513568686;PAX6:-0.601147119843;EGR1..3:-0.602144583604;UFEwm:-0.615081466712;ETS1,2:-0.61961639095;EVI1:-0.634448305669;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639612512309;MTE{core}:-0.649907523304;GTF2I:-0.676192869474;ZNF238:-0.689509927007;KLF4:-0.704011161348;ZNF423:-0.720745299973;TFAP2{A,C}:-0.772890597116;EBF1:-0.781930016757;MTF1:-0.785825089362;STAT2,4,6:-0.790909231716;PPARG:-0.799572702334;NKX3-1:-0.806275816697;SPI1:-0.811239152203;POU3F1..4:-0.818853598557;TFCP2:-0.8241965023;NR1H4:-0.824767474329;ALX4:-0.835632962874;FOXO1,3,4:-0.8367269158;TGIF1:-0.838098928579;NHLH1,2:-0.845872687528;ESR1:-0.846001117019;RREB1:-0.857167157428;STAT1,3:-0.881883892917;EP300:-0.894079306384;SREBF1,2:-0.898486865806;HBP1_HMGB_SSRP1_UBTF:-0.902284087914;MAFB:-0.913575719825;PRDM1:-0.92890774872;GZF1:-1.00270641218;SRF:-1.00301266843;RXR{A,B,G}:-1.00546849586;GATA4:-1.04432027684;IRF1,2:-1.10830460773;NFATC1..3:-1.11958551263;PAX5:-1.12768149914;ZBTB6:-1.14384925923;NR3C1:-1.15032588894;MYFfamily:-1.19754347953;TFAP4:-1.25749200419;HMX1:-1.26794244733;MZF1:-1.31306067195;GLI1..3:-1.32404541114;GCM1,2:-1.37272488571;NFE2L1:-1.40854211249;SMAD1..7,9:-1.69496201693;SPZ1:-1.70819120427;RXRA_VDR{dimer}:-1.84088422594;NANOG{mouse}:-1.89309688382;TLX2:-2.15168987734
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10550-107I1;search_select_hide=table117:FF:10550-107I1
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:oral squamous cell carcinoma cell line:HO-1-u-1
Species:Human (Homo sapiens)
Library ID:CNhs11287
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell lineHO-1-u-1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005382
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11287 CAGE DRX007973 DRR008845
Accession ID Hg19

Library idBAMCTSS
CNhs11287 DRZ000270 DRZ001655
Accession ID Hg38

Library idBAMCTSS
CNhs11287 DRZ011620 DRZ013005
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0841
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.492
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0416
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0358
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.197
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0484
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.243
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.459
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.092
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0484
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0484
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11287

Jaspar motifP-value
MA0002.20.0012
MA0003.10.218
MA0004.10.186
MA0006.10.402
MA0007.10.764
MA0009.10.297
MA0014.10.0428
MA0017.10.343
MA0018.20.0162
MA0019.10.732
MA0024.12.66232e-4
MA0025.10.555
MA0027.10.119
MA0028.10.037
MA0029.10.0756
MA0030.10.297
MA0031.10.118
MA0035.20.0745
MA0038.12.32456e-4
MA0039.23.71953e-4
MA0040.10.516
MA0041.10.647
MA0042.10.694
MA0043.10.00253
MA0046.10.577
MA0047.20.112
MA0048.10.189
MA0050.11.27532e-7
MA0051.15.30532e-5
MA0052.10.117
MA0055.18.56634e-5
MA0057.10.734
MA0058.10.277
MA0059.10.289
MA0060.11.02741e-19
MA0061.10.0749
MA0062.20.0349
MA0065.20.905
MA0066.10.122
MA0067.10.494
MA0068.10.386
MA0069.10.719
MA0070.10.17
MA0071.10.618
MA0072.10.604
MA0073.10.409
MA0074.10.689
MA0076.10.0225
MA0077.10.206
MA0078.10.295
MA0079.20.804
MA0080.21.76726e-8
MA0081.10.101
MA0083.10.225
MA0084.10.378
MA0087.10.694
MA0088.10.471
MA0090.10.648
MA0091.10.00203
MA0092.10.148
MA0093.10.174
MA0099.20.599
MA0100.10.503
MA0101.10.789
MA0102.20.765
MA0103.13.48759e-5
MA0104.20.00201
MA0105.10.00405
MA0106.10.173
MA0107.10.355
MA0108.20.28
MA0111.10.99
MA0112.20.0359
MA0113.10.114
MA0114.10.968
MA0115.10.78
MA0116.10.0155
MA0117.10.56
MA0119.10.224
MA0122.10.603
MA0124.10.928
MA0125.10.0365
MA0131.10.453
MA0135.10.726
MA0136.11.04228e-4
MA0137.20.274
MA0138.20.303
MA0139.10.679
MA0140.10.067
MA0141.10.835
MA0142.10.0738
MA0143.10.869
MA0144.10.425
MA0145.10.364
MA0146.10.888
MA0147.10.004
MA0148.10.0565
MA0149.10.0687
MA0150.10.368
MA0152.10.817
MA0153.10.346
MA0154.10.022
MA0155.10.132
MA0156.10.0484
MA0157.10.284
MA0159.10.945
MA0160.10.573
MA0162.10.784
MA0163.10.0619
MA0164.10.43
MA0258.10.0962
MA0259.10.0321



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11287

Novel motifP-value
10.504
100.515
1000.147
1010.713
1020.477
1030.337
1040.447
1050.0913
1060.00109
1070.174
1080.972
1090.627
110.175
1100.511
1110.548
1120.0458
1130.558
1140.201
1150.98
1160.118
1170.901
1180.465
1190.166
120.687
1200.364
1210.65
1220.242
1230.762
1240.832
1250.829
1260.636
1270.953
1280.0253
1290.598
130.0442
1300.277
1310.38
1320.623
1330.00265
1340.367
1350.236
1360.0268
1370.153
1380.388
1390.0827
140.523
1400.316
1410.25
1420.739
1430.43
1440.327
1450.399
1460.403
1470.905
1480.221
1490.0294
150.528
1500.591
1510.38
1520.296
1530.561
1540.102
1550.747
1560.807
1570.883
1580.944
1590.43
160.483
1600.517
1610.559
1620.9
1630.195
1640.339
1650.636
1660.422
1670.144
1680.513
1690.124
170.656
180.117
190.0557
20.133
200.209
210.494
220.185
230.144
240.51
250.974
260.422
270.165
280.549
290.842
30.44
300.755
310.468
320.00113
330.413
340.267
350.175
360.212
370.323
380.665
390.963
40.224
400.0767
410.361
420.81
430.129
440.501
450.708
460.0788
470.642
480.901
490.493
50.298
500.641
510.243
520.476
530.493
540.315
550.266
560.633
570.778
580.536
590.0245
60.737
600.281
610.539
620.115
630.558
640.882
650.0834
662.28466e-5
670.672
680.3
690.604
70.823
700.0534
710.635
720.325
730.284
740.0947
750.877
760.849
770.0611
780.449
790.0231
80.41
800.0432
810.126
820.00214
830.189
840.844
850.00345
860.274
870.187
880.943
890.0751
90.015
900.308
910.0252
920.0236
930.712
940.0514
950.607
960.132
970.741
980.569
990.551



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11287


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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