FF:10550-107I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005382 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007973;DRR008845;DRZ000270;DRZ001655;DRZ011620;DRZ013005 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0102027 | |fonse_cell_line=FF:0101120,FF:0102027 | ||
|fonse_cell_line_closure=FF:0101120,FF:0102027 | |fonse_cell_line_closure=FF:0101120,FF:0102027 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHO-1-u-1.CNhs11287.10550-107I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10550-107I1 | |id=FF:10550-107I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102211 | ||
|is_obsolete= | |||
|library_id=CNhs11287 | |||
|library_id_phase_based=2:CNhs11287 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10550 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10550 | |||
|name=oral squamous cell carcinoma cell line:HO-1-u-1 | |name=oral squamous cell carcinoma cell line:HO-1-u-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11287,LSID759,release008,COMPLETED | |profile_hcage=CNhs11287,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0242150211128343,0,0,0,0,-0.160318030086386,0.0919971935600616,-0.228932089967845,-0.236404963796911,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.316893356260882,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.11787160337842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0484300422256687,-0.0485623190169364,0,0,-0.0489135849874283,0,0,0,0,0,0,0,0,0.0484300422256687,0,0,0,0,0,0,0,0,0,0.0242150211128343,0,0.0817310878102494,0,0,0,0.0310443379004188,0,0,0,0.189399841791279,-0.0196815949360143,0,0,0.0242150211128343,0,-0.0496053090120377,-0.114262179688061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.0484300422256687,0,0,-0.122091944173996,-0.355725931280975,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=50.9383 | |rna_weight_ug=50.9383 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2102 | |sample_cell_catalog=RCB2102 | ||
|sample_cell_line=HO-1-u-1 | |sample_cell_line=HO-1-u-1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.15943277981897e-271!GO:0043226;organelle;4.81985564238739e-219!GO:0043229;intracellular organelle;1.58335184629175e-218!GO:0043231;intracellular membrane-bound organelle;1.32422611095094e-213!GO:0043227;membrane-bound organelle;1.94221222109563e-213!GO:0005737;cytoplasm;3.52523602575216e-187!GO:0044422;organelle part;5.99019663207686e-165!GO:0044446;intracellular organelle part;2.27574197850226e-163!GO:0044444;cytoplasmic part;8.12863544720341e-126!GO:0032991;macromolecular complex;3.04079998451449e-112!GO:0044237;cellular metabolic process;1.80277251902825e-104!GO:0044238;primary metabolic process;4.11250130814694e-100!GO:0005634;nucleus;2.37922460791956e-97!GO:0030529;ribonucleoprotein complex;6.39604277285592e-95!GO:0043170;macromolecule metabolic process;2.6424857326186e-89!GO:0044428;nuclear part;5.69891000649461e-88!GO:0043233;organelle lumen;4.33027696701088e-85!GO:0031974;membrane-enclosed lumen;4.33027696701088e-85!GO:0003723;RNA binding;1.21456796202332e-82!GO:0005739;mitochondrion;1.02730820505477e-75!GO:0005515;protein binding;1.53841687411113e-64!GO:0006396;RNA processing;1.17985127975146e-57!GO:0005840;ribosome;1.68683657911182e-57!GO:0043234;protein complex;7.50807099766689e-57!GO:0006412;translation;3.39253846395663e-55!GO:0043283;biopolymer metabolic process;4.77661003624592e-55!GO:0031981;nuclear lumen;5.36009795207758e-52!GO:0016043;cellular component organization and biogenesis;2.30770956843979e-51!GO:0031090;organelle membrane;8.18661189989243e-51!GO:0044429;mitochondrial part;2.9673804770219e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.11752631292379e-50!GO:0010467;gene expression;2.05279603445647e-49!GO:0003735;structural constituent of ribosome;7.33213880817691e-49!GO:0009058;biosynthetic process;1.37896883601668e-47!GO:0019538;protein metabolic process;5.5812466044381e-47!GO:0044249;cellular biosynthetic process;3.19117022137142e-46!GO:0031967;organelle envelope;5.71880439005222e-45!GO:0031975;envelope;6.83198051989458e-45!GO:0043228;non-membrane-bound organelle;2.13882868458032e-42!GO:0043232;intracellular non-membrane-bound organelle;2.13882868458032e-42!GO:0044267;cellular protein metabolic process;4.01569163500209e-42!GO:0033279;ribosomal subunit;4.80936410043519e-42!GO:0044260;cellular macromolecule metabolic process;5.03916149364532e-42!GO:0015031;protein transport;5.43940574754316e-42!GO:0005829;cytosol;1.30834687815848e-41!GO:0016071;mRNA metabolic process;2.61930562415103e-41!GO:0033036;macromolecule localization;6.1754208300685e-41!GO:0009059;macromolecule biosynthetic process;1.47803527750897e-40!GO:0006259;DNA metabolic process;3.8485262764081e-39!GO:0008380;RNA splicing;5.11710370244442e-38!GO:0006996;organelle organization and biogenesis;1.24969885027554e-37!GO:0008104;protein localization;4.5343536603145e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.08401007640242e-37!GO:0045184;establishment of protein localization;1.04925629353343e-36!GO:0006397;mRNA processing;1.15095312736846e-35!GO:0046907;intracellular transport;9.71449853771545e-35!GO:0065003;macromolecular complex assembly;1.53860053746832e-33!GO:0007049;cell cycle;6.21565272157016e-33!GO:0003676;nucleic acid binding;5.93235124108592e-32!GO:0005654;nucleoplasm;2.20454811588484e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.03404349442915e-30!GO:0022607;cellular component assembly;4.93258721415662e-30!GO:0000166;nucleotide binding;6.65689028063529e-30!GO:0006886;intracellular protein transport;4.60443305027264e-29!GO:0005740;mitochondrial envelope;7.07851976273838e-29!GO:0031966;mitochondrial membrane;1.82253146188108e-27!GO:0005681;spliceosome;3.75350600087926e-27!GO:0019866;organelle inner membrane;6.20336138824173e-26!GO:0031980;mitochondrial lumen;6.344881351733e-26!GO:0005759;mitochondrial matrix;6.344881351733e-26!GO:0044451;nucleoplasm part;4.04243029766005e-25!GO:0006974;response to DNA damage stimulus;5.65507082071229e-25!GO:0016462;pyrophosphatase activity;1.64518544881152e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.72866428253624e-24!GO:0044445;cytosolic part;1.74563265707552e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.52570434206867e-24!GO:0005743;mitochondrial inner membrane;6.34709928399696e-24!GO:0022402;cell cycle process;1.05517792098603e-23!GO:0017111;nucleoside-triphosphatase activity;2.06702908844302e-23!GO:0016874;ligase activity;5.0669324289561e-23!GO:0016070;RNA metabolic process;7.50509784466452e-23!GO:0012505;endomembrane system;7.61328703897367e-23!GO:0051649;establishment of cellular localization;1.54564173095292e-22!GO:0005730;nucleolus;1.59606011334915e-22!GO:0051641;cellular localization;2.18023788804516e-22!GO:0015935;small ribosomal subunit;4.68551114830049e-22!GO:0044265;cellular macromolecule catabolic process;1.11047638291065e-21!GO:0000278;mitotic cell cycle;1.19843818520802e-21!GO:0006119;oxidative phosphorylation;1.35106919261488e-21!GO:0006457;protein folding;1.91542905384783e-21!GO:0015934;large ribosomal subunit;4.38408767839488e-21!GO:0005694;chromosome;4.80191103508375e-21!GO:0006281;DNA repair;4.9438390762705e-21!GO:0017076;purine nucleotide binding;1.05673963784305e-20!GO:0032553;ribonucleotide binding;1.34150039347602e-20!GO:0032555;purine ribonucleotide binding;1.34150039347602e-20!GO:0043285;biopolymer catabolic process;2.51785411039392e-20!GO:0006512;ubiquitin cycle;2.76267485131446e-20!GO:0044455;mitochondrial membrane part;2.76267485131446e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;6.74733757059151e-20!GO:0009057;macromolecule catabolic process;7.65599544261686e-20!GO:0006511;ubiquitin-dependent protein catabolic process;8.73493661945174e-20!GO:0022618;protein-RNA complex assembly;1.38327989315641e-19!GO:0019941;modification-dependent protein catabolic process;1.4676769247006e-19!GO:0043632;modification-dependent macromolecule catabolic process;1.4676769247006e-19!GO:0044257;cellular protein catabolic process;2.40126258066701e-19!GO:0009719;response to endogenous stimulus;9.07785667200302e-19!GO:0042254;ribosome biogenesis and assembly;1.61421865430082e-18!GO:0051186;cofactor metabolic process;1.88070663655368e-18!GO:0044248;cellular catabolic process;3.08940799288814e-18!GO:0006260;DNA replication;7.18810565898695e-18!GO:0008135;translation factor activity, nucleic acid binding;7.39618530852032e-18!GO:0044427;chromosomal part;7.76237748889266e-18!GO:0005524;ATP binding;9.51838724216991e-18!GO:0032559;adenyl ribonucleotide binding;9.71237211729271e-18!GO:0030554;adenyl nucleotide binding;1.06176672145273e-17!GO:0030163;protein catabolic process;2.49631406905707e-17!GO:0022403;cell cycle phase;5.85385203640165e-17!GO:0000087;M phase of mitotic cell cycle;5.97872453940433e-17!GO:0051301;cell division;6.16624649212833e-17!GO:0005635;nuclear envelope;7.24166943540134e-17!GO:0005761;mitochondrial ribosome;9.71157377425165e-17!GO:0000313;organellar ribosome;9.71157377425165e-17!GO:0051276;chromosome organization and biogenesis;9.77963684057711e-17!GO:0007067;mitosis;1.07043594995858e-16!GO:0005746;mitochondrial respiratory chain;3.19329625853313e-16!GO:0006605;protein targeting;7.6152513027276e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.0409910639019e-16!GO:0044453;nuclear membrane part;9.54505349001704e-16!GO:0031965;nuclear membrane;9.6843367007804e-16!GO:0016887;ATPase activity;1.04126716149485e-15!GO:0005783;endoplasmic reticulum;1.95342284939512e-15!GO:0048770;pigment granule;3.61369020938364e-15!GO:0042470;melanosome;3.61369020938364e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.70111260922483e-15!GO:0006366;transcription from RNA polymerase II promoter;4.06757080612837e-15!GO:0042623;ATPase activity, coupled;4.59227320217322e-15!GO:0000502;proteasome complex (sensu Eukaryota);4.97632345285562e-15!GO:0008134;transcription factor binding;4.97632345285562e-15!GO:0006732;coenzyme metabolic process;7.34467334427107e-15!GO:0004386;helicase activity;1.82160681004962e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.82160681004962e-14!GO:0003743;translation initiation factor activity;3.35314833205071e-14!GO:0043412;biopolymer modification;3.37845713672945e-14!GO:0000279;M phase;3.83110576286635e-14!GO:0005643;nuclear pore;4.04885751736153e-14!GO:0044432;endoplasmic reticulum part;4.42516439403369e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.38706020015277e-14!GO:0003954;NADH dehydrogenase activity;7.38706020015277e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.38706020015277e-14!GO:0051082;unfolded protein binding;8.75499738477597e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.10225828956158e-13!GO:0000375;RNA splicing, via transesterification reactions;1.10225828956158e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.10225828956158e-13!GO:0006399;tRNA metabolic process;2.46608594114427e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;3.91480523361517e-13!GO:0048193;Golgi vesicle transport;6.29833041266917e-13!GO:0006323;DNA packaging;1.31542015436749e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.58313060464785e-12!GO:0042773;ATP synthesis coupled electron transport;1.58313060464785e-12!GO:0051726;regulation of cell cycle;1.68783520670409e-12!GO:0000074;regulation of progression through cell cycle;1.85792288839022e-12!GO:0006364;rRNA processing;2.0913772279363e-12!GO:0016072;rRNA metabolic process;2.79329842577761e-12!GO:0006413;translational initiation;2.79329842577761e-12!GO:0008026;ATP-dependent helicase activity;3.55771307233306e-12!GO:0006464;protein modification process;4.77217026853893e-12!GO:0050657;nucleic acid transport;5.71209679362996e-12!GO:0051236;establishment of RNA localization;5.71209679362996e-12!GO:0050658;RNA transport;5.71209679362996e-12!GO:0006403;RNA localization;5.74242076517147e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.33155509994933e-12!GO:0045271;respiratory chain complex I;6.33155509994933e-12!GO:0005747;mitochondrial respiratory chain complex I;6.33155509994933e-12!GO:0005794;Golgi apparatus;8.24430898832947e-12!GO:0009055;electron carrier activity;9.34364647251969e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.06276276387802e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.14491434192158e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.47807805805466e-11!GO:0065002;intracellular protein transport across a membrane;1.4973574223755e-11!GO:0006913;nucleocytoplasmic transport;1.71914034115958e-11!GO:0043687;post-translational protein modification;1.85382533574297e-11!GO:0046930;pore complex;4.31123646804264e-11!GO:0016604;nuclear body;4.51791374986382e-11!GO:0051169;nuclear transport;4.57286101622152e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.69461563815913e-11!GO:0012501;programmed cell death;5.97189351526471e-11!GO:0009056;catabolic process;6.03364177322845e-11!GO:0006915;apoptosis;8.7451937735495e-11!GO:0051188;cofactor biosynthetic process;8.77505004253023e-11!GO:0008565;protein transporter activity;9.27720882118054e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.01679441597473e-10!GO:0005789;endoplasmic reticulum membrane;1.21180807925692e-10!GO:0008639;small protein conjugating enzyme activity;1.63853586800366e-10!GO:0019787;small conjugating protein ligase activity;2.7035925811679e-10!GO:0004842;ubiquitin-protein ligase activity;2.78198642268475e-10!GO:0065004;protein-DNA complex assembly;4.03049162948842e-10!GO:0016192;vesicle-mediated transport;4.14375239065327e-10!GO:0015630;microtubule cytoskeleton;4.39798053242302e-10!GO:0006446;regulation of translational initiation;4.74221899742096e-10!GO:0003712;transcription cofactor activity;7.51056729253303e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.36028418388351e-10!GO:0004812;aminoacyl-tRNA ligase activity;8.36028418388351e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.36028418388351e-10!GO:0043038;amino acid activation;1.0344902241396e-09!GO:0006418;tRNA aminoacylation for protein translation;1.0344902241396e-09!GO:0043039;tRNA aminoacylation;1.0344902241396e-09!GO:0051028;mRNA transport;1.10779325038175e-09!GO:0016779;nucleotidyltransferase activity;1.36384187470019e-09!GO:0000785;chromatin;1.66060333382835e-09!GO:0008219;cell death;2.17900155969256e-09!GO:0016265;death;2.17900155969256e-09!GO:0016740;transferase activity;2.39551713785046e-09!GO:0009259;ribonucleotide metabolic process;2.4144402324372e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.87536408370702e-09!GO:0016881;acid-amino acid ligase activity;2.87536408370702e-09!GO:0009060;aerobic respiration;5.08250847385406e-09!GO:0006163;purine nucleotide metabolic process;5.10973714072342e-09!GO:0006333;chromatin assembly or disassembly;5.56025682577136e-09!GO:0006461;protein complex assembly;5.58719978977745e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.94713365660066e-09!GO:0009108;coenzyme biosynthetic process;6.21164675642775e-09!GO:0005819;spindle;6.36835059007171e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.65438356791576e-09!GO:0043566;structure-specific DNA binding;7.90909225946033e-09!GO:0016607;nuclear speck;8.64528225407902e-09!GO:0017038;protein import;1.16222539192221e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.18194806499482e-08!GO:0006261;DNA-dependent DNA replication;1.52425796020485e-08!GO:0045333;cellular respiration;1.66872259265989e-08!GO:0007005;mitochondrion organization and biogenesis;1.95552240636579e-08!GO:0006164;purine nucleotide biosynthetic process;2.3127604990319e-08!GO:0009260;ribonucleotide biosynthetic process;2.34001232009323e-08!GO:0015986;ATP synthesis coupled proton transport;2.34001232009323e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.34001232009323e-08!GO:0016568;chromatin modification;2.58637985707767e-08!GO:0005667;transcription factor complex;2.77036140398519e-08!GO:0050794;regulation of cellular process;2.87498123918698e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.05478008452977e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.14956129976264e-08!GO:0016491;oxidoreductase activity;4.77940100280526e-08!GO:0006099;tricarboxylic acid cycle;5.62595170512905e-08!GO:0046356;acetyl-CoA catabolic process;5.62595170512905e-08!GO:0032446;protein modification by small protein conjugation;5.65676493082954e-08!GO:0009150;purine ribonucleotide metabolic process;5.69958742015813e-08!GO:0015078;hydrogen ion transmembrane transporter activity;7.27845946638573e-08!GO:0009117;nucleotide metabolic process;8.489021512407e-08!GO:0005813;centrosome;8.7865278444189e-08!GO:0016567;protein ubiquitination;9.17346047339864e-08!GO:0048523;negative regulation of cellular process;1.03612859998915e-07!GO:0051329;interphase of mitotic cell cycle;1.41847692519288e-07!GO:0006084;acetyl-CoA metabolic process;1.72872433672196e-07!GO:0009109;coenzyme catabolic process;2.19725156675223e-07!GO:0048475;coated membrane;2.20502893637751e-07!GO:0030117;membrane coat;2.20502893637751e-07!GO:0005815;microtubule organizing center;2.36275246048129e-07!GO:0008094;DNA-dependent ATPase activity;2.57563261400924e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.65286441952918e-07!GO:0009141;nucleoside triphosphate metabolic process;2.67902343726806e-07!GO:0000775;chromosome, pericentric region;2.79920602418387e-07!GO:0046034;ATP metabolic process;2.8752034961708e-07!GO:0051187;cofactor catabolic process;2.8752034961708e-07!GO:0000245;spliceosome assembly;3.57619698927817e-07!GO:0006754;ATP biosynthetic process;3.7006022053563e-07!GO:0006753;nucleoside phosphate metabolic process;3.7006022053563e-07!GO:0005768;endosome;4.31336935166744e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.84428746305121e-07!GO:0006752;group transfer coenzyme metabolic process;5.27042871545873e-07!GO:0003697;single-stranded DNA binding;7.48207552887602e-07!GO:0044431;Golgi apparatus part;7.6317374037938e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.94672354517665e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.94672354517665e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.62648074187448e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.62648074187448e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.01421029625108e-06!GO:0016787;hydrolase activity;1.06577932757515e-06!GO:0000075;cell cycle checkpoint;1.07296988596659e-06!GO:0042981;regulation of apoptosis;1.07873153404609e-06!GO:0043067;regulation of programmed cell death;1.21154599619623e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.21154599619623e-06!GO:0045259;proton-transporting ATP synthase complex;1.23522154208881e-06!GO:0051325;interphase;1.25322708894744e-06!GO:0003899;DNA-directed RNA polymerase activity;1.37913138961775e-06!GO:0005793;ER-Golgi intermediate compartment;1.66557842829931e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.77535227017649e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.77535227017649e-06!GO:0005657;replication fork;1.83023849555776e-06!GO:0051246;regulation of protein metabolic process;2.60256677553515e-06!GO:0005762;mitochondrial large ribosomal subunit;2.64013387306134e-06!GO:0000315;organellar large ribosomal subunit;2.64013387306134e-06!GO:0019829;cation-transporting ATPase activity;2.82233197173383e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.12180908654398e-06!GO:0030120;vesicle coat;3.20867797861801e-06!GO:0030662;coated vesicle membrane;3.20867797861801e-06!GO:0007051;spindle organization and biogenesis;3.3361832795566e-06!GO:0048519;negative regulation of biological process;3.34312990298893e-06!GO:0043623;cellular protein complex assembly;3.62164650390844e-06!GO:0031324;negative regulation of cellular metabolic process;3.62164650390844e-06!GO:0000151;ubiquitin ligase complex;3.78874075679505e-06!GO:0016853;isomerase activity;4.58318892720924e-06!GO:0003724;RNA helicase activity;4.60641835082361e-06!GO:0051170;nuclear import;5.83347658400545e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.89548569936262e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.10511058119174e-06!GO:0003924;GTPase activity;7.47451145092461e-06!GO:0006334;nucleosome assembly;7.62999843910112e-06!GO:0016859;cis-trans isomerase activity;8.09015863908077e-06!GO:0016563;transcription activator activity;8.12429479225529e-06!GO:0031497;chromatin assembly;8.51457038947502e-06!GO:0006916;anti-apoptosis;8.64643445977638e-06!GO:0008654;phospholipid biosynthetic process;9.29725989291638e-06!GO:0051168;nuclear export;1.07034373503506e-05!GO:0006613;cotranslational protein targeting to membrane;1.08977362865955e-05!GO:0006793;phosphorus metabolic process;1.09380338907556e-05!GO:0006796;phosphate metabolic process;1.09380338907556e-05!GO:0006606;protein import into nucleus;1.21316772950754e-05!GO:0043069;negative regulation of programmed cell death;1.25328344823376e-05!GO:0006302;double-strand break repair;1.36529498682002e-05!GO:0050662;coenzyme binding;1.45322280240298e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.58712783111667e-05!GO:0000139;Golgi membrane;1.68284438089789e-05!GO:0016564;transcription repressor activity;1.80789843035141e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.9140091860148e-05!GO:0051427;hormone receptor binding;2.14109140915952e-05!GO:0000314;organellar small ribosomal subunit;2.14864615702601e-05!GO:0005763;mitochondrial small ribosomal subunit;2.14864615702601e-05!GO:0043066;negative regulation of apoptosis;2.33409394406054e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.39998759061348e-05!GO:0003713;transcription coactivator activity;2.52540812657648e-05!GO:0046483;heterocycle metabolic process;2.68970083560964e-05!GO:0009892;negative regulation of metabolic process;2.94672293219867e-05!GO:0043021;ribonucleoprotein binding;3.08239138314335e-05!GO:0045786;negative regulation of progression through cell cycle;3.10468167325055e-05!GO:0005798;Golgi-associated vesicle;3.69068222119854e-05!GO:0003678;DNA helicase activity;3.69733039958803e-05!GO:0006091;generation of precursor metabolites and energy;4.12277805523754e-05!GO:0008033;tRNA processing;4.55790654794375e-05!GO:0035257;nuclear hormone receptor binding;4.59548940029278e-05!GO:0003682;chromatin binding;4.59548940029278e-05!GO:0003690;double-stranded DNA binding;4.62476069938472e-05!GO:0044440;endosomal part;5.00221894245095e-05!GO:0010008;endosome membrane;5.00221894245095e-05!GO:0048037;cofactor binding;5.55694830314253e-05!GO:0005525;GTP binding;5.58076002958833e-05!GO:0006352;transcription initiation;5.65204677714683e-05!GO:0044452;nucleolar part;6.32708565491577e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;6.48183424571878e-05!GO:0007017;microtubule-based process;6.62076224135518e-05!GO:0050789;regulation of biological process;7.06560801346089e-05!GO:0019222;regulation of metabolic process;7.36315024217533e-05!GO:0004298;threonine endopeptidase activity;7.40593602688365e-05!GO:0003684;damaged DNA binding;9.0762089358683e-05!GO:0016023;cytoplasmic membrane-bound vesicle;9.91444107000443e-05!GO:0031988;membrane-bound vesicle;0.000100081514838507!GO:0019843;rRNA binding;0.000108412654565398!GO:0051052;regulation of DNA metabolic process;0.000108583944351511!GO:0019752;carboxylic acid metabolic process;0.000112541945431206!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000112729069990747!GO:0006082;organic acid metabolic process;0.000112779161019923!GO:0045454;cell redox homeostasis;0.000122779101733696!GO:0008186;RNA-dependent ATPase activity;0.000123445811924312!GO:0016481;negative regulation of transcription;0.000128246791701285!GO:0016310;phosphorylation;0.000131603420285029!GO:0000776;kinetochore;0.000135687152454894!GO:0032508;DNA duplex unwinding;0.000137364439019329!GO:0032392;DNA geometric change;0.000137364439019329!GO:0016741;transferase activity, transferring one-carbon groups;0.000147198715874124!GO:0008168;methyltransferase activity;0.000149774014795673!GO:0005788;endoplasmic reticulum lumen;0.000178014562351845!GO:0005770;late endosome;0.000178014562351845!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000184989810296484!GO:0005048;signal sequence binding;0.000206145801324777!GO:0019867;outer membrane;0.000214057982942131!GO:0048471;perinuclear region of cytoplasm;0.000221121934032471!GO:0031982;vesicle;0.000226210118259934!GO:0003729;mRNA binding;0.000229553742735073!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000233853274317737!GO:0031968;organelle outer membrane;0.000234446415558235!GO:0005769;early endosome;0.000248420245610376!GO:0031072;heat shock protein binding;0.000264541971569183!GO:0031410;cytoplasmic vesicle;0.000271544383165983!GO:0006612;protein targeting to membrane;0.00027294203897277!GO:0046467;membrane lipid biosynthetic process;0.000286138874413779!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000286138874413779!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000301684690004053!GO:0030118;clathrin coat;0.000302850352907155!GO:0042802;identical protein binding;0.000314309173986636!GO:0030867;rough endoplasmic reticulum membrane;0.000327001262947787!GO:0015980;energy derivation by oxidation of organic compounds;0.000331735762503267!GO:0006520;amino acid metabolic process;0.000332148033381896!GO:0015631;tubulin binding;0.000335809870370828!GO:0004004;ATP-dependent RNA helicase activity;0.000341020759830408!GO:0006626;protein targeting to mitochondrion;0.000348398684570856!GO:0007010;cytoskeleton organization and biogenesis;0.000384662581790944!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000394886210669391!GO:0009165;nucleotide biosynthetic process;0.000400706074825389!GO:0006401;RNA catabolic process;0.00040846783731644!GO:0032561;guanyl ribonucleotide binding;0.000412150132200321!GO:0019001;guanyl nucleotide binding;0.000412150132200321!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000424783213519428!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000429645867877351!GO:0006383;transcription from RNA polymerase III promoter;0.000451199092370769!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000451199092370769!GO:0016251;general RNA polymerase II transcription factor activity;0.000471112201820364!GO:0030880;RNA polymerase complex;0.000510095171925202!GO:0006268;DNA unwinding during replication;0.000520541437162817!GO:0006402;mRNA catabolic process;0.000546977635555167!GO:0003714;transcription corepressor activity;0.00054876923889279!GO:0005741;mitochondrial outer membrane;0.000555438052789093!GO:0000049;tRNA binding;0.000576970617854287!GO:0005874;microtubule;0.000578002675103291!GO:0051920;peroxiredoxin activity;0.000589373528727127!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000602507188538995!GO:0007088;regulation of mitosis;0.000603365761970955!GO:0043624;cellular protein complex disassembly;0.000610777303705001!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000621317653857712!GO:0045893;positive regulation of transcription, DNA-dependent;0.000669636107697275!GO:0004576;oligosaccharyl transferase activity;0.000672879925896965!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000672879925896965!GO:0048522;positive regulation of cellular process;0.000673928869279163!GO:0043681;protein import into mitochondrion;0.000679017191370693!GO:0005791;rough endoplasmic reticulum;0.000684860248499657!GO:0016363;nuclear matrix;0.000690480460262193!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00071720485918226!GO:0000082;G1/S transition of mitotic cell cycle;0.000748336298890848!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00078779374290342!GO:0006405;RNA export from nucleus;0.000791543823650947!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000797649568274984!GO:0006414;translational elongation;0.000870757724427189!GO:0006310;DNA recombination;0.000871184814141786!GO:0007052;mitotic spindle organization and biogenesis;0.000871389364764619!GO:0006839;mitochondrial transport;0.000898142526315337!GO:0004527;exonuclease activity;0.000931686256573781!GO:0045941;positive regulation of transcription;0.000956607892572319!GO:0008250;oligosaccharyl transferase complex;0.000962384863242875!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00101510515584392!GO:0000428;DNA-directed RNA polymerase complex;0.00101510515584392!GO:0051087;chaperone binding;0.00102620780289997!GO:0007059;chromosome segregation;0.00103868227195652!GO:0030131;clathrin adaptor complex;0.00110774973503534!GO:0005684;U2-dependent spliceosome;0.00113714739626116!GO:0048500;signal recognition particle;0.00121280003771074!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00122201857697659!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00122201857697659!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00122201857697659!GO:0008652;amino acid biosynthetic process;0.00127181211360477!GO:0032984;macromolecular complex disassembly;0.00128562516151683!GO:0008610;lipid biosynthetic process;0.00135040860199702!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00135320530253668!GO:0030119;AP-type membrane coat adaptor complex;0.00140689041761232!GO:0003702;RNA polymerase II transcription factor activity;0.00141291583831151!GO:0051252;regulation of RNA metabolic process;0.00150963988135007!GO:0008312;7S RNA binding;0.00151095768892001!GO:0005876;spindle microtubule;0.00152603312778164!GO:0033116;ER-Golgi intermediate compartment membrane;0.00154966602829428!GO:0006767;water-soluble vitamin metabolic process;0.00165724723618206!GO:0006740;NADPH regeneration;0.00167965987849161!GO:0006098;pentose-phosphate shunt;0.00167965987849161!GO:0006891;intra-Golgi vesicle-mediated transport;0.00167965987849161!GO:0000096;sulfur amino acid metabolic process;0.00167965987849161!GO:0000059;protein import into nucleus, docking;0.00168731789212252!GO:0046474;glycerophospholipid biosynthetic process;0.0017808686616263!GO:0006519;amino acid and derivative metabolic process;0.00190735535299847!GO:0008139;nuclear localization sequence binding;0.00194167840728841!GO:0051287;NAD binding;0.00202550661741773!GO:0046489;phosphoinositide biosynthetic process;0.00208289761731311!GO:0009112;nucleobase metabolic process;0.00209512234274042!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00222094389656299!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00222094389656299!GO:0018196;peptidyl-asparagine modification;0.00226667468461199!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00226667468461199!GO:0006144;purine base metabolic process;0.00227026145202023!GO:0006275;regulation of DNA replication;0.00227575163602!GO:0007093;mitotic cell cycle checkpoint;0.00228626063311431!GO:0005885;Arp2/3 protein complex;0.00232342575336223!GO:0031252;leading edge;0.00233928695784675!GO:0043241;protein complex disassembly;0.00236473063938702!GO:0031323;regulation of cellular metabolic process;0.00237988176919316!GO:0006733;oxidoreduction coenzyme metabolic process;0.00246343074748584!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00247681440595464!GO:0015399;primary active transmembrane transporter activity;0.00247681440595464!GO:0030133;transport vesicle;0.00250750180310351!GO:0006611;protein export from nucleus;0.00272299414772626!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00278424848937052!GO:0006007;glucose catabolic process;0.00279035187506892!GO:0045892;negative regulation of transcription, DNA-dependent;0.00295164366592231!GO:0006350;transcription;0.00299152172118248!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00311857040312449!GO:0009303;rRNA transcription;0.00339617737226915!GO:0004518;nuclease activity;0.0034028546190395!GO:0007264;small GTPase mediated signal transduction;0.00344340023368947!GO:0043488;regulation of mRNA stability;0.00357010426174605!GO:0043487;regulation of RNA stability;0.00357010426174605!GO:0006338;chromatin remodeling;0.00380566741871245!GO:0000922;spindle pole;0.00381584606354691!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00386219003729805!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00390073544531952!GO:0045047;protein targeting to ER;0.00390073544531952!GO:0022411;cellular component disassembly;0.0040604565484426!GO:0030176;integral to endoplasmic reticulum membrane;0.00423579528367659!GO:0051053;negative regulation of DNA metabolic process;0.00424038986596541!GO:0006284;base-excision repair;0.00424097742053137!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00442649155344339!GO:0031124;mRNA 3'-end processing;0.00445423098374707!GO:0048487;beta-tubulin binding;0.00445775146830451!GO:0019899;enzyme binding;0.00452537865282145!GO:0035258;steroid hormone receptor binding;0.00460058805244776!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00466573197567993!GO:0030134;ER to Golgi transport vesicle;0.00466725404803273!GO:0004003;ATP-dependent DNA helicase activity;0.0050177621123395!GO:0065009;regulation of a molecular function;0.00513438542777041!GO:0051540;metal cluster binding;0.00515506804567611!GO:0051536;iron-sulfur cluster binding;0.00515506804567611!GO:0005637;nuclear inner membrane;0.00515744993834403!GO:0045045;secretory pathway;0.00534819168186302!GO:0030658;transport vesicle membrane;0.00545140546686188!GO:0006289;nucleotide-excision repair;0.00546920083555883!GO:0003711;transcription elongation regulator activity;0.00549708069129988!GO:0019783;small conjugating protein-specific protease activity;0.00553445836996817!GO:0004674;protein serine/threonine kinase activity;0.00573552248740135!GO:0007006;mitochondrial membrane organization and biogenesis;0.00573552248740135!GO:0006730;one-carbon compound metabolic process;0.00574741459603823!GO:0000786;nucleosome;0.00580258075241515!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00582432901754065!GO:0015002;heme-copper terminal oxidase activity;0.00582432901754065!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00582432901754065!GO:0004129;cytochrome-c oxidase activity;0.00582432901754065!GO:0006818;hydrogen transport;0.00582605481315683!GO:0015992;proton transport;0.00651856828644284!GO:0043414;biopolymer methylation;0.00675453239178059!GO:0032259;methylation;0.00688899641797577!GO:0006739;NADP metabolic process;0.00693254293328705!GO:0022890;inorganic cation transmembrane transporter activity;0.00698565494172168!GO:0030521;androgen receptor signaling pathway;0.00702224248003191!GO:0031570;DNA integrity checkpoint;0.00714163258705577!GO:0000086;G2/M transition of mitotic cell cycle;0.00721491421000087!GO:0046983;protein dimerization activity;0.00726066237719736!GO:0005832;chaperonin-containing T-complex;0.00729154106536983!GO:0042770;DNA damage response, signal transduction;0.00737448514235382!GO:0000725;recombinational repair;0.00756008763850364!GO:0000724;double-strand break repair via homologous recombination;0.00756008763850364!GO:0006541;glutamine metabolic process;0.00761036710775355!GO:0006769;nicotinamide metabolic process;0.00768493053073605!GO:0003746;translation elongation factor activity;0.00785623120146419!GO:0004843;ubiquitin-specific protease activity;0.0080557714827923!GO:0006643;membrane lipid metabolic process;0.00819241794223416!GO:0008180;signalosome;0.00863193679417003!GO:0000178;exosome (RNase complex);0.00881292036508878!GO:0032200;telomere organization and biogenesis;0.00891082152400322!GO:0000723;telomere maintenance;0.00891082152400322!GO:0005669;transcription factor TFIID complex;0.00896344111656787!GO:0030132;clathrin coat of coated pit;0.00896757727080713!GO:0009081;branched chain family amino acid metabolic process;0.00898125743661215!GO:0051789;response to protein stimulus;0.00922187254753846!GO:0006986;response to unfolded protein;0.00922187254753846!GO:0009451;RNA modification;0.00924473937416057!GO:0043596;nuclear replication fork;0.00924473937416057!GO:0000792;heterochromatin;0.00940545289791679!GO:0043022;ribosome binding;0.00941406434500415!GO:0007050;cell cycle arrest;0.00994862050014251!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0101172383681285!GO:0051539;4 iron, 4 sulfur cluster binding;0.0101172383681285!GO:0030660;Golgi-associated vesicle membrane;0.0101240553332435!GO:0006650;glycerophospholipid metabolic process;0.0102254291528708!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0102310182375966!GO:0042026;protein refolding;0.0104694161081213!GO:0016272;prefoldin complex;0.0105052826306259!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0106297082155082!GO:0016044;membrane organization and biogenesis;0.0109122046634397!GO:0004221;ubiquitin thiolesterase activity;0.0109572449686197!GO:0006270;DNA replication initiation;0.0111104452653973!GO:0016790;thiolester hydrolase activity;0.0111108751719638!GO:0006607;NLS-bearing substrate import into nucleus;0.0112480154500075!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0113038351612305!GO:0043189;H4/H2A histone acetyltransferase complex;0.01159385159218!GO:0000287;magnesium ion binding;0.0116174815713746!GO:0008022;protein C-terminus binding;0.0116505300311288!GO:0008017;microtubule binding;0.0116597845320108!GO:0016791;phosphoric monoester hydrolase activity;0.011773359467918!GO:0004532;exoribonuclease activity;0.011773359467918!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.011773359467918!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0117779932540671!GO:0031123;RNA 3'-end processing;0.0118352586431707!GO:0016197;endosome transport;0.011937705572271!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0126618524567788!GO:0030127;COPII vesicle coat;0.0127439476294355!GO:0012507;ER to Golgi transport vesicle membrane;0.0127439476294355!GO:0016281;eukaryotic translation initiation factor 4F complex;0.012750115768129!GO:0008287;protein serine/threonine phosphatase complex;0.0128027080323866!GO:0000339;RNA cap binding;0.0128693811192269!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0128783665533211!GO:0010468;regulation of gene expression;0.0129426092392642!GO:0043284;biopolymer biosynthetic process;0.0129705582159719!GO:0046519;sphingoid metabolic process;0.013083162158856!GO:0006378;mRNA polyadenylation;0.0131274394103776!GO:0006672;ceramide metabolic process;0.0131382224825291!GO:0006506;GPI anchor biosynthetic process;0.013257327150746!GO:0043492;ATPase activity, coupled to movement of substances;0.0132732749608374!GO:0006505;GPI anchor metabolic process;0.0135745617350753!GO:0035267;NuA4 histone acetyltransferase complex;0.0137850781361307!GO:0030137;COPI-coated vesicle;0.0137913833209343!GO:0030663;COPI coated vesicle membrane;0.0139231214416499!GO:0030126;COPI vesicle coat;0.0139231214416499!GO:0042393;histone binding;0.014060117383055!GO:0006118;electron transport;0.0140740491652542!GO:0051101;regulation of DNA binding;0.0140921479472768!GO:0048468;cell development;0.014613740737836!GO:0030036;actin cytoskeleton organization and biogenesis;0.0146710446261729!GO:0005663;DNA replication factor C complex;0.0149635809866997!GO:0005773;vacuole;0.014991819161149!GO:0009116;nucleoside metabolic process;0.0150694266026122!GO:0006376;mRNA splice site selection;0.0150694266026122!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150694266026122!GO:0006595;polyamine metabolic process;0.0151584834006844!GO:0019362;pyridine nucleotide metabolic process;0.0160364000016844!GO:0005905;coated pit;0.0163603187462573!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0164304819875185!GO:0007243;protein kinase cascade;0.0166050318671538!GO:0031625;ubiquitin protein ligase binding;0.0166358977537145!GO:0040029;regulation of gene expression, epigenetic;0.0166418291358241!GO:0046365;monosaccharide catabolic process;0.0169864061919927!GO:0046982;protein heterodimerization activity;0.0169864061919927!GO:0000228;nuclear chromosome;0.0171047542302445!GO:0030384;phosphoinositide metabolic process;0.0171625077000893!GO:0016407;acetyltransferase activity;0.017183518669521!GO:0001824;blastocyst development;0.0172392616379879!GO:0043065;positive regulation of apoptosis;0.0172884360595837!GO:0008632;apoptotic program;0.0177024782966127!GO:0008234;cysteine-type peptidase activity;0.017733608835484!GO:0008629;induction of apoptosis by intracellular signals;0.0179645332255667!GO:0006497;protein amino acid lipidation;0.0181486157345753!GO:0008156;negative regulation of DNA replication;0.0182713770171359!GO:0008601;protein phosphatase type 2A regulator activity;0.0188708555980099!GO:0030145;manganese ion binding;0.0189845661516201!GO:0006778;porphyrin metabolic process;0.0190521846097674!GO:0033013;tetrapyrrole metabolic process;0.0190521846097674!GO:0006417;regulation of translation;0.0190852822386494!GO:0051098;regulation of binding;0.0201284988597039!GO:0016584;nucleosome positioning;0.0201756717037014!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0201924366080555!GO:0001701;in utero embryonic development;0.0206568948744592!GO:0001832;blastocyst growth;0.0214756144991276!GO:0043068;positive regulation of programmed cell death;0.021679791913834!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0217350737212551!GO:0000097;sulfur amino acid biosynthetic process;0.0222307643077101!GO:0046966;thyroid hormone receptor binding;0.0230432748595058!GO:0000209;protein polyubiquitination;0.0235905157931338!GO:0004300;enoyl-CoA hydratase activity;0.023668859666873!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0238856876085838!GO:0000152;nuclear ubiquitin ligase complex;0.0241012865631679!GO:0007021;tubulin folding;0.024392048678893!GO:0006892;post-Golgi vesicle-mediated transport;0.0247309922943342!GO:0005844;polysome;0.0247709256857737!GO:0043601;nuclear replisome;0.0248668089902255!GO:0030894;replisome;0.0248668089902255!GO:0051656;establishment of organelle localization;0.0252029568612976!GO:0006400;tRNA modification;0.0255756574807417!GO:0008637;apoptotic mitochondrial changes;0.0256145028209923!GO:0046164;alcohol catabolic process;0.0258500852833103!GO:0019320;hexose catabolic process;0.0260598465797366!GO:0044450;microtubule organizing center part;0.0263864295695532!GO:0030125;clathrin vesicle coat;0.0267424000442754!GO:0030665;clathrin coated vesicle membrane;0.0267424000442754!GO:0043433;negative regulation of transcription factor activity;0.026932837924758!GO:0006779;porphyrin biosynthetic process;0.027162014304517!GO:0033014;tetrapyrrole biosynthetic process;0.027162014304517!GO:0019318;hexose metabolic process;0.0275045271953145!GO:0017166;vinculin binding;0.0275262996643704!GO:0006081;aldehyde metabolic process;0.0275662896386119!GO:0031529;ruffle organization and biogenesis;0.0278118951914295!GO:0031970;organelle envelope lumen;0.0278332818916816!GO:0065007;biological regulation;0.0279784045395838!GO:0009124;nucleoside monophosphate biosynthetic process;0.0283369365078065!GO:0009123;nucleoside monophosphate metabolic process;0.0283369365078065!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0288679708419958!GO:0008097;5S rRNA binding;0.0291905432352649!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0292691498079737!GO:0008276;protein methyltransferase activity;0.029359660277183!GO:0046112;nucleobase biosynthetic process;0.0295791268373714!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0296258886426795!GO:0005996;monosaccharide metabolic process;0.0300762401942389!GO:0019887;protein kinase regulator activity;0.0302352428334045!GO:0000077;DNA damage checkpoint;0.0302601360467733!GO:0008408;3'-5' exonuclease activity;0.0307912932394959!GO:0030433;ER-associated protein catabolic process;0.0309125074211002!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0309125074211002!GO:0008361;regulation of cell size;0.0314567383285492!GO:0044262;cellular carbohydrate metabolic process;0.0315011523224406!GO:0009113;purine base biosynthetic process;0.0316356324252452!GO:0009161;ribonucleoside monophosphate metabolic process;0.0320558223735371!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0320558223735371!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0320689545753751!GO:0001889;liver development;0.0325507160631933!GO:0051338;regulation of transferase activity;0.0327974601861784!GO:0031577;spindle checkpoint;0.0327974601861784!GO:0006950;response to stress;0.0333935341343825!GO:0032774;RNA biosynthetic process;0.0335977489823984!GO:0042168;heme metabolic process;0.0340530595098061!GO:0005092;GDP-dissociation inhibitor activity;0.0347066999556269!GO:0005784;translocon complex;0.0347066999556269!GO:0004722;protein serine/threonine phosphatase activity;0.0351762980823547!GO:0000123;histone acetyltransferase complex;0.0351879770087664!GO:0009067;aspartate family amino acid biosynthetic process;0.035753800058847!GO:0030659;cytoplasmic vesicle membrane;0.035769610013951!GO:0006564;L-serine biosynthetic process;0.0359825726929237!GO:0005732;small nucleolar ribonucleoprotein complex;0.0362427017254126!GO:0005758;mitochondrial intermembrane space;0.0362738546387257!GO:0000781;chromosome, telomeric region;0.0368149184219316!GO:0004448;isocitrate dehydrogenase activity;0.0370140034309121!GO:0008536;Ran GTPase binding;0.0373339077298641!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.037552269519098!GO:0046128;purine ribonucleoside metabolic process;0.0376407036831817!GO:0042278;purine nucleoside metabolic process;0.0376407036831817!GO:0006351;transcription, DNA-dependent;0.0382718305863234!GO:0008538;proteasome activator activity;0.0383034001880576!GO:0003756;protein disulfide isomerase activity;0.0384211575655276!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0384211575655276!GO:0031406;carboxylic acid binding;0.0388473864794735!GO:0030503;regulation of cell redox homeostasis;0.0388473864794735!GO:0008426;protein kinase C inhibitor activity;0.0390750792628734!GO:0031371;ubiquitin conjugating enzyme complex;0.0394642553373526!GO:0004239;methionyl aminopeptidase activity;0.0402185380324741!GO:0030496;midbody;0.0404760710982376!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0406975631054038!GO:0001558;regulation of cell growth;0.0411257662860173!GO:0050178;phenylpyruvate tautomerase activity;0.0417586937948929!GO:0017134;fibroblast growth factor binding;0.0417889865575892!GO:0003887;DNA-directed DNA polymerase activity;0.0418613961255605!GO:0005680;anaphase-promoting complex;0.0424248154488282!GO:0004523;ribonuclease H activity;0.0424248154488282!GO:0000819;sister chromatid segregation;0.0431159030007079!GO:0033673;negative regulation of kinase activity;0.0431770625954169!GO:0006469;negative regulation of protein kinase activity;0.0431770625954169!GO:0000910;cytokinesis;0.0431770625954169!GO:0031326;regulation of cellular biosynthetic process;0.0434690101704413!GO:0019206;nucleoside kinase activity;0.0436487903296035!GO:0022406;membrane docking;0.0443580662548406!GO:0048278;vesicle docking;0.0443580662548406!GO:0006415;translational termination;0.0447921461823152!GO:0030140;trans-Golgi network transport vesicle;0.0448630498139555!GO:0000726;non-recombinational repair;0.0448893684676509!GO:0031503;protein complex localization;0.0450642559203405!GO:0001726;ruffle;0.0456119407412452!GO:0047485;protein N-terminus binding;0.0457030006298572!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0458123272334665!GO:0048518;positive regulation of biological process;0.0458123272334665!GO:0006984;ER-nuclear signaling pathway;0.045866795892277!GO:0030518;steroid hormone receptor signaling pathway;0.0460343184148718!GO:0016311;dephosphorylation;0.0463396391243611!GO:0050681;androgen receptor binding;0.0468367271511507!GO:0033170;DNA-protein loading ATPase activity;0.0468367271511507!GO:0003689;DNA clamp loader activity;0.0468367271511507!GO:0006783;heme biosynthetic process;0.046839225508037!GO:0043631;RNA polyadenylation;0.0473121308573576!GO:0042158;lipoprotein biosynthetic process;0.0473931957687059!GO:0000323;lytic vacuole;0.0473931957687059!GO:0005764;lysosome;0.0473931957687059!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0474143974153643!GO:0003923;GPI-anchor transamidase activity;0.0474529215234086!GO:0016255;attachment of GPI anchor to protein;0.0474529215234086!GO:0042765;GPI-anchor transamidase complex;0.0474529215234086!GO:0016049;cell growth;0.0478332067071709!GO:0006406;mRNA export from nucleus;0.0480994776045556!GO:0007004;telomere maintenance via telomerase;0.0482504309527119!GO:0000159;protein phosphatase type 2A complex;0.0485119995638474!GO:0032507;maintenance of cellular protein localization;0.0499690546895963 | |||
|sample_id=10550 | |sample_id=10550 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=VSX1,2:1.97229230821;ZEB1:1.70159751039;bHLH_family:1.59834580886;SNAI1..3:1.52834629764;ADNP_IRX_SIX_ZHX:1.27741057731;SP1:1.16379471212;NFY{A,B,C}:1.15100049767;E2F1..5:1.13761060669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11615612703;HSF1,2:0.990953606257;ATF4:0.970596174297;FOXQ1:0.961019148123;TFDP1:0.882305917064;CDX1,2,4:0.841467738632;PAX8:0.838739054656;RBPJ:0.819374133566;NANOG:0.756203913225;ELK1,4_GABP{A,B1}:0.735219013649;BREu{core}:0.729591423287;TP53:0.726291562429;NRF1:0.703427877638;POU2F1..3:0.701284778336;PITX1..3:0.698733293542;SOX2:0.69580937833;TBX4,5:0.694172690708;NR6A1:0.691176208718;CDC5L:0.581964216182;NKX2-3_NKX2-5:0.577457251715;LHX3,4:0.569896101612;SOX17:0.569372606181;ZNF143:0.565691251137;PBX1:0.550945281083;NR5A1,2:0.547173923182;PAX1,9:0.544437055032;STAT5{A,B}:0.508901735796;POU1F1:0.498852979435;TEF:0.478622398671;FOXP1:0.469753938159;ZFP161:0.467553831508;LMO2:0.465091088071;NKX3-2:0.445785783462;ZBTB16:0.443687969169;MYOD1:0.421931592006;AHR_ARNT_ARNT2:0.42181116711;ZNF384:0.420735316752;NKX2-2,8:0.419622507436;FOXA2:0.413032356195;FOXM1:0.409153988635;TBP:0.401487541147;FOX{I1,J2}:0.401362514493;HOX{A6,A7,B6,B7}:0.398455371121;FOX{F1,F2,J1}:0.389469789152;ONECUT1,2:0.380310926256;NFE2:0.372009789529;HOX{A4,D4}:0.331231084993;MYB:0.318361065251;CEBPA,B_DDIT3:0.30712635314;PAX4:0.298540255675;ESRRA:0.282383213145;ATF5_CREB3:0.280394194675;OCT4_SOX2{dimer}:0.266291685525;PRRX1,2:0.218250320087;POU5F1:0.217249256559;ZNF148:0.207379531175;NKX6-1,2:0.182722733636;HOX{A5,B5}:0.182644741793;FOXL1:0.172122513079;FOS_FOS{B,L1}_JUN{B,D}:0.14651094621;FOSL2:0.128329470398;FOXN1:0.103227305555;HNF1A:0.092986889651;XCPE1{core}:0.0729953679186;HIC1:0.0699631144989;CRX:0.0637579341751;HIF1A:0.0613455469397;RFX2..5_RFXANK_RFXAP:0.0240805387603;CREB1:0.0205070805529;LEF1_TCF7_TCF7L1,2:0.0159218789195;T:-0.00528874182479;CUX2:-0.023678757533;GATA6:-0.0257408433314;HAND1,2:-0.0274176945559;YY1:-0.0432579030912;GFI1B:-0.0436477473858;AIRE:-0.0478355180102;NFIX:-0.0531121545598;ATF2:-0.0785873386181;HES1:-0.0793254923594;NFKB1_REL_RELA:-0.0996713059684;NKX2-1,4:-0.113385617676;POU6F1:-0.115120490178;TEAD1:-0.1171294882;TOPORS:-0.121693574917;EN1,2:-0.124202985322;TFAP2B:-0.124731508529;SOX{8,9,10}:-0.13176541625;NFE2L2:-0.137092862983;MEF2{A,B,C,D}:-0.14087591809;ALX1:-0.141687615838;SOX5:-0.148724844636;HLF:-0.150080448756;GFI1:-0.162509112787;FOX{D1,D2}:-0.169970127638;PDX1:-0.18548574253;BACH2:-0.191327375502;IRF7:-0.193635777682;AR:-0.222464122981;MED-1{core}:-0.249234696364;JUN:-0.251467581052;RFX1:-0.274260354264;PATZ1:-0.279969680083;HNF4A_NR2F1,2:-0.298834798475;ARID5B:-0.30402240268;PAX2:-0.311106352665;REST:-0.328878503063;GTF2A1,2:-0.336979189152;DBP:-0.34312612241;BPTF:-0.35861335307;NFIL3:-0.358735665731;IKZF2:-0.362534312205;RORA:-0.362914995509;TLX1..3_NFIC{dimer}:-0.381674787414;HOXA9_MEIS1:-0.389672031843;PAX3,7:-0.408400099959;MYBL2:-0.412887650604;HMGA1,2:-0.421844651183;SPIB:-0.472255000744;MAZ:-0.47651549043;XBP1:-0.483842491567;FOXD3:-0.485303914507;TAL1_TCF{3,4,12}:-0.491766092591;IKZF1:-0.501678565833;FOXP3:-0.503723142606;ATF6:-0.513685451011;ZIC1..3:-0.535785278092;DMAP1_NCOR{1,2}_SMARC:-0.558301579109;ELF1,2,4:-0.567957195596;RUNX1..3:-0.576513568686;PAX6:-0.601147119843;EGR1..3:-0.602144583604;UFEwm:-0.615081466712;ETS1,2:-0.61961639095;EVI1:-0.634448305669;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639612512309;MTE{core}:-0.649907523304;GTF2I:-0.676192869474;ZNF238:-0.689509927007;KLF4:-0.704011161348;ZNF423:-0.720745299973;TFAP2{A,C}:-0.772890597116;EBF1:-0.781930016757;MTF1:-0.785825089362;STAT2,4,6:-0.790909231716;PPARG:-0.799572702334;NKX3-1:-0.806275816697;SPI1:-0.811239152203;POU3F1..4:-0.818853598557;TFCP2:-0.8241965023;NR1H4:-0.824767474329;ALX4:-0.835632962874;FOXO1,3,4:-0.8367269158;TGIF1:-0.838098928579;NHLH1,2:-0.845872687528;ESR1:-0.846001117019;RREB1:-0.857167157428;STAT1,3:-0.881883892917;EP300:-0.894079306384;SREBF1,2:-0.898486865806;HBP1_HMGB_SSRP1_UBTF:-0.902284087914;MAFB:-0.913575719825;PRDM1:-0.92890774872;GZF1:-1.00270641218;SRF:-1.00301266843;RXR{A,B,G}:-1.00546849586;GATA4:-1.04432027684;IRF1,2:-1.10830460773;NFATC1..3:-1.11958551263;PAX5:-1.12768149914;ZBTB6:-1.14384925923;NR3C1:-1.15032588894;MYFfamily:-1.19754347953;TFAP4:-1.25749200419;HMX1:-1.26794244733;MZF1:-1.31306067195;GLI1..3:-1.32404541114;GCM1,2:-1.37272488571;NFE2L1:-1.40854211249;SMAD1..7,9:-1.69496201693;SPZ1:-1.70819120427;RXRA_VDR{dimer}:-1.84088422594;NANOG{mouse}:-1.89309688382;TLX2:-2.15168987734 | |top_motifs=VSX1,2:1.97229230821;ZEB1:1.70159751039;bHLH_family:1.59834580886;SNAI1..3:1.52834629764;ADNP_IRX_SIX_ZHX:1.27741057731;SP1:1.16379471212;NFY{A,B,C}:1.15100049767;E2F1..5:1.13761060669;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.11615612703;HSF1,2:0.990953606257;ATF4:0.970596174297;FOXQ1:0.961019148123;TFDP1:0.882305917064;CDX1,2,4:0.841467738632;PAX8:0.838739054656;RBPJ:0.819374133566;NANOG:0.756203913225;ELK1,4_GABP{A,B1}:0.735219013649;BREu{core}:0.729591423287;TP53:0.726291562429;NRF1:0.703427877638;POU2F1..3:0.701284778336;PITX1..3:0.698733293542;SOX2:0.69580937833;TBX4,5:0.694172690708;NR6A1:0.691176208718;CDC5L:0.581964216182;NKX2-3_NKX2-5:0.577457251715;LHX3,4:0.569896101612;SOX17:0.569372606181;ZNF143:0.565691251137;PBX1:0.550945281083;NR5A1,2:0.547173923182;PAX1,9:0.544437055032;STAT5{A,B}:0.508901735796;POU1F1:0.498852979435;TEF:0.478622398671;FOXP1:0.469753938159;ZFP161:0.467553831508;LMO2:0.465091088071;NKX3-2:0.445785783462;ZBTB16:0.443687969169;MYOD1:0.421931592006;AHR_ARNT_ARNT2:0.42181116711;ZNF384:0.420735316752;NKX2-2,8:0.419622507436;FOXA2:0.413032356195;FOXM1:0.409153988635;TBP:0.401487541147;FOX{I1,J2}:0.401362514493;HOX{A6,A7,B6,B7}:0.398455371121;FOX{F1,F2,J1}:0.389469789152;ONECUT1,2:0.380310926256;NFE2:0.372009789529;HOX{A4,D4}:0.331231084993;MYB:0.318361065251;CEBPA,B_DDIT3:0.30712635314;PAX4:0.298540255675;ESRRA:0.282383213145;ATF5_CREB3:0.280394194675;OCT4_SOX2{dimer}:0.266291685525;PRRX1,2:0.218250320087;POU5F1:0.217249256559;ZNF148:0.207379531175;NKX6-1,2:0.182722733636;HOX{A5,B5}:0.182644741793;FOXL1:0.172122513079;FOS_FOS{B,L1}_JUN{B,D}:0.14651094621;FOSL2:0.128329470398;FOXN1:0.103227305555;HNF1A:0.092986889651;XCPE1{core}:0.0729953679186;HIC1:0.0699631144989;CRX:0.0637579341751;HIF1A:0.0613455469397;RFX2..5_RFXANK_RFXAP:0.0240805387603;CREB1:0.0205070805529;LEF1_TCF7_TCF7L1,2:0.0159218789195;T:-0.00528874182479;CUX2:-0.023678757533;GATA6:-0.0257408433314;HAND1,2:-0.0274176945559;YY1:-0.0432579030912;GFI1B:-0.0436477473858;AIRE:-0.0478355180102;NFIX:-0.0531121545598;ATF2:-0.0785873386181;HES1:-0.0793254923594;NFKB1_REL_RELA:-0.0996713059684;NKX2-1,4:-0.113385617676;POU6F1:-0.115120490178;TEAD1:-0.1171294882;TOPORS:-0.121693574917;EN1,2:-0.124202985322;TFAP2B:-0.124731508529;SOX{8,9,10}:-0.13176541625;NFE2L2:-0.137092862983;MEF2{A,B,C,D}:-0.14087591809;ALX1:-0.141687615838;SOX5:-0.148724844636;HLF:-0.150080448756;GFI1:-0.162509112787;FOX{D1,D2}:-0.169970127638;PDX1:-0.18548574253;BACH2:-0.191327375502;IRF7:-0.193635777682;AR:-0.222464122981;MED-1{core}:-0.249234696364;JUN:-0.251467581052;RFX1:-0.274260354264;PATZ1:-0.279969680083;HNF4A_NR2F1,2:-0.298834798475;ARID5B:-0.30402240268;PAX2:-0.311106352665;REST:-0.328878503063;GTF2A1,2:-0.336979189152;DBP:-0.34312612241;BPTF:-0.35861335307;NFIL3:-0.358735665731;IKZF2:-0.362534312205;RORA:-0.362914995509;TLX1..3_NFIC{dimer}:-0.381674787414;HOXA9_MEIS1:-0.389672031843;PAX3,7:-0.408400099959;MYBL2:-0.412887650604;HMGA1,2:-0.421844651183;SPIB:-0.472255000744;MAZ:-0.47651549043;XBP1:-0.483842491567;FOXD3:-0.485303914507;TAL1_TCF{3,4,12}:-0.491766092591;IKZF1:-0.501678565833;FOXP3:-0.503723142606;ATF6:-0.513685451011;ZIC1..3:-0.535785278092;DMAP1_NCOR{1,2}_SMARC:-0.558301579109;ELF1,2,4:-0.567957195596;RUNX1..3:-0.576513568686;PAX6:-0.601147119843;EGR1..3:-0.602144583604;UFEwm:-0.615081466712;ETS1,2:-0.61961639095;EVI1:-0.634448305669;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.639612512309;MTE{core}:-0.649907523304;GTF2I:-0.676192869474;ZNF238:-0.689509927007;KLF4:-0.704011161348;ZNF423:-0.720745299973;TFAP2{A,C}:-0.772890597116;EBF1:-0.781930016757;MTF1:-0.785825089362;STAT2,4,6:-0.790909231716;PPARG:-0.799572702334;NKX3-1:-0.806275816697;SPI1:-0.811239152203;POU3F1..4:-0.818853598557;TFCP2:-0.8241965023;NR1H4:-0.824767474329;ALX4:-0.835632962874;FOXO1,3,4:-0.8367269158;TGIF1:-0.838098928579;NHLH1,2:-0.845872687528;ESR1:-0.846001117019;RREB1:-0.857167157428;STAT1,3:-0.881883892917;EP300:-0.894079306384;SREBF1,2:-0.898486865806;HBP1_HMGB_SSRP1_UBTF:-0.902284087914;MAFB:-0.913575719825;PRDM1:-0.92890774872;GZF1:-1.00270641218;SRF:-1.00301266843;RXR{A,B,G}:-1.00546849586;GATA4:-1.04432027684;IRF1,2:-1.10830460773;NFATC1..3:-1.11958551263;PAX5:-1.12768149914;ZBTB6:-1.14384925923;NR3C1:-1.15032588894;MYFfamily:-1.19754347953;TFAP4:-1.25749200419;HMX1:-1.26794244733;MZF1:-1.31306067195;GLI1..3:-1.32404541114;GCM1,2:-1.37272488571;NFE2L1:-1.40854211249;SMAD1..7,9:-1.69496201693;SPZ1:-1.70819120427;RXRA_VDR{dimer}:-1.84088422594;NANOG{mouse}:-1.89309688382;TLX2:-2.15168987734 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10550-107I1;search_select_hide=table117:FF:10550-107I1 | |||
}} | }} | ||
Latest revision as of 14:28, 3 June 2020
| Name: | oral squamous cell carcinoma cell line:HO-1-u-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11287 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11287
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11287
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.504 |
| 10 | 10 | 0.515 |
| 100 | 100 | 0.147 |
| 101 | 101 | 0.713 |
| 102 | 102 | 0.477 |
| 103 | 103 | 0.337 |
| 104 | 104 | 0.447 |
| 105 | 105 | 0.0913 |
| 106 | 106 | 0.00109 |
| 107 | 107 | 0.174 |
| 108 | 108 | 0.972 |
| 109 | 109 | 0.627 |
| 11 | 11 | 0.175 |
| 110 | 110 | 0.511 |
| 111 | 111 | 0.548 |
| 112 | 112 | 0.0458 |
| 113 | 113 | 0.558 |
| 114 | 114 | 0.201 |
| 115 | 115 | 0.98 |
| 116 | 116 | 0.118 |
| 117 | 117 | 0.901 |
| 118 | 118 | 0.465 |
| 119 | 119 | 0.166 |
| 12 | 12 | 0.687 |
| 120 | 120 | 0.364 |
| 121 | 121 | 0.65 |
| 122 | 122 | 0.242 |
| 123 | 123 | 0.762 |
| 124 | 124 | 0.832 |
| 125 | 125 | 0.829 |
| 126 | 126 | 0.636 |
| 127 | 127 | 0.953 |
| 128 | 128 | 0.0253 |
| 129 | 129 | 0.598 |
| 13 | 13 | 0.0442 |
| 130 | 130 | 0.277 |
| 131 | 131 | 0.38 |
| 132 | 132 | 0.623 |
| 133 | 133 | 0.00265 |
| 134 | 134 | 0.367 |
| 135 | 135 | 0.236 |
| 136 | 136 | 0.0268 |
| 137 | 137 | 0.153 |
| 138 | 138 | 0.388 |
| 139 | 139 | 0.0827 |
| 14 | 14 | 0.523 |
| 140 | 140 | 0.316 |
| 141 | 141 | 0.25 |
| 142 | 142 | 0.739 |
| 143 | 143 | 0.43 |
| 144 | 144 | 0.327 |
| 145 | 145 | 0.399 |
| 146 | 146 | 0.403 |
| 147 | 147 | 0.905 |
| 148 | 148 | 0.221 |
| 149 | 149 | 0.0294 |
| 15 | 15 | 0.528 |
| 150 | 150 | 0.591 |
| 151 | 151 | 0.38 |
| 152 | 152 | 0.296 |
| 153 | 153 | 0.561 |
| 154 | 154 | 0.102 |
| 155 | 155 | 0.747 |
| 156 | 156 | 0.807 |
| 157 | 157 | 0.883 |
| 158 | 158 | 0.944 |
| 159 | 159 | 0.43 |
| 16 | 16 | 0.483 |
| 160 | 160 | 0.517 |
| 161 | 161 | 0.559 |
| 162 | 162 | 0.9 |
| 163 | 163 | 0.195 |
| 164 | 164 | 0.339 |
| 165 | 165 | 0.636 |
| 166 | 166 | 0.422 |
| 167 | 167 | 0.144 |
| 168 | 168 | 0.513 |
| 169 | 169 | 0.124 |
| 17 | 17 | 0.656 |
| 18 | 18 | 0.117 |
| 19 | 19 | 0.0557 |
| 2 | 2 | 0.133 |
| 20 | 20 | 0.209 |
| 21 | 21 | 0.494 |
| 22 | 22 | 0.185 |
| 23 | 23 | 0.144 |
| 24 | 24 | 0.51 |
| 25 | 25 | 0.974 |
| 26 | 26 | 0.422 |
| 27 | 27 | 0.165 |
| 28 | 28 | 0.549 |
| 29 | 29 | 0.842 |
| 3 | 3 | 0.44 |
| 30 | 30 | 0.755 |
| 31 | 31 | 0.468 |
| 32 | 32 | 0.00113 |
| 33 | 33 | 0.413 |
| 34 | 34 | 0.267 |
| 35 | 35 | 0.175 |
| 36 | 36 | 0.212 |
| 37 | 37 | 0.323 |
| 38 | 38 | 0.665 |
| 39 | 39 | 0.963 |
| 4 | 4 | 0.224 |
| 40 | 40 | 0.0767 |
| 41 | 41 | 0.361 |
| 42 | 42 | 0.81 |
| 43 | 43 | 0.129 |
| 44 | 44 | 0.501 |
| 45 | 45 | 0.708 |
| 46 | 46 | 0.0788 |
| 47 | 47 | 0.642 |
| 48 | 48 | 0.901 |
| 49 | 49 | 0.493 |
| 5 | 5 | 0.298 |
| 50 | 50 | 0.641 |
| 51 | 51 | 0.243 |
| 52 | 52 | 0.476 |
| 53 | 53 | 0.493 |
| 54 | 54 | 0.315 |
| 55 | 55 | 0.266 |
| 56 | 56 | 0.633 |
| 57 | 57 | 0.778 |
| 58 | 58 | 0.536 |
| 59 | 59 | 0.0245 |
| 6 | 6 | 0.737 |
| 60 | 60 | 0.281 |
| 61 | 61 | 0.539 |
| 62 | 62 | 0.115 |
| 63 | 63 | 0.558 |
| 64 | 64 | 0.882 |
| 65 | 65 | 0.0834 |
| 66 | 66 | 2.28466e-5 |
| 67 | 67 | 0.672 |
| 68 | 68 | 0.3 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.823 |
| 70 | 70 | 0.0534 |
| 71 | 71 | 0.635 |
| 72 | 72 | 0.325 |
| 73 | 73 | 0.284 |
| 74 | 74 | 0.0947 |
| 75 | 75 | 0.877 |
| 76 | 76 | 0.849 |
| 77 | 77 | 0.0611 |
| 78 | 78 | 0.449 |
| 79 | 79 | 0.0231 |
| 8 | 8 | 0.41 |
| 80 | 80 | 0.0432 |
| 81 | 81 | 0.126 |
| 82 | 82 | 0.00214 |
| 83 | 83 | 0.189 |
| 84 | 84 | 0.844 |
| 85 | 85 | 0.00345 |
| 86 | 86 | 0.274 |
| 87 | 87 | 0.187 |
| 88 | 88 | 0.943 |
| 89 | 89 | 0.0751 |
| 9 | 9 | 0.015 |
| 90 | 90 | 0.308 |
| 91 | 91 | 0.0252 |
| 92 | 92 | 0.0236 |
| 93 | 93 | 0.712 |
| 94 | 94 | 0.0514 |
| 95 | 95 | 0.607 |
| 96 | 96 | 0.132 |
| 97 | 97 | 0.741 |
| 98 | 98 | 0.569 |
| 99 | 99 | 0.551 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11287
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102211 oral squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
