FF:11239-116D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004783 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004783 | ||
|accession_numbers=CAGE;DRX008483;DRR009355;DRZ000780;DRZ002165;DRZ012130;DRZ013515 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037218;DRR041584;DRZ007226 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000180,FF:0000181 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor1.CNhs10868.11239-116D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11239-116D6 | |id=FF:11239-116D6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000181 | ||
|is_obsolete= | |||
|library_id=CNhs10868 | |||
|library_id_phase_based=2:CNhs10868 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11239 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.GTAGAG.11239 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11239 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.GTAGAG.11239 | |||
|name=Smooth Muscle Cells - Colonic, donor1 | |name=Smooth Muscle Cells - Colonic, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10868,LSID702,release008,COMPLETED | |profile_hcage=CNhs10868,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC2945 | |rna_catalog_number=SC2945 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D6 | |rna_tube_id=116D6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.GTAGAG | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.49921808897884e-233!GO:0005737;cytoplasm;1.51476357733945e-203!GO:0043226;organelle;3.79602837734601e-179!GO:0043229;intracellular organelle;7.44870182031608e-179!GO:0043231;intracellular membrane-bound organelle;5.79190276560538e-178!GO:0043227;membrane-bound organelle;1.22940572133058e-177!GO:0044444;cytoplasmic part;4.08543997722241e-151!GO:0044422;organelle part;2.31742596855634e-143!GO:0044446;intracellular organelle part;7.92363229934242e-142!GO:0032991;macromolecular complex;1.11916802291001e-96!GO:0030529;ribonucleoprotein complex;1.43097993521549e-85!GO:0044238;primary metabolic process;9.04647374697207e-85!GO:0044237;cellular metabolic process;1.54824974172476e-84!GO:0043170;macromolecule metabolic process;3.01432311491231e-73!GO:0005739;mitochondrion;1.11752698902305e-72!GO:0005515;protein binding;9.35918861471166e-72!GO:0043233;organelle lumen;5.98583275926938e-70!GO:0031974;membrane-enclosed lumen;5.98583275926938e-70!GO:0044428;nuclear part;2.9170448579446e-65!GO:0003723;RNA binding;6.95795456237211e-65!GO:0005634;nucleus;3.54615785644437e-58!GO:0031090;organelle membrane;2.35234499507008e-55!GO:0005840;ribosome;6.01460916260753e-54!GO:0019538;protein metabolic process;2.98874226175354e-51!GO:0006412;translation;1.48223385630393e-49!GO:0043234;protein complex;1.73958587701032e-48!GO:0016043;cellular component organization and biogenesis;2.48185298144694e-48!GO:0044429;mitochondrial part;2.48185298144694e-48!GO:0003735;structural constituent of ribosome;1.12856323741428e-47!GO:0009058;biosynthetic process;6.44519258410441e-47!GO:0044260;cellular macromolecule metabolic process;4.77017158227052e-46!GO:0044267;cellular protein metabolic process;6.45200669433402e-45!GO:0006396;RNA processing;7.92099691083148e-44!GO:0031967;organelle envelope;1.33460561763953e-43!GO:0015031;protein transport;2.42489131096087e-43!GO:0031975;envelope;2.69216597676651e-43!GO:0033036;macromolecule localization;6.74831362240336e-43!GO:0044249;cellular biosynthetic process;1.58290600463292e-41!GO:0033279;ribosomal subunit;2.73580265817354e-41!GO:0005829;cytosol;5.30774310919081e-40!GO:0008104;protein localization;1.04809796405526e-39!GO:0045184;establishment of protein localization;1.09908000353422e-39!GO:0009059;macromolecule biosynthetic process;1.60464199564161e-39!GO:0031981;nuclear lumen;2.23138887574719e-38!GO:0043283;biopolymer metabolic process;2.93272326867158e-35!GO:0046907;intracellular transport;3.84893693452461e-35!GO:0016071;mRNA metabolic process;4.87549434109143e-35!GO:0008380;RNA splicing;5.600718161119e-33!GO:0065003;macromolecular complex assembly;5.69710059704702e-32!GO:0010467;gene expression;6.20684442898546e-32!GO:0005740;mitochondrial envelope;2.41190130099805e-31!GO:0006397;mRNA processing;1.05812992111905e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.25088004586505e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.11023826123455e-30!GO:0031966;mitochondrial membrane;1.12324187047066e-29!GO:0043228;non-membrane-bound organelle;1.69475906353495e-29!GO:0043232;intracellular non-membrane-bound organelle;1.69475906353495e-29!GO:0006996;organelle organization and biogenesis;2.40865349095675e-29!GO:0019866;organelle inner membrane;3.88225550276896e-29!GO:0006886;intracellular protein transport;4.24345567219174e-29!GO:0022607;cellular component assembly;1.33867459112787e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.32638344984809e-28!GO:0005743;mitochondrial inner membrane;1.69330020871888e-27!GO:0044445;cytosolic part;4.25084939818177e-24!GO:0012505;endomembrane system;6.5818123534809e-24!GO:0006119;oxidative phosphorylation;1.10657415226927e-23!GO:0005783;endoplasmic reticulum;1.88676483579925e-23!GO:0005654;nucleoplasm;2.24903002536741e-23!GO:0005681;spliceosome;4.79980933320983e-23!GO:0051649;establishment of cellular localization;4.33402770725563e-22!GO:0006259;DNA metabolic process;4.33478558152985e-22!GO:0051641;cellular localization;4.45318343834914e-22!GO:0015935;small ribosomal subunit;1.40693609950813e-21!GO:0006457;protein folding;1.61609723781237e-21!GO:0044455;mitochondrial membrane part;2.55010359247118e-21!GO:0015934;large ribosomal subunit;8.88957137571973e-21!GO:0031980;mitochondrial lumen;2.3181543142571e-20!GO:0005759;mitochondrial matrix;2.3181543142571e-20!GO:0000166;nucleotide binding;2.45813814041371e-20!GO:0048770;pigment granule;5.1002430654233e-20!GO:0042470;melanosome;5.1002430654233e-20!GO:0007049;cell cycle;1.13710380422335e-18!GO:0044451;nucleoplasm part;1.1544087721989e-18!GO:0044432;endoplasmic reticulum part;1.34093933640878e-18!GO:0016462;pyrophosphatase activity;2.62896389886602e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.76924671122971e-18!GO:0005746;mitochondrial respiratory chain;3.69400150265001e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;4.1727641718095e-18!GO:0022618;protein-RNA complex assembly;6.12977778256125e-18!GO:0005794;Golgi apparatus;1.75823247436589e-17!GO:0017111;nucleoside-triphosphatase activity;2.01322672745215e-17!GO:0051186;cofactor metabolic process;2.15684174939169e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.97824851649651e-17!GO:0016874;ligase activity;3.21039446146413e-17!GO:0043285;biopolymer catabolic process;1.44946904307852e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.12329155703484e-16!GO:0044265;cellular macromolecule catabolic process;3.52298732671759e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.98620817663963e-16!GO:0019941;modification-dependent protein catabolic process;4.42153144896059e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.42153144896059e-16!GO:0044257;cellular protein catabolic process;6.37340452258441e-16!GO:0005761;mitochondrial ribosome;7.58696246237943e-16!GO:0000313;organellar ribosome;7.58696246237943e-16!GO:0006511;ubiquitin-dependent protein catabolic process;8.41072804016443e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.81145911605079e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.01081693909841e-16!GO:0003954;NADH dehydrogenase activity;9.01081693909841e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.01081693909841e-16!GO:0006512;ubiquitin cycle;1.20696105533768e-15!GO:0030163;protein catabolic process;1.89447872344567e-15!GO:0044248;cellular catabolic process;2.01263049908664e-15!GO:0005730;nucleolus;2.12136778292917e-15!GO:0009057;macromolecule catabolic process;2.2136815426691e-15!GO:0008135;translation factor activity, nucleic acid binding;3.40286462842747e-15!GO:0003676;nucleic acid binding;3.58053787668911e-15!GO:0048193;Golgi vesicle transport;3.59437484579829e-15!GO:0006974;response to DNA damage stimulus;9.44489144429456e-15!GO:0006605;protein targeting;1.39022016608912e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.99760253062283e-14!GO:0032553;ribonucleotide binding;1.99760253062283e-14!GO:0032555;purine ribonucleotide binding;1.99760253062283e-14!GO:0051082;unfolded protein binding;2.37478308004283e-14!GO:0017076;purine nucleotide binding;2.60419566545256e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.85911250626378e-14!GO:0022402;cell cycle process;4.98529758176481e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.06833690993056e-14!GO:0042773;ATP synthesis coupled electron transport;5.06833690993056e-14!GO:0006732;coenzyme metabolic process;6.56188327524002e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.56188327524002e-14!GO:0045271;respiratory chain complex I;6.56188327524002e-14!GO:0005747;mitochondrial respiratory chain complex I;6.56188327524002e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.00513740548246e-13!GO:0008134;transcription factor binding;2.74581366665463e-13!GO:0000278;mitotic cell cycle;2.74581366665463e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.55178992042253e-13!GO:0016192;vesicle-mediated transport;4.44618554865265e-13!GO:0005635;nuclear envelope;4.67051919868223e-13!GO:0005789;endoplasmic reticulum membrane;1.27659416271951e-12!GO:0009055;electron carrier activity;1.73300040625681e-12!GO:0003743;translation initiation factor activity;1.95330994334904e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.00726779742968e-12!GO:0000375;RNA splicing, via transesterification reactions;3.00726779742968e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.00726779742968e-12!GO:0005793;ER-Golgi intermediate compartment;6.43237428384556e-12!GO:0005524;ATP binding;7.25317201271687e-12!GO:0032559;adenyl ribonucleotide binding;7.56152095275742e-12!GO:0009259;ribonucleotide metabolic process;9.42293041298522e-12!GO:0030554;adenyl nucleotide binding;1.37459862925506e-11!GO:0006413;translational initiation;1.68143784945799e-11!GO:0031965;nuclear membrane;1.82864521139727e-11!GO:0043412;biopolymer modification;2.54961047956575e-11!GO:0006281;DNA repair;2.77576361078669e-11!GO:0016070;RNA metabolic process;2.9274101124277e-11!GO:0009719;response to endogenous stimulus;3.64601172916065e-11!GO:0042254;ribosome biogenesis and assembly;4.12668486569713e-11!GO:0006163;purine nucleotide metabolic process;4.64867275441643e-11!GO:0009150;purine ribonucleotide metabolic process;8.40245145955397e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.45050161939188e-10!GO:0006446;regulation of translational initiation;1.78693279354443e-10!GO:0009260;ribonucleotide biosynthetic process;2.12198545180996e-10!GO:0006464;protein modification process;2.51933192284896e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.57147819639267e-10!GO:0016604;nuclear body;2.57320556572082e-10!GO:0006164;purine nucleotide biosynthetic process;2.69645427046281e-10!GO:0008565;protein transporter activity;3.47567560341363e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.6958348658079e-10!GO:0044453;nuclear membrane part;4.81160868261948e-10!GO:0005694;chromosome;5.59601622666856e-10!GO:0009199;ribonucleoside triphosphate metabolic process;6.14057008084229e-10!GO:0012501;programmed cell death;7.00997955792219e-10!GO:0009141;nucleoside triphosphate metabolic process;7.40407918755188e-10!GO:0016491;oxidoreductase activity;7.46956480846335e-10!GO:0006913;nucleocytoplasmic transport;7.62990452500164e-10!GO:0009056;catabolic process;8.43425203249124e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.03853265265957e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.03853265265957e-09!GO:0000087;M phase of mitotic cell cycle;1.19860182595205e-09!GO:0006915;apoptosis;1.19860182595205e-09!GO:0008639;small protein conjugating enzyme activity;1.31959460041296e-09!GO:0042623;ATPase activity, coupled;1.62643267173344e-09!GO:0051169;nuclear transport;1.78068119588301e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.78255964082495e-09!GO:0009060;aerobic respiration;1.80047086500869e-09!GO:0006461;protein complex assembly;1.80047086500869e-09!GO:0007067;mitosis;1.94899946548341e-09!GO:0019787;small conjugating protein ligase activity;2.23386079722526e-09!GO:0004842;ubiquitin-protein ligase activity;2.2887459315825e-09!GO:0051301;cell division;2.69794943089356e-09!GO:0006399;tRNA metabolic process;3.41491260903372e-09!GO:0000074;regulation of progression through cell cycle;3.41491260903372e-09!GO:0051726;regulation of cell cycle;3.73884481507774e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.7585700630745e-09!GO:0009117;nucleotide metabolic process;3.85222281934577e-09!GO:0045333;cellular respiration;4.08678000385506e-09!GO:0044427;chromosomal part;4.57848107622378e-09!GO:0016887;ATPase activity;4.6928604770627e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.06496916247539e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.06496916247539e-09!GO:0051276;chromosome organization and biogenesis;5.0842411965733e-09!GO:0008219;cell death;5.49935366104187e-09!GO:0016265;death;5.49935366104187e-09!GO:0004386;helicase activity;5.61648901079257e-09!GO:0015986;ATP synthesis coupled proton transport;5.90621300372003e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.90621300372003e-09!GO:0022403;cell cycle phase;6.42407972480886e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.50533862720664e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.50533862720664e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.6062311236306e-09!GO:0043687;post-translational protein modification;1.00438780017635e-08!GO:0003712;transcription cofactor activity;1.14915596771408e-08!GO:0005788;endoplasmic reticulum lumen;1.41873247890089e-08!GO:0051188;cofactor biosynthetic process;1.46324373008177e-08!GO:0016607;nuclear speck;1.58823975429467e-08!GO:0016881;acid-amino acid ligase activity;1.88787628761751e-08!GO:0046034;ATP metabolic process;1.971676837e-08!GO:0065004;protein-DNA complex assembly;2.09229551810519e-08!GO:0006260;DNA replication;2.12428646336537e-08!GO:0019829;cation-transporting ATPase activity;2.66293209322012e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.2910302210133e-08!GO:0017038;protein import;3.38403800839564e-08!GO:0065002;intracellular protein transport across a membrane;3.67650361795717e-08!GO:0008026;ATP-dependent helicase activity;3.71673990869288e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.96940510817532e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.02691183754144e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.02691183754144e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.02691183754144e-08!GO:0005768;endosome;4.05636928298238e-08!GO:0006099;tricarboxylic acid cycle;4.59956797497151e-08!GO:0046356;acetyl-CoA catabolic process;4.59956797497151e-08!GO:0048523;negative regulation of cellular process;4.69874725553311e-08!GO:0043038;amino acid activation;6.12152526702225e-08!GO:0006418;tRNA aminoacylation for protein translation;6.12152526702225e-08!GO:0043039;tRNA aminoacylation;6.12152526702225e-08!GO:0030120;vesicle coat;7.09744025434099e-08!GO:0030662;coated vesicle membrane;7.09744025434099e-08!GO:0005643;nuclear pore;1.1009837380909e-07!GO:0006323;DNA packaging;1.14719597980659e-07!GO:0051187;cofactor catabolic process;1.30137728404434e-07!GO:0007005;mitochondrion organization and biogenesis;1.355824338081e-07!GO:0044431;Golgi apparatus part;1.40001156432151e-07!GO:0006754;ATP biosynthetic process;1.5323365252373e-07!GO:0006753;nucleoside phosphate metabolic process;1.5323365252373e-07!GO:0048475;coated membrane;1.65783588580222e-07!GO:0030117;membrane coat;1.65783588580222e-07!GO:0009109;coenzyme catabolic process;1.72228155138666e-07!GO:0006084;acetyl-CoA metabolic process;1.76381331822348e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.8841029628949e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.90865476025023e-07!GO:0051246;regulation of protein metabolic process;3.55683843663111e-07!GO:0006364;rRNA processing;3.8000638214774e-07!GO:0009108;coenzyme biosynthetic process;4.50325543630913e-07!GO:0016853;isomerase activity;4.70548809186764e-07!GO:0006091;generation of precursor metabolites and energy;4.7822814573695e-07!GO:0015630;microtubule cytoskeleton;5.41320476085613e-07!GO:0003924;GTPase activity;5.41320476085613e-07!GO:0000279;M phase;5.74987044934746e-07!GO:0006333;chromatin assembly or disassembly;8.04089948220157e-07!GO:0046930;pore complex;8.34328174659608e-07!GO:0050657;nucleic acid transport;8.48313098317153e-07!GO:0051236;establishment of RNA localization;8.48313098317153e-07!GO:0050658;RNA transport;8.48313098317153e-07!GO:0016072;rRNA metabolic process;8.67427863118226e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.80137252612531e-07!GO:0006403;RNA localization;8.80151055939606e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04384570041716e-06!GO:0048519;negative regulation of biological process;1.29979907107551e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.39776425823624e-06!GO:0031252;leading edge;1.67018529850682e-06!GO:0016859;cis-trans isomerase activity;1.70279459741006e-06!GO:0016740;transferase activity;1.7342399418011e-06!GO:0043069;negative regulation of programmed cell death;1.75955788854951e-06!GO:0000785;chromatin;1.75955788854951e-06!GO:0031988;membrane-bound vesicle;1.80025893042987e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.9007866441587e-06!GO:0005798;Golgi-associated vesicle;1.95745579717418e-06!GO:0003697;single-stranded DNA binding;2.02833262360699e-06!GO:0006366;transcription from RNA polymerase II promoter;2.45202857981581e-06!GO:0042981;regulation of apoptosis;2.47175958538051e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.51709396714369e-06!GO:0045259;proton-transporting ATP synthase complex;2.73763668131307e-06!GO:0043067;regulation of programmed cell death;2.84983976862914e-06!GO:0043066;negative regulation of apoptosis;2.87664217830134e-06!GO:0005770;late endosome;2.9662578419748e-06!GO:0005773;vacuole;2.96793402066617e-06!GO:0006752;group transfer coenzyme metabolic process;3.05524549838038e-06!GO:0016787;hydrolase activity;3.05524549838038e-06!GO:0032446;protein modification by small protein conjugation;3.22557784138943e-06!GO:0016567;protein ubiquitination;4.35399361267844e-06!GO:0008654;phospholipid biosynthetic process;4.50083426432864e-06!GO:0004298;threonine endopeptidase activity;4.5160732670507e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.81941501002138e-06!GO:0005762;mitochondrial large ribosomal subunit;5.08157392831025e-06!GO:0000315;organellar large ribosomal subunit;5.08157392831025e-06!GO:0006613;cotranslational protein targeting to membrane;5.42094906083025e-06!GO:0043566;structure-specific DNA binding;5.53896910083347e-06!GO:0031982;vesicle;5.55988038672103e-06!GO:0000245;spliceosome assembly;5.62287874618883e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.62538636660315e-06!GO:0000139;Golgi membrane;5.62538636660315e-06!GO:0051170;nuclear import;5.67116621680178e-06!GO:0006334;nucleosome assembly;5.67116621680178e-06!GO:0031410;cytoplasmic vesicle;6.21473814291235e-06!GO:0016126;sterol biosynthetic process;6.21473814291235e-06!GO:0050794;regulation of cellular process;6.99994426598102e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.6516564912707e-06!GO:0000151;ubiquitin ligase complex;8.6878033868145e-06!GO:0005813;centrosome;9.84605006139104e-06!GO:0044440;endosomal part;1.04990140309214e-05!GO:0010008;endosome membrane;1.04990140309214e-05!GO:0006916;anti-apoptosis;1.13864513052512e-05!GO:0016779;nucleotidyltransferase activity;1.20159785067137e-05!GO:0006606;protein import into nucleus;1.37284207716144e-05!GO:0005791;rough endoplasmic reticulum;1.42624100628408e-05!GO:0045454;cell redox homeostasis;1.51781175156182e-05!GO:0030133;transport vesicle;1.70426669813531e-05!GO:0016310;phosphorylation;1.80285793575801e-05!GO:0000323;lytic vacuole;1.87503208862225e-05!GO:0005764;lysosome;1.87503208862225e-05!GO:0006793;phosphorus metabolic process;1.87503208862225e-05!GO:0006796;phosphate metabolic process;1.87503208862225e-05!GO:0031497;chromatin assembly;2.0193921598e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.1105502360018e-05!GO:0003724;RNA helicase activity;2.48177840262157e-05!GO:0043623;cellular protein complex assembly;2.62702239103851e-05!GO:0051028;mRNA transport;2.67312221486249e-05!GO:0008610;lipid biosynthetic process;2.76188164236061e-05!GO:0031968;organelle outer membrane;2.79702973145077e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.9406080083322e-05!GO:0005815;microtubule organizing center;3.01641228431396e-05!GO:0045786;negative regulation of progression through cell cycle;3.0368167719451e-05!GO:0030867;rough endoplasmic reticulum membrane;3.5016239862079e-05!GO:0005667;transcription factor complex;3.56606841441866e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.66420511231206e-05!GO:0009165;nucleotide biosynthetic process;3.66420511231206e-05!GO:0051789;response to protein stimulus;3.97749820096204e-05!GO:0006986;response to unfolded protein;3.97749820096204e-05!GO:0019867;outer membrane;4.68885687880479e-05!GO:0008361;regulation of cell size;4.7902218437083e-05!GO:0019843;rRNA binding;5.21948461464822e-05!GO:0005769;early endosome;5.21948461464822e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;6.35921889820626e-05!GO:0000314;organellar small ribosomal subunit;7.03258430740793e-05!GO:0005763;mitochondrial small ribosomal subunit;7.03258430740793e-05!GO:0005525;GTP binding;7.07599342401638e-05!GO:0043021;ribonucleoprotein binding;7.8547182178004e-05!GO:0016049;cell growth;8.94995765835087e-05!GO:0051427;hormone receptor binding;9.22104245601976e-05!GO:0006695;cholesterol biosynthetic process;0.000102958515575922!GO:0003714;transcription corepressor activity;0.000117547586001379!GO:0006612;protein targeting to membrane;0.000133985056729718!GO:0050789;regulation of biological process;0.000165501508252053!GO:0007010;cytoskeleton organization and biogenesis;0.000172184888081098!GO:0016568;chromatin modification;0.000178122998065774!GO:0005819;spindle;0.000178532534474017!GO:0005741;mitochondrial outer membrane;0.000182047086945691!GO:0051329;interphase of mitotic cell cycle;0.000182470208067794!GO:0031324;negative regulation of cellular metabolic process;0.000190152977815459!GO:0035257;nuclear hormone receptor binding;0.000190595484460408!GO:0030036;actin cytoskeleton organization and biogenesis;0.000191117973072251!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000206853985212443!GO:0005905;coated pit;0.000220261356743354!GO:0003713;transcription coactivator activity;0.000223475910646405!GO:0033116;ER-Golgi intermediate compartment membrane;0.000248657533617557!GO:0005048;signal sequence binding;0.000259389317916195!GO:0001558;regulation of cell growth;0.000272994774108655!GO:0032561;guanyl ribonucleotide binding;0.000291193144262389!GO:0019001;guanyl nucleotide binding;0.000291193144262389!GO:0004576;oligosaccharyl transferase activity;0.000311420464187435!GO:0030663;COPI coated vesicle membrane;0.000329627824988077!GO:0030126;COPI vesicle coat;0.000329627824988077!GO:0008250;oligosaccharyl transferase complex;0.000335600310882721!GO:0005885;Arp2/3 protein complex;0.00033611360662881!GO:0019899;enzyme binding;0.000382502229283873!GO:0046474;glycerophospholipid biosynthetic process;0.000383871777921192!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000425742329191761!GO:0016564;transcription repressor activity;0.000461475791307665!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000474081250932768!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000494399165058007!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00050275240946482!GO:0003899;DNA-directed RNA polymerase activity;0.000539721067608377!GO:0008186;RNA-dependent ATPase activity;0.000591845936770395!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000591845936770395!GO:0006261;DNA-dependent DNA replication;0.000631582129873656!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000687389665791144!GO:0051325;interphase;0.000705481959317065!GO:0006891;intra-Golgi vesicle-mediated transport;0.000737591627063002!GO:0051920;peroxiredoxin activity;0.000742207269137183!GO:0043681;protein import into mitochondrion;0.000764445982894495!GO:0006626;protein targeting to mitochondrion;0.000786065569868718!GO:0044262;cellular carbohydrate metabolic process;0.000813218425346487!GO:0016363;nuclear matrix;0.000860116334670577!GO:0030029;actin filament-based process;0.000887739430512416!GO:0007243;protein kinase cascade;0.000932160170610956!GO:0018196;peptidyl-asparagine modification;0.000942197925158541!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000942197925158541!GO:0006839;mitochondrial transport;0.000957765008831074!GO:0007051;spindle organization and biogenesis;0.0010054843395858!GO:0046467;membrane lipid biosynthetic process;0.0010203498585217!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102389390340095!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102389390340095!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102389390340095!GO:0009892;negative regulation of metabolic process;0.00103978582315019!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00107696588542969!GO:0016563;transcription activator activity;0.00119851074418496!GO:0030137;COPI-coated vesicle;0.00123233307240109!GO:0001726;ruffle;0.00123477998614194!GO:0042802;identical protein binding;0.00132169288692304!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00133002922074418!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00137409273750058!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00145914501823345!GO:0030027;lamellipodium;0.00155108261040592!GO:0004004;ATP-dependent RNA helicase activity;0.00161008817791706!GO:0006979;response to oxidative stress;0.00169220434524206!GO:0048500;signal recognition particle;0.00170008665658571!GO:0015992;proton transport;0.00181431637457936!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00185537721061327!GO:0015002;heme-copper terminal oxidase activity;0.00185537721061327!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00185537721061327!GO:0004129;cytochrome-c oxidase activity;0.00185537721061327!GO:0019752;carboxylic acid metabolic process;0.00192013533110679!GO:0006950;response to stress;0.00194325044689896!GO:0051168;nuclear export;0.00195730166607126!GO:0006818;hydrogen transport;0.00206976378864544!GO:0006082;organic acid metabolic process;0.00207460055917521!GO:0000075;cell cycle checkpoint;0.00225085705060872!GO:0046489;phosphoinositide biosynthetic process;0.00228407476426887!GO:0031072;heat shock protein binding;0.00228667369925178!GO:0016125;sterol metabolic process;0.00230284374700567!GO:0008092;cytoskeletal protein binding;0.00261582907983279!GO:0003690;double-stranded DNA binding;0.00261776830959141!GO:0008047;enzyme activator activity;0.0028224014293002!GO:0046483;heterocycle metabolic process;0.00283238793175945!GO:0016044;membrane organization and biogenesis;0.00293830245852799!GO:0009112;nucleobase metabolic process;0.00295561817842772!GO:0000775;chromosome, pericentric region;0.0030260081525153!GO:0048522;positive regulation of cellular process;0.0030260081525153!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0030260081525153!GO:0015399;primary active transmembrane transporter activity;0.0030260081525153!GO:0004177;aminopeptidase activity;0.0030260081525153!GO:0048471;perinuclear region of cytoplasm;0.00308604279779436!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00311514441053536!GO:0051252;regulation of RNA metabolic process;0.00312597398064075!GO:0007006;mitochondrial membrane organization and biogenesis;0.00314536094685672!GO:0051052;regulation of DNA metabolic process;0.00322493346500428!GO:0030658;transport vesicle membrane;0.0032487907730328!GO:0030176;integral to endoplasmic reticulum membrane;0.00326648095247907!GO:0006414;translational elongation;0.00327591275281263!GO:0000059;protein import into nucleus, docking;0.00338681210180225!GO:0003684;damaged DNA binding;0.00344711913359134!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00353475860769252!GO:0045047;protein targeting to ER;0.00353475860769252!GO:0022890;inorganic cation transmembrane transporter activity;0.00358802885759651!GO:0008180;signalosome;0.00366965693923626!GO:0006383;transcription from RNA polymerase III promoter;0.00369777506926934!GO:0030659;cytoplasmic vesicle membrane;0.00370065587492948!GO:0050662;coenzyme binding;0.00377687352415942!GO:0043284;biopolymer biosynthetic process;0.0038205277335727!GO:0030134;ER to Golgi transport vesicle;0.00383703761812697!GO:0006302;double-strand break repair;0.00404625785782878!GO:0016481;negative regulation of transcription;0.00418284135861101!GO:0008312;7S RNA binding;0.00433858216775257!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00441338141316043!GO:0035258;steroid hormone receptor binding;0.00443760634310278!GO:0031902;late endosome membrane;0.00452334081078058!GO:0003729;mRNA binding;0.00468478744774193!GO:0005581;collagen;0.00469645390506631!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00473600441644069!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00482687218722848!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00482687218722848!GO:0043488;regulation of mRNA stability;0.00485698515399956!GO:0043487;regulation of RNA stability;0.00485698515399956!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00514018389609597!GO:0051287;NAD binding;0.00514587173208403!GO:0008139;nuclear localization sequence binding;0.00534676503863085!GO:0000776;kinetochore;0.00570508740481715!GO:0005869;dynactin complex;0.00593442184665159!GO:0030118;clathrin coat;0.00593500737921637!GO:0065009;regulation of a molecular function;0.00593704478865278!GO:0000786;nucleosome;0.00593704478865278!GO:0016408;C-acyltransferase activity;0.00596426559104524!GO:0030132;clathrin coat of coated pit;0.00607437433009326!GO:0030127;COPII vesicle coat;0.0060994582263861!GO:0012507;ER to Golgi transport vesicle membrane;0.0060994582263861!GO:0008632;apoptotic program;0.00614389307400097!GO:0030880;RNA polymerase complex;0.00617655575253684!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00624178876052101!GO:0048487;beta-tubulin binding;0.00630610657338882!GO:0030521;androgen receptor signaling pathway;0.00633642511096197!GO:0003678;DNA helicase activity;0.00641021791166978!GO:0005684;U2-dependent spliceosome;0.00646632120781225!GO:0008033;tRNA processing;0.00677895573693821!GO:0006310;DNA recombination;0.00677895573693821!GO:0006352;transcription initiation;0.00677895573693821!GO:0044452;nucleolar part;0.00685426189188296!GO:0044433;cytoplasmic vesicle part;0.00685658589977211!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00688612725268026!GO:0051087;chaperone binding;0.00688612725268026!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00692411139349734!GO:0016251;general RNA polymerase II transcription factor activity;0.00701131938579885!GO:0006118;electron transport;0.00763645386332796!GO:0015631;tubulin binding;0.00764988216891764!GO:0008094;DNA-dependent ATPase activity;0.00786755379360902!GO:0006520;amino acid metabolic process;0.00816682591989394!GO:0009116;nucleoside metabolic process;0.00861653065102584!GO:0031124;mRNA 3'-end processing;0.00871830813003699!GO:0040008;regulation of growth;0.00871830813003699!GO:0016272;prefoldin complex;0.00873705911373911!GO:0007050;cell cycle arrest;0.00882326675690974!GO:0005657;replication fork;0.00889879488624531!GO:0000082;G1/S transition of mitotic cell cycle;0.00906724335543547!GO:0030660;Golgi-associated vesicle membrane;0.0093462883451036!GO:0005096;GTPase activator activity;0.0093486175401354!GO:0012506;vesicle membrane;0.00943474481898275!GO:0016197;endosome transport;0.0096527099254664!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0100522297595915!GO:0005586;collagen type III;0.0100757365364881!GO:0045045;secretory pathway;0.0101900150462235!GO:0006650;glycerophospholipid metabolic process;0.0103588923186769!GO:0000339;RNA cap binding;0.0105803324633183!GO:0019798;procollagen-proline dioxygenase activity;0.0106441700012482!GO:0006220;pyrimidine nucleotide metabolic process;0.0109180736492851!GO:0006402;mRNA catabolic process;0.0110470804403461!GO:0005862;muscle thin filament tropomyosin;0.0111031173902483!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0111479301599409!GO:0006595;polyamine metabolic process;0.0114087785239028!GO:0005774;vacuolar membrane;0.011649806165031!GO:0031543;peptidyl-proline dioxygenase activity;0.0119170103540711!GO:0051128;regulation of cellular component organization and biogenesis;0.0121138067031621!GO:0051539;4 iron, 4 sulfur cluster binding;0.0121138067031621!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0127169316232973!GO:0000428;DNA-directed RNA polymerase complex;0.0127169316232973!GO:0005874;microtubule;0.0127173568079911!GO:0017166;vinculin binding;0.0127246888668767!GO:0006740;NADPH regeneration;0.012976734822593!GO:0006098;pentose-phosphate shunt;0.012976734822593!GO:0009967;positive regulation of signal transduction;0.0131057395927156!GO:0006509;membrane protein ectodomain proteolysis;0.0131930429589766!GO:0033619;membrane protein proteolysis;0.0131930429589766!GO:0043022;ribosome binding;0.0136055463202995!GO:0016860;intramolecular oxidoreductase activity;0.0138303292404371!GO:0008320;protein transmembrane transporter activity;0.013869356927111!GO:0031625;ubiquitin protein ligase binding;0.0139831478644278!GO:0016584;nucleosome positioning;0.0140605638093432!GO:0050811;GABA receptor binding;0.014604892882418!GO:0005637;nuclear inner membrane;0.0147860418239003!GO:0006892;post-Golgi vesicle-mediated transport;0.0147963556165131!GO:0007040;lysosome organization and biogenesis;0.0148467640773232!GO:0031418;L-ascorbic acid binding;0.0149557421665318!GO:0004674;protein serine/threonine kinase activity;0.0151166871195906!GO:0005832;chaperonin-containing T-complex;0.015458584932983!GO:0045792;negative regulation of cell size;0.0155044882458232!GO:0051540;metal cluster binding;0.015789833281695!GO:0051536;iron-sulfur cluster binding;0.015789833281695!GO:0003746;translation elongation factor activity;0.0158440828180333!GO:0006643;membrane lipid metabolic process;0.0159889889104072!GO:0032984;macromolecular complex disassembly;0.0160084355749291!GO:0004364;glutathione transferase activity;0.0162492219356375!GO:0006066;alcohol metabolic process;0.0163973462735793!GO:0007264;small GTPase mediated signal transduction;0.0164753627966974!GO:0065007;biological regulation;0.0165949813314453!GO:0000209;protein polyubiquitination;0.0168448416579776!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0168508178332432!GO:0007034;vacuolar transport;0.0170695861925876!GO:0006289;nucleotide-excision repair;0.017648188524958!GO:0007052;mitotic spindle organization and biogenesis;0.0178512626716595!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0179532627492404!GO:0006720;isoprenoid metabolic process;0.0179532627492404!GO:0006497;protein amino acid lipidation;0.0179532627492404!GO:0006144;purine base metabolic process;0.0179532627492404!GO:0031901;early endosome membrane;0.0185559956474511!GO:0030145;manganese ion binding;0.0185798951954544!GO:0044255;cellular lipid metabolic process;0.0188159346961938!GO:0008168;methyltransferase activity;0.0195891608003771!GO:0030041;actin filament polymerization;0.0196143124077939!GO:0042158;lipoprotein biosynthetic process;0.0196143124077939!GO:0050681;androgen receptor binding;0.0198193944103394!GO:0003711;transcription elongation regulator activity;0.0202949309393781!GO:0030308;negative regulation of cell growth;0.0203885379404745!GO:0016741;transferase activity, transferring one-carbon groups;0.0204250994302113!GO:0031529;ruffle organization and biogenesis;0.0205017898727915!GO:0006672;ceramide metabolic process;0.0208793232607436!GO:0033559;unsaturated fatty acid metabolic process;0.0215453309702629!GO:0006636;unsaturated fatty acid biosynthetic process;0.0215453309702629!GO:0019222;regulation of metabolic process;0.0222908606992168!GO:0007021;tubulin folding;0.0224320025728818!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0227119985509501!GO:0005758;mitochondrial intermembrane space;0.0230874483175035!GO:0030518;steroid hormone receptor signaling pathway;0.0230874483175035!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0232471617653365!GO:0003756;protein disulfide isomerase activity;0.0235767198122538!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0235767198122538!GO:0043492;ATPase activity, coupled to movement of substances;0.0236683713442089!GO:0006007;glucose catabolic process;0.0241344128182014!GO:0000049;tRNA binding;0.0246008984710615!GO:0042770;DNA damage response, signal transduction;0.0246008984710615!GO:0046519;sphingoid metabolic process;0.0246008984710615!GO:0008234;cysteine-type peptidase activity;0.0247532889723693!GO:0006275;regulation of DNA replication;0.0248202456082171!GO:0008203;cholesterol metabolic process;0.0249749153101621!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025705263228139!GO:0000096;sulfur amino acid metabolic process;0.0260687984547409!GO:0030384;phosphoinositide metabolic process;0.0262648446712006!GO:0022406;membrane docking;0.0263115447561777!GO:0048278;vesicle docking;0.0263115447561777!GO:0031970;organelle envelope lumen;0.0267016580959357!GO:0030032;lamellipodium biogenesis;0.026717444401618!GO:0007093;mitotic cell cycle checkpoint;0.0269803768999452!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0270273359214846!GO:0008243;plasminogen activator activity;0.0270331063471469!GO:0044437;vacuolar part;0.0272954670392711!GO:0006733;oxidoreduction coenzyme metabolic process;0.0274699727629805!GO:0006611;protein export from nucleus;0.0277184828286039!GO:0048468;cell development;0.0277573909992288!GO:0006401;RNA catabolic process;0.0277713205938461!GO:0008299;isoprenoid biosynthetic process;0.0278452046931077!GO:0050750;low-density lipoprotein receptor binding;0.0284413358681759!GO:0031123;RNA 3'-end processing;0.028634781357767!GO:0007033;vacuole organization and biogenesis;0.028646954881537!GO:0006984;ER-nuclear signaling pathway;0.0288458873695169!GO:0030125;clathrin vesicle coat;0.0291381737904074!GO:0030665;clathrin coated vesicle membrane;0.0291381737904074!GO:0043241;protein complex disassembly;0.0294019824961325!GO:0051098;regulation of binding;0.0298556760254331!GO:0051101;regulation of DNA binding;0.0300998690385807!GO:0006778;porphyrin metabolic process;0.0301402651203775!GO:0033013;tetrapyrrole metabolic process;0.0301402651203775!GO:0030119;AP-type membrane coat adaptor complex;0.0302606849724219!GO:0006506;GPI anchor biosynthetic process;0.0305281830551125!GO:0007088;regulation of mitosis;0.0308216405879747!GO:0005669;transcription factor TFIID complex;0.0311713477921403!GO:0006769;nicotinamide metabolic process;0.0311713477921403!GO:0005765;lysosomal membrane;0.0314102245027621!GO:0008147;structural constituent of bone;0.0324175248045631!GO:0007030;Golgi organization and biogenesis;0.0324175248045631!GO:0008629;induction of apoptosis by intracellular signals;0.0326869151856888!GO:0048037;cofactor binding;0.0327076227419077!GO:0003682;chromatin binding;0.0328609887648988!GO:0008097;5S rRNA binding;0.0328609887648988!GO:0005099;Ras GTPase activator activity;0.0331301452475001!GO:0043624;cellular protein complex disassembly;0.0331301452475001!GO:0031371;ubiquitin conjugating enzyme complex;0.0332409509444123!GO:0019206;nucleoside kinase activity;0.0336959217990713!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.033988545639229!GO:0030833;regulation of actin filament polymerization;0.0345664809521507!GO:0008154;actin polymerization and/or depolymerization;0.0347001854469089!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0352355229175134!GO:0035035;histone acetyltransferase binding;0.0357096211711285!GO:0008286;insulin receptor signaling pathway;0.0358655469314861!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0358655469314861!GO:0000287;magnesium ion binding;0.0358857229936446!GO:0006505;GPI anchor metabolic process;0.0359252314912329!GO:0006739;NADP metabolic process;0.0360471921230333!GO:0009119;ribonucleoside metabolic process;0.0362076961900316!GO:0008637;apoptotic mitochondrial changes;0.0362551176373785!GO:0004003;ATP-dependent DNA helicase activity;0.0363419454577629!GO:0005100;Rho GTPase activator activity;0.0365061919069754!GO:0006790;sulfur metabolic process;0.0365152616217924!GO:0030508;thiol-disulfide exchange intermediate activity;0.0379631976622685!GO:0006904;vesicle docking during exocytosis;0.038246164328217!GO:0015036;disulfide oxidoreductase activity;0.0382513655548478!GO:0004448;isocitrate dehydrogenase activity;0.0387364164717912!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0387606660921266!GO:0010257;NADH dehydrogenase complex assembly;0.0387606660921266!GO:0033108;mitochondrial respiratory chain complex assembly;0.0387606660921266!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0398974591049796!GO:0033043;regulation of organelle organization and biogenesis;0.0398974591049796!GO:0048144;fibroblast proliferation;0.0399978897961126!GO:0048145;regulation of fibroblast proliferation;0.0399978897961126!GO:0006417;regulation of translation;0.0400648752969644!GO:0005801;cis-Golgi network;0.0404758082909136!GO:0008022;protein C-terminus binding;0.0405836849954787!GO:0005784;translocon complex;0.0407108754577765!GO:0008538;proteasome activator activity;0.0416608081396187!GO:0030911;TPR domain binding;0.0419501440741857!GO:0006749;glutathione metabolic process;0.0424718291762257!GO:0030496;midbody;0.0427046065411708!GO:0006405;RNA export from nucleus;0.0434873534082755!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0435257870207834!GO:0048518;positive regulation of biological process;0.0437040083360836!GO:0006644;phospholipid metabolic process;0.043756940773068!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0441041420607894!GO:0004563;beta-N-acetylhexosaminidase activity;0.0445555038293835!GO:0022884;macromolecule transmembrane transporter activity;0.0446533086730756!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0446533086730756!GO:0009081;branched chain family amino acid metabolic process;0.0446533086730756!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.044750749736583!GO:0043065;positive regulation of apoptosis;0.0447686048724682!GO:0030503;regulation of cell redox homeostasis;0.0449657920448878!GO:0006378;mRNA polyadenylation;0.0450845986315828!GO:0045892;negative regulation of transcription, DNA-dependent;0.045592838698473!GO:0004287;prolyl oligopeptidase activity;0.0457930682831065!GO:0030131;clathrin adaptor complex;0.0458182278196112!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0463203990533238!GO:0005583;fibrillar collagen;0.0468683001534365!GO:0005938;cell cortex;0.0469335774447243!GO:0003923;GPI-anchor transamidase activity;0.0469437748491244!GO:0016255;attachment of GPI anchor to protein;0.0469437748491244!GO:0042765;GPI-anchor transamidase complex;0.0469437748491244!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.047298062555608!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0485956300913854!GO:0007041;lysosomal transport;0.0490200716371939!GO:0004300;enoyl-CoA hydratase activity;0.0490848640919715!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0493277514754128!GO:0000303;response to superoxide;0.0498484935598162!GO:0006767;water-soluble vitamin metabolic process;0.0498506089898723!GO:0022411;cellular component disassembly;0.0499195441269042 | |||
|sample_id=11239 | |sample_id=11239 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=TAL1_TCF{3,4,12}:2.22023411058;NKX3-1:2.04014604399;DBP:1.89613249291;TEF:1.84797834922;MYBL2:1.58057941144;HSF1,2:1.33021168584;GZF1:1.32583978052;NKX2-2,8:1.32088948743;TFAP4:1.32023803386;ZNF238:1.29079941248;CDC5L:1.28502399675;GFI1B:1.20191781522;LHX3,4:1.15033307573;TEAD1:1.10716624134;NFIX:1.00781003868;AIRE:1.00590326794;NR3C1:1.00151367335;TBX4,5:0.998984611232;HMGA1,2:0.953341201981;POU3F1..4:0.879188147113;FOXL1:0.874976153128;SRF:0.868418917482;GFI1:0.852869680078;HAND1,2:0.782550783942;ALX4:0.770226105549;GTF2A1,2:0.73415379634;TLX1..3_NFIC{dimer}:0.711883467903;ATF6:0.705849434459;TP53:0.678530955657;PAX4:0.668526850404;HOX{A5,B5}:0.6551269546;SREBF1,2:0.645527747517;ESR1:0.643031092331;PAX1,9:0.622428055097;NKX2-1,4:0.621388009768;SOX17:0.618170992349;EBF1:0.611006998041;SPZ1:0.592034468586;YY1:0.579145139415;FOX{I1,J2}:0.578921697562;GCM1,2:0.540519956567;TBP:0.533017748157;UFEwm:0.531735140049;MZF1:0.51858414589;NFATC1..3:0.512805043197;HBP1_HMGB_SSRP1_UBTF:0.506966328457;HES1:0.493442117278;STAT5{A,B}:0.46058429699;GTF2I:0.439862844191;CDX1,2,4:0.42965172091;GLI1..3:0.425669987324;TFDP1:0.418112692915;ADNP_IRX_SIX_ZHX:0.411282052862;MAZ:0.391514040521;EN1,2:0.388332183554;NKX6-1,2:0.387785278247;FOXP1:0.385144522114;XBP1:0.337222574748;MAFB:0.311188994989;IKZF1:0.310339238795;FOXD3:0.308338963423;NHLH1,2:0.303368534956;RXR{A,B,G}:0.299073141885;ZBTB16:0.291530775527;PAX8:0.291017712597;KLF4:0.281695006253;ARID5B:0.278306201675;EVI1:0.258946864216;HOX{A4,D4}:0.248342737348;PATZ1:0.246236114514;bHLH_family:0.212422983245;ZIC1..3:0.209533174719;NKX2-3_NKX2-5:0.198772748596;E2F1..5:0.189331333875;POU1F1:0.188779668463;STAT1,3:0.183642822933;SOX5:0.176328935697;NFE2L2:0.151845107995;AHR_ARNT_ARNT2:0.150872998771;PAX5:0.149537483534;ELK1,4_GABP{A,B1}:0.138691469671;NFY{A,B,C}:0.136167136542;NR5A1,2:0.133447658523;NANOG{mouse}:0.131385441046;HNF1A:0.128500266582;TLX2:0.124749397839;PRRX1,2:0.106798636021;TGIF1:0.104219124801;TFAP2{A,C}:0.0926333876715;LEF1_TCF7_TCF7L1,2:0.0924020947735;MYB:0.0921645723494;MYFfamily:0.086181448109;CRX:0.0747835298424;SP1:0.0739691581958;ESRRA:0.071589541723;HLF:0.0598816015007;ZNF384:0.0570606763778;HNF4A_NR2F1,2:0.0511989049864;ZNF423:0.0455092007097;PDX1:0.0416899423909;ZNF143:0.0373016229143;NR1H4:0.0352876923994;HOXA9_MEIS1:0.0348788095586;HOX{A6,A7,B6,B7}:0.0343509350227;FOXA2:0.0314336246285;TOPORS:0.0257370373227;PRDM1:0.0132975788303;NRF1:0.0103156046199;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00600470481848;RXRA_VDR{dimer}:-0.0120187819427;TFCP2:-0.0179401594817;NR6A1:-0.0205509756842;BPTF:-0.0437761716302;HIC1:-0.0595215337747;FOXM1:-0.0625173883939;XCPE1{core}:-0.0647243552579;MTE{core}:-0.0955993020238;FOS_FOS{B,L1}_JUN{B,D}:-0.119765671707;NKX3-2:-0.124390621188;AR:-0.130801000176;FOXQ1:-0.13786030792;ONECUT1,2:-0.138651076151;RFX1:-0.139197651104;BACH2:-0.142106101477;IRF7:-0.143761201812;MEF2{A,B,C,D}:-0.147771918895;NFE2:-0.148370617189;STAT2,4,6:-0.156789635771;PITX1..3:-0.17988821616;CEBPA,B_DDIT3:-0.187363276441;GATA4:-0.190969232854;T:-0.191140851974;PPARG:-0.193762945769;FOX{F1,F2,J1}:-0.215626225424;DMAP1_NCOR{1,2}_SMARC:-0.217030489818;IRF1,2:-0.223434745081;NANOG:-0.228353290183;ATF2:-0.242640638488;HIF1A:-0.244392118448;OCT4_SOX2{dimer}:-0.28783079625;SMAD1..7,9:-0.292607159027;FOX{D1,D2}:-0.302097381937;FOXO1,3,4:-0.302570743308;ZFP161:-0.306312165781;ZNF148:-0.306441319458;RORA:-0.310001974842;FOSL2:-0.310049968047;ZBTB6:-0.31025659601;ELF1,2,4:-0.31561805551;PBX1:-0.318905787193;PAX6:-0.334077714204;MTF1:-0.352889051599;FOXP3:-0.358659188217;REST:-0.363880353077;EGR1..3:-0.364460078041;POU6F1:-0.365629566773;RUNX1..3:-0.376977869914;NFKB1_REL_RELA:-0.379825104261;POU5F1:-0.384181203495;PAX2:-0.384627545522;JUN:-0.408973705597;RREB1:-0.41856683506;SOX2:-0.420660861819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.444527604971;RFX2..5_RFXANK_RFXAP:-0.45609464539;IKZF2:-0.457640091057;CUX2:-0.464613235286;CREB1:-0.470156863323;TFAP2B:-0.484000375662;ATF4:-0.489402378691;LMO2:-0.492212648162;MED-1{core}:-0.500165659492;ETS1,2:-0.502479900908;FOXN1:-0.506030497962;SPIB:-0.539652480622;ATF5_CREB3:-0.560895359393;GATA6:-0.572159894401;SOX{8,9,10}:-0.590243217059;SPI1:-0.622070638145;NFIL3:-0.624335774044;PAX3,7:-0.630369912712;HMX1:-0.636386988102;VSX1,2:-0.695995362791;NFE2L1:-0.722139499153;POU2F1..3:-0.755861405583;SNAI1..3:-0.758462325415;ALX1:-0.830913688028;BREu{core}:-0.875053667898;RBPJ:-0.876508813804;EP300:-0.972520839144;ZEB1:-1.06763561566;MYOD1:-1.10666685461 | |top_motifs=TAL1_TCF{3,4,12}:2.22023411058;NKX3-1:2.04014604399;DBP:1.89613249291;TEF:1.84797834922;MYBL2:1.58057941144;HSF1,2:1.33021168584;GZF1:1.32583978052;NKX2-2,8:1.32088948743;TFAP4:1.32023803386;ZNF238:1.29079941248;CDC5L:1.28502399675;GFI1B:1.20191781522;LHX3,4:1.15033307573;TEAD1:1.10716624134;NFIX:1.00781003868;AIRE:1.00590326794;NR3C1:1.00151367335;TBX4,5:0.998984611232;HMGA1,2:0.953341201981;POU3F1..4:0.879188147113;FOXL1:0.874976153128;SRF:0.868418917482;GFI1:0.852869680078;HAND1,2:0.782550783942;ALX4:0.770226105549;GTF2A1,2:0.73415379634;TLX1..3_NFIC{dimer}:0.711883467903;ATF6:0.705849434459;TP53:0.678530955657;PAX4:0.668526850404;HOX{A5,B5}:0.6551269546;SREBF1,2:0.645527747517;ESR1:0.643031092331;PAX1,9:0.622428055097;NKX2-1,4:0.621388009768;SOX17:0.618170992349;EBF1:0.611006998041;SPZ1:0.592034468586;YY1:0.579145139415;FOX{I1,J2}:0.578921697562;GCM1,2:0.540519956567;TBP:0.533017748157;UFEwm:0.531735140049;MZF1:0.51858414589;NFATC1..3:0.512805043197;HBP1_HMGB_SSRP1_UBTF:0.506966328457;HES1:0.493442117278;STAT5{A,B}:0.46058429699;GTF2I:0.439862844191;CDX1,2,4:0.42965172091;GLI1..3:0.425669987324;TFDP1:0.418112692915;ADNP_IRX_SIX_ZHX:0.411282052862;MAZ:0.391514040521;EN1,2:0.388332183554;NKX6-1,2:0.387785278247;FOXP1:0.385144522114;XBP1:0.337222574748;MAFB:0.311188994989;IKZF1:0.310339238795;FOXD3:0.308338963423;NHLH1,2:0.303368534956;RXR{A,B,G}:0.299073141885;ZBTB16:0.291530775527;PAX8:0.291017712597;KLF4:0.281695006253;ARID5B:0.278306201675;EVI1:0.258946864216;HOX{A4,D4}:0.248342737348;PATZ1:0.246236114514;bHLH_family:0.212422983245;ZIC1..3:0.209533174719;NKX2-3_NKX2-5:0.198772748596;E2F1..5:0.189331333875;POU1F1:0.188779668463;STAT1,3:0.183642822933;SOX5:0.176328935697;NFE2L2:0.151845107995;AHR_ARNT_ARNT2:0.150872998771;PAX5:0.149537483534;ELK1,4_GABP{A,B1}:0.138691469671;NFY{A,B,C}:0.136167136542;NR5A1,2:0.133447658523;NANOG{mouse}:0.131385441046;HNF1A:0.128500266582;TLX2:0.124749397839;PRRX1,2:0.106798636021;TGIF1:0.104219124801;TFAP2{A,C}:0.0926333876715;LEF1_TCF7_TCF7L1,2:0.0924020947735;MYB:0.0921645723494;MYFfamily:0.086181448109;CRX:0.0747835298424;SP1:0.0739691581958;ESRRA:0.071589541723;HLF:0.0598816015007;ZNF384:0.0570606763778;HNF4A_NR2F1,2:0.0511989049864;ZNF423:0.0455092007097;PDX1:0.0416899423909;ZNF143:0.0373016229143;NR1H4:0.0352876923994;HOXA9_MEIS1:0.0348788095586;HOX{A6,A7,B6,B7}:0.0343509350227;FOXA2:0.0314336246285;TOPORS:0.0257370373227;PRDM1:0.0132975788303;NRF1:0.0103156046199;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00600470481848;RXRA_VDR{dimer}:-0.0120187819427;TFCP2:-0.0179401594817;NR6A1:-0.0205509756842;BPTF:-0.0437761716302;HIC1:-0.0595215337747;FOXM1:-0.0625173883939;XCPE1{core}:-0.0647243552579;MTE{core}:-0.0955993020238;FOS_FOS{B,L1}_JUN{B,D}:-0.119765671707;NKX3-2:-0.124390621188;AR:-0.130801000176;FOXQ1:-0.13786030792;ONECUT1,2:-0.138651076151;RFX1:-0.139197651104;BACH2:-0.142106101477;IRF7:-0.143761201812;MEF2{A,B,C,D}:-0.147771918895;NFE2:-0.148370617189;STAT2,4,6:-0.156789635771;PITX1..3:-0.17988821616;CEBPA,B_DDIT3:-0.187363276441;GATA4:-0.190969232854;T:-0.191140851974;PPARG:-0.193762945769;FOX{F1,F2,J1}:-0.215626225424;DMAP1_NCOR{1,2}_SMARC:-0.217030489818;IRF1,2:-0.223434745081;NANOG:-0.228353290183;ATF2:-0.242640638488;HIF1A:-0.244392118448;OCT4_SOX2{dimer}:-0.28783079625;SMAD1..7,9:-0.292607159027;FOX{D1,D2}:-0.302097381937;FOXO1,3,4:-0.302570743308;ZFP161:-0.306312165781;ZNF148:-0.306441319458;RORA:-0.310001974842;FOSL2:-0.310049968047;ZBTB6:-0.31025659601;ELF1,2,4:-0.31561805551;PBX1:-0.318905787193;PAX6:-0.334077714204;MTF1:-0.352889051599;FOXP3:-0.358659188217;REST:-0.363880353077;EGR1..3:-0.364460078041;POU6F1:-0.365629566773;RUNX1..3:-0.376977869914;NFKB1_REL_RELA:-0.379825104261;POU5F1:-0.384181203495;PAX2:-0.384627545522;JUN:-0.408973705597;RREB1:-0.41856683506;SOX2:-0.420660861819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.444527604971;RFX2..5_RFXANK_RFXAP:-0.45609464539;IKZF2:-0.457640091057;CUX2:-0.464613235286;CREB1:-0.470156863323;TFAP2B:-0.484000375662;ATF4:-0.489402378691;LMO2:-0.492212648162;MED-1{core}:-0.500165659492;ETS1,2:-0.502479900908;FOXN1:-0.506030497962;SPIB:-0.539652480622;ATF5_CREB3:-0.560895359393;GATA6:-0.572159894401;SOX{8,9,10}:-0.590243217059;SPI1:-0.622070638145;NFIL3:-0.624335774044;PAX3,7:-0.630369912712;HMX1:-0.636386988102;VSX1,2:-0.695995362791;NFE2L1:-0.722139499153;POU2F1..3:-0.755861405583;SNAI1..3:-0.758462325415;ALX1:-0.830913688028;BREu{core}:-0.875053667898;RBPJ:-0.876508813804;EP300:-0.972520839144;ZEB1:-1.06763561566;MYOD1:-1.10666685461 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11239-116D6;search_select_hide=table117:FF:11239-116D6 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Smooth Muscle Cells - Colonic, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10868 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10868
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10868
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.502 |
| 10 | 10 | 0.887 |
| 100 | 100 | 0.0559 |
| 101 | 101 | 0.552 |
| 102 | 102 | 0.00264 |
| 103 | 103 | 0.647 |
| 104 | 104 | 0.815 |
| 105 | 105 | 0.933 |
| 106 | 106 | 0.151 |
| 107 | 107 | 0.462 |
| 108 | 108 | 0.478 |
| 109 | 109 | 0.348 |
| 11 | 11 | 0.76 |
| 110 | 110 | 0.369 |
| 111 | 111 | 0.314 |
| 112 | 112 | 0.617 |
| 113 | 113 | 0.894 |
| 114 | 114 | 0.536 |
| 115 | 115 | 0.773 |
| 116 | 116 | 0.173 |
| 117 | 117 | 0.323 |
| 118 | 118 | 0.466 |
| 119 | 119 | 0.283 |
| 12 | 12 | 0.168 |
| 120 | 120 | 0.54 |
| 121 | 121 | 0.72 |
| 122 | 122 | 0.00325 |
| 123 | 123 | 0.0142 |
| 124 | 124 | 0.553 |
| 125 | 125 | 0.751 |
| 126 | 126 | 0.732 |
| 127 | 127 | 0.115 |
| 128 | 128 | 0.709 |
| 129 | 129 | 0.348 |
| 13 | 13 | 0.509 |
| 130 | 130 | 0.0318 |
| 131 | 131 | 0.44 |
| 132 | 132 | 0.715 |
| 133 | 133 | 0.583 |
| 134 | 134 | 0.972 |
| 135 | 135 | 0.93 |
| 136 | 136 | 0.754 |
| 137 | 137 | 0.023 |
| 138 | 138 | 0.602 |
| 139 | 139 | 0.0724 |
| 14 | 14 | 0.19 |
| 140 | 140 | 0.357 |
| 141 | 141 | 0.68 |
| 142 | 142 | 0.235 |
| 143 | 143 | 0.229 |
| 144 | 144 | 0.378 |
| 145 | 145 | 0.744 |
| 146 | 146 | 0.387 |
| 147 | 147 | 0.151 |
| 148 | 148 | 0.8 |
| 149 | 149 | 0.321 |
| 15 | 15 | 0.0911 |
| 150 | 150 | 0.885 |
| 151 | 151 | 0.719 |
| 152 | 152 | 0.869 |
| 153 | 153 | 0.639 |
| 154 | 154 | 0.385 |
| 155 | 155 | 8.1771e-5 |
| 156 | 156 | 0.458 |
| 157 | 157 | 0.222 |
| 158 | 158 | 0.00634 |
| 159 | 159 | 0.24 |
| 16 | 16 | 0.451 |
| 160 | 160 | 0.772 |
| 161 | 161 | 0.657 |
| 162 | 162 | 0.257 |
| 163 | 163 | 0.575 |
| 164 | 164 | 0.786 |
| 165 | 165 | 0.449 |
| 166 | 166 | 0.0154 |
| 167 | 167 | 0.351 |
| 168 | 168 | 0.187 |
| 169 | 169 | 0.384 |
| 17 | 17 | 0.616 |
| 18 | 18 | 0.538 |
| 19 | 19 | 0.0195 |
| 2 | 2 | 0.898 |
| 20 | 20 | 0.426 |
| 21 | 21 | 0.563 |
| 22 | 22 | 0.937 |
| 23 | 23 | 0.813 |
| 24 | 24 | 0.731 |
| 25 | 25 | 0.146 |
| 26 | 26 | 0.658 |
| 27 | 27 | 0.665 |
| 28 | 28 | 0.202 |
| 29 | 29 | 0.895 |
| 3 | 3 | 0.657 |
| 30 | 30 | 0.729 |
| 31 | 31 | 0.937 |
| 32 | 32 | 3.54749e-9 |
| 33 | 33 | 0.637 |
| 34 | 34 | 0.972 |
| 35 | 35 | 0.268 |
| 36 | 36 | 0.206 |
| 37 | 37 | 0.693 |
| 38 | 38 | 0.297 |
| 39 | 39 | 0.478 |
| 4 | 4 | 0.0518 |
| 40 | 40 | 0.416 |
| 41 | 41 | 0.008 |
| 42 | 42 | 0.585 |
| 43 | 43 | 0.469 |
| 44 | 44 | 0.505 |
| 45 | 45 | 0.198 |
| 46 | 46 | 0.582 |
| 47 | 47 | 0.542 |
| 48 | 48 | 0.529 |
| 49 | 49 | 0.119 |
| 5 | 5 | 0.68 |
| 50 | 50 | 0.557 |
| 51 | 51 | 1 |
| 52 | 52 | 0.789 |
| 53 | 53 | 0.215 |
| 54 | 54 | 0.809 |
| 55 | 55 | 0.201 |
| 56 | 56 | 0.76 |
| 57 | 57 | 0.917 |
| 58 | 58 | 0.127 |
| 59 | 59 | 0.199 |
| 6 | 6 | 0.768 |
| 60 | 60 | 0.079 |
| 61 | 61 | 0.384 |
| 62 | 62 | 0.161 |
| 63 | 63 | 0.946 |
| 64 | 64 | 0.569 |
| 65 | 65 | 0.639 |
| 66 | 66 | 0.351 |
| 67 | 67 | 0.852 |
| 68 | 68 | 0.466 |
| 69 | 69 | 0.445 |
| 7 | 7 | 0.306 |
| 70 | 70 | 0.00794 |
| 71 | 71 | 0.244 |
| 72 | 72 | 0.333 |
| 73 | 73 | 0.469 |
| 74 | 74 | 0.117 |
| 75 | 75 | 0.437 |
| 76 | 76 | 0.853 |
| 77 | 77 | 0.52 |
| 78 | 78 | 0.211 |
| 79 | 79 | 0.25 |
| 8 | 8 | 0.621 |
| 80 | 80 | 0.132 |
| 81 | 81 | 0.855 |
| 82 | 82 | 0.347 |
| 83 | 83 | 0.721 |
| 84 | 84 | 0.338 |
| 85 | 85 | 0.232 |
| 86 | 86 | 0.904 |
| 87 | 87 | 0.813 |
| 88 | 88 | 0.469 |
| 89 | 89 | 0.713 |
| 9 | 9 | 0.892 |
| 90 | 90 | 0.589 |
| 91 | 91 | 0.676 |
| 92 | 92 | 0.499 |
| 93 | 93 | 0.54 |
| 94 | 94 | 0.389 |
| 95 | 95 | 0.782 |
| 96 | 96 | 0.292 |
| 97 | 97 | 0.584 |
| 98 | 98 | 0.0643 |
| 99 | 99 | 4.22916e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10868
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
