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(Created page with "{{f5samples |id=FF:11367-117I8 |name=Smooth Muscle Cells - Umbilical Artery, donor2 |sample_id=11367 |rna_tube_id=117I8 |rna_box=117 |rna_position=I8 |sample_cell_lot=N...")
 
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{{f5samples
{{f5samples
|id=FF:11367-117I8
|DRA_sample_Accession=CAGE@SAMD00005759
|name=Smooth Muscle Cells - Umbilical Artery, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005759
|sample_id=11367
|accession_numbers=CAGE;DRX008508;DRR009380;DRZ000805;DRZ002190;DRZ012155;DRZ013540
|rna_tube_id=117I8
|accession_numbers_RNASeq=sRNA-Seq;DRX037032;DRR041398;DRZ007040
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=I8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1438.00000
|rna_catalog_number=CA252-R10n
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=infant
|sample_tissue=umbilical artery
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=neonatal
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs11991,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10003,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002594
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001310,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004572,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.04!109.06!SOX17;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.60!38.42!ZBED1;;chr4:174450089..174450153,-!p2@HAND2!1.39!23.55!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.36!21.69!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!101.31!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.95!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.24!39.66!FOXC2;;chr2:68592406..68592424,+!p1@PLEK!1.23!16.11!PLEK;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.49!SPI1;;chr6:34204921..34204939,+!p3@HMGA1!1.19!426.63!HMGA1;;chr10:94449703..94449718,+!p1@HHEX!1.17!52.67!HHEX;;chr12:66218836..66218888,+!p1@HMGA2!1.16!124.55!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.13!20.76!FOXD1;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.46!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.10!45.23!FOSL1;;chr2:176969228..176969260,+!p1@HOXD11!1.08!11.15!HOXD11;;chr11:34642612..34642646,+!p1@EHF!1.06!10.53!EHF;;chr5:72744594..72744609,-!p1@FOXD1!1.04!45.85!FOXD1;;chr7:27224842..27224872,-!p1@HOXA11!1.00!8.98!HOXA11;;chr7:35293685..35293718,-!p1@TBX20!1.00!8.98!TBX20;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.68!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.70!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.77!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.97!27.57!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.87!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.78!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.96!35.01!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.96!9.29!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!0.96!8.06!PITX2;;chr5:134369879..134369898,-!p2@PITX1!0.96!8.06!PITX1;;chr12:54366975..54367001,+!p1@HOXC11!0.94!7.75!HOXC11;;chr19:45260775..45260838,+!p5@BCL3!0.93!9.91!BCL3;;chr19:42636586..42636607,-!p1@POU2F2!0.91!20.45!POU2F2;;chr12:66218904..66218913,+!p11@HMGA2!0.91!7.13!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.89!32.22!TOX2;;chr18:19749541..19749557,+!p1@GATA6!0.89!22.00!GATA6;;chr5:134369905..134369972,-!p1@PITX1!0.89!10.53!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!0.88!184.34!FOSL1;;chr12:54380404..54380433,+!p3@HOXC10!0.88!6.51!HOXC10;;chr1:8934931..8934947,-!p4@ENO1!0.86!21.69!ENO1;;chr12:27485762..27485776,+!p3@ARNTL2!0.86!17.66!ARNTL2;;chr12:54378923..54378966,+!p1@HOXC10!0.86!6.20!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.86!6.20!HOXC5;;chr7:27224795..27224840,-!p2@HOXA11!0.86!6.20!HOXA11;;chr20:42543506..42543549,+!p2@TOX2!0.85!15.18!TOX2;;chr1:170633262..170633285,+!p3@PRRX1!0.85!7.13!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.13!BNC1;;chr1:151032860..151032918,+!p1@MLLT11!0.84!74.36!MLLT11;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.58!SMAD3;;chr6:134210243..134210257,+!p1@TCF21!0.82!5.58!TCF21;;chr4:81118647..81118666,+!p1@PRDM8!0.81!7.44!PRDM8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.80!414.85!TAX1BP3;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.27!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!0.80!5.27!SOX11;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.27!HOXA10;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.72!DRAP1;;chr15:67418119..67418162,+!p5@SMAD3!0.79!5.89!SMAD3;;chr7:44143925..44143970,+!p1@AEBP1!0.78!123.00!AEBP1;;chr12:80085061..80085119,-!p6@PAWR!0.78!8.37!PAWR;;chr18:19749386..19749404,+!p2@GATA6!0.78!7.44!GATA6;;chr7:27205136..27205164,-!p1@HOXA9!0.78!4.96!HOXA9;;chr1:37940170..37940190,+!p1@ZC3H12A!0.77!66.30!ZC3H12A;;chr1:25256756..25256774,-!p1@RUNX3!0.77!9.60!RUNX3;;chr2:239756739..239756755,+!p2@TWIST2!0.77!8.68!TWIST2;;chr7:44143978..44143989,+!p2@AEBP1!0.76!9.29!AEBP1;;chr15:67418047..67418093,+!p4@SMAD3!0.76!6.20!SMAD3;;chr12:54778471..54778528,-!p1@ZNF385A!0.75!4.65!ZNF385A;;chr6:34204672..34204692,+!p1@HMGA1!0.73!558.92!HMGA1;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.27!FOXD1;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.34!MAFK;;chr2:102091144..102091183,-!p2@RFX8!0.73!4.34!RFX8;;chr17:46682321..46682362,-!p1@HOXB6!0.73!4.34!HOXB6;;chr7:19157248..19157268,-!p1@TWIST1!0.72!13.01!TWIST1;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.68!HMGA2;;chr1:151032922..151032951,+!p2@MLLT11!0.72!7.44!MLLT11;;chr7:44143997..44144008,+!p3@AEBP1!0.72!5.58!AEBP1;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.25!TBX2;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.20!CREB3;;chr5:72744562..72744573,-!p3@FOXD1!0.71!5.27!FOXD1;;chr12:124873357..124873401,-!p1@NCOR2!0.70!52.67!NCOR2;;chr17:59477275..59477286,+!p3@TBX2!0.70!5.58!TBX2;;chr2:19558373..19558392,-!p1@OSR1!0.67!11.15!OSR1;;chr6:1312325..1312340,+!p1@FOXQ1!0.67!6.51!FOXQ1;;chr8:72756667..72756736,-!p2@MSC!0.67!6.20!MSC;;chr5:72744336..72744359,-!p5@FOXD1!0.67!3.72!FOXD1;;chr6:391743..391759,+!p1@IRF4!0.67!3.72!IRF4;;chr8:55370720..55370733,+!p2@SOX17!0.67!3.72!SOX17;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.72!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.72!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!0.67!3.72!SIM2;;chr4:174451350..174451363,-!p3@HAND2!0.67!3.72!HAND2;;chr19:16435625..16435682,+!p1@KLF2!0.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Line 67: Line 43:
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GGTAGC.11367
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|name=Smooth Muscle Cells - Umbilical Artery, donor2
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|rna_box=117
|rna_catalog_number=CA252-R10n
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1438
|rna_od260/230=
|rna_od260/280=
|rna_position=I8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117I8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.GGTAGC
|sample_age=neonatal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=infant
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.96868448377116e-222!GO:0005737;cytoplasm;2.69654897578526e-210!GO:0043226;organelle;2.46098973392863e-167!GO:0043229;intracellular organelle;4.28405756137612e-167!GO:0043231;intracellular membrane-bound organelle;4.64166294000734e-157!GO:0043227;membrane-bound organelle;4.64166294000734e-157!GO:0044444;cytoplasmic part;3.02916985693172e-144!GO:0044422;organelle part;1.03368510881294e-137!GO:0044446;intracellular organelle part;5.30151949097667e-136!GO:0005515;protein binding;5.38578147820062e-102!GO:0032991;macromolecular complex;6.81715575911407e-102!GO:0030529;ribonucleoprotein complex;5.72210621588056e-83!GO:0044237;cellular metabolic process;1.47313606090158e-75!GO:0044238;primary metabolic process;2.68090036106048e-75!GO:0005739;mitochondrion;2.0966300148901e-68!GO:0043170;macromolecule metabolic process;4.11588816466234e-67!GO:0043233;organelle lumen;5.48411839058299e-65!GO:0031974;membrane-enclosed lumen;5.48411839058299e-65!GO:0044428;nuclear part;1.29737414473322e-60!GO:0003723;RNA binding;8.63432966330356e-57!GO:0019538;protein metabolic process;1.4861798085302e-55!GO:0006412;translation;9.40287148410065e-55!GO:0005840;ribosome;3.32355979527054e-54!GO:0016043;cellular component organization and biogenesis;1.15767905785893e-53!GO:0043234;protein complex;4.16391553375928e-53!GO:0031090;organelle membrane;2.06911023516266e-51!GO:0005634;nucleus;8.17494831661833e-51!GO:0044260;cellular macromolecule metabolic process;1.65024850331372e-49!GO:0044267;cellular protein metabolic process;1.44201383453113e-48!GO:0003735;structural constituent of ribosome;1.52698073939574e-48!GO:0009058;biosynthetic process;1.73416314128494e-47!GO:0044429;mitochondrial part;1.17159604795326e-46!GO:0044249;cellular biosynthetic process;1.46233533034671e-44!GO:0009059;macromolecule biosynthetic process;1.67299570575734e-44!GO:0005829;cytosol;2.18117423157875e-44!GO:0015031;protein transport;2.08602740118337e-42!GO:0031967;organelle envelope;2.65567056935389e-42!GO:0031975;envelope;7.08685464505256e-42!GO:0033279;ribosomal subunit;1.35780012953402e-41!GO:0033036;macromolecule localization;2.95402728344456e-41!GO:0006396;RNA processing;1.12388102426738e-39!GO:0045184;establishment of protein localization;2.38810912392429e-39!GO:0008104;protein localization;4.09217274785184e-39!GO:0031981;nuclear lumen;5.66451832201241e-37!GO:0046907;intracellular transport;6.32842015338526e-36!GO:0043228;non-membrane-bound organelle;7.97798153539049e-36!GO:0043232;intracellular non-membrane-bound organelle;7.97798153539049e-36!GO:0006996;organelle organization and biogenesis;8.63937779160664e-35!GO:0065003;macromolecular complex assembly;6.23019145994276e-32!GO:0005740;mitochondrial envelope;7.18136281725258e-32!GO:0043283;biopolymer metabolic process;1.66951799888827e-30!GO:0031966;mitochondrial membrane;3.18032347490169e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.55292326402873e-30!GO:0016071;mRNA metabolic process;1.02564120832776e-29!GO:0006886;intracellular protein transport;1.84547890503709e-29!GO:0022607;cellular component assembly;2.12369283347208e-29!GO:0008380;RNA splicing;7.83682361799859e-29!GO:0019866;organelle inner membrane;1.24494039672404e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.43336985069014e-27!GO:0005743;mitochondrial inner membrane;5.71665235918344e-27!GO:0010467;gene expression;1.1358589713872e-26!GO:0044445;cytosolic part;1.1942335491177e-25!GO:0006397;mRNA processing;1.21160707182685e-25!GO:0051649;establishment of cellular localization;1.2505735822733e-24!GO:0051641;cellular localization;1.67039496855643e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.6285959333835e-23!GO:0006119;oxidative phosphorylation;1.82365427097331e-22!GO:0015934;large ribosomal subunit;2.3179489687834e-22!GO:0044455;mitochondrial membrane part;4.16800862188757e-22!GO:0005681;spliceosome;1.2752473658372e-21!GO:0005654;nucleoplasm;1.80146007622506e-21!GO:0005783;endoplasmic reticulum;5.87004002888539e-21!GO:0006259;DNA metabolic process;1.06082530844573e-20!GO:0015935;small ribosomal subunit;3.04783302453039e-20!GO:0012505;endomembrane system;1.85238537276942e-19!GO:0012501;programmed cell death;4.77856605196572e-19!GO:0006457;protein folding;8.3832044678427e-19!GO:0007049;cell cycle;9.24547893627273e-19!GO:0006915;apoptosis;1.19082349581683e-18!GO:0048770;pigment granule;2.48439812676526e-18!GO:0042470;melanosome;2.48439812676526e-18!GO:0031980;mitochondrial lumen;3.07942746555385e-18!GO:0005759;mitochondrial matrix;3.07942746555385e-18!GO:0000166;nucleotide binding;3.53120939136763e-18!GO:0044451;nucleoplasm part;7.86674080428523e-18!GO:0005746;mitochondrial respiratory chain;8.3717778678364e-18!GO:0008219;cell death;2.57632625911726e-17!GO:0016265;death;2.57632625911726e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.25999802214453e-17!GO:0008134;transcription factor binding;1.32200973077952e-16!GO:0016462;pyrophosphatase activity;1.93084834395816e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.52555660288939e-16!GO:0005730;nucleolus;3.26490415012562e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.28857267644852e-16!GO:0044432;endoplasmic reticulum part;3.30778533299734e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.40228288062737e-16!GO:0051186;cofactor metabolic process;6.21476382888538e-16!GO:0005794;Golgi apparatus;6.61675074758572e-16!GO:0017111;nucleoside-triphosphatase activity;7.08305843753114e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.99564884869682e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.01454919319184e-15!GO:0003954;NADH dehydrogenase activity;1.01454919319184e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.01454919319184e-15!GO:0022618;protein-RNA complex assembly;3.22251332673888e-15!GO:0006605;protein targeting;3.59202078088678e-15!GO:0005761;mitochondrial ribosome;4.08242377612306e-15!GO:0000313;organellar ribosome;4.08242377612306e-15!GO:0022402;cell cycle process;4.40301398980734e-15!GO:0044265;cellular macromolecule catabolic process;8.38880863285854e-15!GO:0043285;biopolymer catabolic process;1.08384284823997e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.20287164340849e-14!GO:0016874;ligase activity;1.31892922249674e-14!GO:0000278;mitotic cell cycle;1.95421238910591e-14!GO:0016192;vesicle-mediated transport;2.06441091345736e-14!GO:0009057;macromolecule catabolic process;2.39142351173392e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.44223089948505e-14!GO:0043412;biopolymer modification;6.44916379781319e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.46011959699999e-14!GO:0042773;ATP synthesis coupled electron transport;9.46011959699999e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.65264223521526e-14!GO:0045271;respiratory chain complex I;9.65264223521526e-14!GO:0005747;mitochondrial respiratory chain complex I;9.65264223521526e-14!GO:0048523;negative regulation of cellular process;1.63845889665363e-13!GO:0009055;electron carrier activity;2.12492192623566e-13!GO:0032553;ribonucleotide binding;2.33006071713062e-13!GO:0032555;purine ribonucleotide binding;2.33006071713062e-13!GO:0017076;purine nucleotide binding;2.53947764378923e-13!GO:0044248;cellular catabolic process;3.4454165755279e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.45103525065247e-13!GO:0008135;translation factor activity, nucleic acid binding;5.42768974220617e-13!GO:0051082;unfolded protein binding;6.80307315061774e-13!GO:0042254;ribosome biogenesis and assembly;6.96907487619298e-13!GO:0048193;Golgi vesicle transport;1.52842378038941e-12!GO:0006464;protein modification process;1.55749981599781e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.02465815001827e-12!GO:0006732;coenzyme metabolic process;2.1131809189125e-12!GO:0043067;regulation of programmed cell death;2.62323420486549e-12!GO:0042981;regulation of apoptosis;2.95225061058459e-12!GO:0019941;modification-dependent protein catabolic process;3.01878899380631e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.01878899380631e-12!GO:0006512;ubiquitin cycle;3.18395699905265e-12!GO:0030163;protein catabolic process;3.60498374187342e-12!GO:0044257;cellular protein catabolic process;5.01041576682803e-12!GO:0006511;ubiquitin-dependent protein catabolic process;5.20463416138783e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.34968176602339e-12!GO:0000375;RNA splicing, via transesterification reactions;5.34968176602339e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.34968176602339e-12!GO:0048519;negative regulation of biological process;6.68287004238835e-12!GO:0005793;ER-Golgi intermediate compartment;1.80134395389789e-11!GO:0005635;nuclear envelope;1.92001701418425e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.27089681140496e-11!GO:0005789;endoplasmic reticulum membrane;4.9922337645748e-11!GO:0009259;ribonucleotide metabolic process;5.04086354915383e-11!GO:0006913;nucleocytoplasmic transport;6.32682741291821e-11!GO:0005524;ATP binding;1.24364924165514e-10!GO:0051169;nuclear transport;1.64332544131272e-10!GO:0006461;protein complex assembly;2.53288739338409e-10!GO:0006163;purine nucleotide metabolic process;2.93535492287712e-10!GO:0032559;adenyl ribonucleotide binding;2.93790992942336e-10!GO:0009150;purine ribonucleotide metabolic process;2.95529164485778e-10!GO:0043687;post-translational protein modification;3.13283826813008e-10!GO:0003743;translation initiation factor activity;3.45147775686609e-10!GO:0031965;nuclear membrane;4.02730446604646e-10!GO:0044453;nuclear membrane part;4.02730446604646e-10!GO:0030554;adenyl nucleotide binding;4.08080247601078e-10!GO:0051726;regulation of cell cycle;4.26320390684118e-10!GO:0051246;regulation of protein metabolic process;5.03468541570627e-10!GO:0000074;regulation of progression through cell cycle;5.35363438340637e-10!GO:0000087;M phase of mitotic cell cycle;6.4439903378263e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.4439903378263e-10!GO:0003712;transcription cofactor activity;6.73778609165378e-10!GO:0007067;mitosis;7.30309509788526e-10!GO:0022403;cell cycle phase;1.08841186044453e-09!GO:0009260;ribonucleotide biosynthetic process;1.27690203992552e-09!GO:0017038;protein import;1.74492428441493e-09!GO:0006413;translational initiation;2.03276489586628e-09!GO:0006399;tRNA metabolic process;2.2043888784158e-09!GO:0005694;chromosome;2.42516474599833e-09!GO:0008565;protein transporter activity;2.50744901597138e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.60581609351205e-09!GO:0006164;purine nucleotide biosynthetic process;2.60581609351205e-09!GO:0006974;response to DNA damage stimulus;2.62476631444557e-09!GO:0051276;chromosome organization and biogenesis;2.6647707017591e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.091242059092e-09!GO:0043069;negative regulation of programmed cell death;3.14979806125208e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.01170261107896e-09!GO:0044427;chromosomal part;5.00054293411719e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.21750353796012e-09!GO:0003676;nucleic acid binding;6.18814881750488e-09!GO:0009141;nucleoside triphosphate metabolic process;6.59849632885343e-09!GO:0043066;negative regulation of apoptosis;7.61148370547394e-09!GO:0016604;nuclear body;7.74741337219784e-09!GO:0006446;regulation of translational initiation;7.99144253674892e-09!GO:0009056;catabolic process;8.75059564377218e-09!GO:0009060;aerobic respiration;9.13999646471621e-09!GO:0006364;rRNA processing;1.02947690825376e-08!GO:0005768;endosome;1.02947690825376e-08!GO:0048522;positive regulation of cellular process;1.07747660505566e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.16103043560108e-08!GO:0006323;DNA packaging;1.26407303411051e-08!GO:0007005;mitochondrion organization and biogenesis;1.26407303411051e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.2826340103489e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.2826340103489e-08!GO:0006916;anti-apoptosis;1.34245884769342e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.39171725081788e-08!GO:0065004;protein-DNA complex assembly;2.12049919725737e-08!GO:0016072;rRNA metabolic process;2.13650038733249e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.26193285677222e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.33990069416064e-08!GO:0005643;nuclear pore;2.89822812430895e-08!GO:0030120;vesicle coat;3.25493001351301e-08!GO:0030662;coated vesicle membrane;3.25493001351301e-08!GO:0065002;intracellular protein transport across a membrane;3.56749658827341e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.72744155835259e-08!GO:0051188;cofactor biosynthetic process;3.81735632898112e-08!GO:0015986;ATP synthesis coupled proton transport;4.16566517407092e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.16566517407092e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.66228154844355e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.66228154844355e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.0155261904235e-08!GO:0006333;chromatin assembly or disassembly;5.64839662153091e-08!GO:0019829;cation-transporting ATPase activity;5.79406756016474e-08!GO:0045333;cellular respiration;5.79406756016474e-08!GO:0006366;transcription from RNA polymerase II promoter;6.04494588388554e-08!GO:0003924;GTPase activity;6.04971366085084e-08!GO:0006260;DNA replication;6.05950961363363e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.24889997038493e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.24889997038493e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.24889997038493e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.68276651134969e-08!GO:0006793;phosphorus metabolic process;9.00212260284973e-08!GO:0006796;phosphate metabolic process;9.00212260284973e-08!GO:0046034;ATP metabolic process;9.05516262143407e-08!GO:0006334;nucleosome assembly;9.37755273108116e-08!GO:0048475;coated membrane;9.40249697356933e-08!GO:0030117;membrane coat;9.40249697356933e-08!GO:0016491;oxidoreductase activity;9.41488387116661e-08!GO:0005788;endoplasmic reticulum lumen;1.07372669089718e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14818395173281e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14818395173281e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.23382105512125e-07!GO:0008639;small protein conjugating enzyme activity;1.28463190260574e-07!GO:0043038;amino acid activation;1.3466050323606e-07!GO:0006418;tRNA aminoacylation for protein translation;1.3466050323606e-07!GO:0043039;tRNA aminoacylation;1.3466050323606e-07!GO:0042623;ATPase activity, coupled;1.41508121624408e-07!GO:0051301;cell division;1.58437374243667e-07!GO:0009117;nucleotide metabolic process;1.70052534932693e-07!GO:0009719;response to endogenous stimulus;1.77866166001217e-07!GO:0030029;actin filament-based process;1.93539985389417e-07!GO:0019787;small conjugating protein ligase activity;1.95039527266147e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.95237455401626e-07!GO:0050794;regulation of cellular process;2.65529497332166e-07!GO:0004842;ubiquitin-protein ligase activity;2.66480331235324e-07!GO:0006281;DNA repair;2.88127530130322e-07!GO:0000785;chromatin;2.9160364356822e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.40586967008414e-07!GO:0016070;RNA metabolic process;3.47164358175068e-07!GO:0031252;leading edge;3.5200160672355e-07!GO:0031497;chromatin assembly;3.59034049724084e-07!GO:0006099;tricarboxylic acid cycle;4.64135231633099e-07!GO:0046356;acetyl-CoA catabolic process;4.64135231633099e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.94948981651518e-07!GO:0016887;ATPase activity;4.98622571671156e-07!GO:0007010;cytoskeleton organization and biogenesis;5.85330019100067e-07!GO:0044431;Golgi apparatus part;5.96567398720008e-07!GO:0016310;phosphorylation;5.96567398720008e-07!GO:0044440;endosomal part;7.16438292449113e-07!GO:0010008;endosome membrane;7.16438292449113e-07!GO:0006754;ATP biosynthetic process;7.36276527146445e-07!GO:0006753;nucleoside phosphate metabolic process;7.36276527146445e-07!GO:0046930;pore complex;7.60217108547645e-07!GO:0016740;transferase activity;9.69926419784977e-07!GO:0051170;nuclear import;9.69926419784977e-07!GO:0016607;nuclear speck;1.05339848654148e-06!GO:0048518;positive regulation of biological process;1.12645738935769e-06!GO:0005773;vacuole;1.13031974934204e-06!GO:0051187;cofactor catabolic process;1.38876805077959e-06!GO:0000279;M phase;1.55538982331471e-06!GO:0006606;protein import into nucleus;1.59125720517223e-06!GO:0009108;coenzyme biosynthetic process;1.59125720517223e-06!GO:0006950;response to stress;1.61509848874127e-06!GO:0045259;proton-transporting ATP synthase complex;1.69019286173573e-06!GO:0016881;acid-amino acid ligase activity;1.79218310098125e-06!GO:0006084;acetyl-CoA metabolic process;1.85440896533739e-06!GO:0008092;cytoskeletal protein binding;1.87050578739233e-06!GO:0031988;membrane-bound vesicle;2.08523324126622e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.33196995040283e-06!GO:0003714;transcription corepressor activity;2.63893401894678e-06!GO:0009109;coenzyme catabolic process;3.01028219906842e-06!GO:0001558;regulation of cell growth;3.33067795150846e-06!GO:0007243;protein kinase cascade;3.53085658804666e-06!GO:0004298;threonine endopeptidase activity;3.92480854721291e-06!GO:0031324;negative regulation of cellular metabolic process;4.47191293999248e-06!GO:0005525;GTP binding;4.93082100268478e-06!GO:0000323;lytic vacuole;5.02152779755083e-06!GO:0005764;lysosome;5.02152779755083e-06!GO:0003697;single-stranded DNA binding;5.17378918205062e-06!GO:0019899;enzyme binding;5.41956255325261e-06!GO:0005770;late endosome;5.67972638709947e-06!GO:0008361;regulation of cell size;5.72834040063738e-06!GO:0005762;mitochondrial large ribosomal subunit;5.86464865063805e-06!GO:0000315;organellar large ribosomal subunit;5.86464865063805e-06!GO:0016049;cell growth;6.42355494848988e-06!GO:0016564;transcription repressor activity;6.59391632100378e-06!GO:0050789;regulation of biological process;6.85989462016612e-06!GO:0016779;nucleotidyltransferase activity;6.87052896285722e-06!GO:0043623;cellular protein complex assembly;7.24217362116066e-06!GO:0031982;vesicle;7.89235042736837e-06!GO:0008026;ATP-dependent helicase activity;8.02059653137396e-06!GO:0016853;isomerase activity;9.31027400806009e-06!GO:0048468;cell development;1.08933207710356e-05!GO:0050657;nucleic acid transport;1.09906675253766e-05!GO:0051236;establishment of RNA localization;1.09906675253766e-05!GO:0050658;RNA transport;1.09906675253766e-05!GO:0006403;RNA localization;1.12715288972989e-05!GO:0031410;cytoplasmic vesicle;1.14045462722728e-05!GO:0005798;Golgi-associated vesicle;1.18624993398954e-05!GO:0045454;cell redox homeostasis;1.20335968606136e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.36164326952934e-05!GO:0006752;group transfer coenzyme metabolic process;1.38987671053217e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42418043938369e-05!GO:0000245;spliceosome assembly;1.43461328735214e-05!GO:0065009;regulation of a molecular function;1.50528506731641e-05!GO:0043566;structure-specific DNA binding;1.57274689422174e-05!GO:0005667;transcription factor complex;1.73416240098538e-05!GO:0004386;helicase activity;1.8596806697703e-05!GO:0006091;generation of precursor metabolites and energy;1.88413482601085e-05!GO:0051325;interphase;1.88934185172733e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.34946911646309e-05!GO:0051329;interphase of mitotic cell cycle;2.57128240894464e-05!GO:0045786;negative regulation of progression through cell cycle;2.5959370107249e-05!GO:0000139;Golgi membrane;2.84515698204582e-05!GO:0031968;organelle outer membrane;2.99926584127766e-05!GO:0009892;negative regulation of metabolic process;3.12868322153489e-05!GO:0032446;protein modification by small protein conjugation;4.30781635134743e-05!GO:0019867;outer membrane;4.4342840639305e-05!GO:0032561;guanyl ribonucleotide binding;4.46002844928403e-05!GO:0019001;guanyl nucleotide binding;4.46002844928403e-05!GO:0016787;hydrolase activity;4.46280130539982e-05!GO:0003899;DNA-directed RNA polymerase activity;4.47144167967844e-05!GO:0030867;rough endoplasmic reticulum membrane;4.82193019559033e-05!GO:0016563;transcription activator activity;4.82193019559033e-05!GO:0016567;protein ubiquitination;5.07601288557163e-05!GO:0008654;phospholipid biosynthetic process;5.74872896403053e-05!GO:0015630;microtubule cytoskeleton;5.80014003159267e-05!GO:0005905;coated pit;6.00615108488359e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.34063042572523e-05!GO:0005741;mitochondrial outer membrane;6.9410697424062e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.47522870549578e-05!GO:0006613;cotranslational protein targeting to membrane;7.99493627703311e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.98484071115075e-05!GO:0051789;response to protein stimulus;9.58036776714662e-05!GO:0006986;response to unfolded protein;9.58036776714662e-05!GO:0016568;chromatin modification;9.80452569596323e-05!GO:0016044;membrane organization and biogenesis;0.000100532248174387!GO:0033116;ER-Golgi intermediate compartment membrane;0.000108914258070143!GO:0043065;positive regulation of apoptosis;0.000115059013146176!GO:0003713;transcription coactivator activity;0.000128464214041326!GO:0000314;organellar small ribosomal subunit;0.000135019827842107!GO:0005763;mitochondrial small ribosomal subunit;0.000135019827842107!GO:0016859;cis-trans isomerase activity;0.000148329618044025!GO:0043068;positive regulation of programmed cell death;0.000149723619990959!GO:0006839;mitochondrial transport;0.000154558536655066!GO:0003724;RNA helicase activity;0.000159301553721489!GO:0000786;nucleosome;0.000169006254614314!GO:0008283;cell proliferation;0.000176233225847888!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188434585151398!GO:0042802;identical protein binding;0.000188434585151398!GO:0005769;early endosome;0.000199835637293945!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000215571227799854!GO:0044262;cellular carbohydrate metabolic process;0.00022231990518897!GO:0008047;enzyme activator activity;0.00022233742438865!GO:0051028;mRNA transport;0.00023177904195723!GO:0005791;rough endoplasmic reticulum;0.000238573821376272!GO:0009967;positive regulation of signal transduction;0.000240794643027755!GO:0005048;signal sequence binding;0.000244177010851512!GO:0008632;apoptotic program;0.000245261403956024!GO:0000151;ubiquitin ligase complex;0.000258664565994981!GO:0005885;Arp2/3 protein complex;0.000276127727853045!GO:0030133;transport vesicle;0.000288411467093526!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000297515367739828!GO:0043681;protein import into mitochondrion;0.000315791133652696!GO:0005819;spindle;0.000373723602700048!GO:0009165;nucleotide biosynthetic process;0.000395847194853365!GO:0040008;regulation of growth;0.000411588708332772!GO:0005813;centrosome;0.000464279077397873!GO:0033673;negative regulation of kinase activity;0.00047445796324877!GO:0006469;negative regulation of protein kinase activity;0.00047445796324877!GO:0007264;small GTPase mediated signal transduction;0.000479496201996702!GO:0006626;protein targeting to mitochondrion;0.000483523844712704!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000492540892660064!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000531269449688653!GO:0043021;ribonucleoprotein binding;0.000599702235876839!GO:0016481;negative regulation of transcription;0.000601872410738327!GO:0008250;oligosaccharyl transferase complex;0.000668850168183409!GO:0051427;hormone receptor binding;0.000671400351776828!GO:0007006;mitochondrial membrane organization and biogenesis;0.000675540208335549!GO:0051348;negative regulation of transferase activity;0.000686036629993068!GO:0006414;translational elongation;0.000690400366231891!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000803142040915246!GO:0019843;rRNA binding;0.000803142040915246!GO:0003779;actin binding;0.000844243632095723!GO:0046474;glycerophospholipid biosynthetic process;0.000875750147548921!GO:0006612;protein targeting to membrane;0.000929751630977032!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000932928350386543!GO:0051920;peroxiredoxin activity;0.000941223667901547!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000950188534854661!GO:0030176;integral to endoplasmic reticulum membrane;0.00102518694831872!GO:0004576;oligosaccharyl transferase activity;0.00104443682827271!GO:0030880;RNA polymerase complex;0.0010980641653778!GO:0005096;GTPase activator activity;0.00111973169459154!GO:0043284;biopolymer biosynthetic process;0.00113572043726886!GO:0006417;regulation of translation;0.00121930286143387!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122446637345823!GO:0030658;transport vesicle membrane;0.0012280120608244!GO:0050790;regulation of catalytic activity;0.00125568909918837!GO:0030663;COPI coated vesicle membrane;0.00125568909918837!GO:0030126;COPI vesicle coat;0.00125568909918837!GO:0016126;sterol biosynthetic process;0.00129055801972884!GO:0035257;nuclear hormone receptor binding;0.00131251013734654!GO:0006082;organic acid metabolic process;0.00143416377089267!GO:0048471;perinuclear region of cytoplasm;0.00144396765068864!GO:0030118;clathrin coat;0.00154766643852249!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00156668993744142!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00156668993744142!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00156668993744142!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0015880128102141!GO:0019752;carboxylic acid metabolic process;0.0015880128102141!GO:0008610;lipid biosynthetic process;0.00162605724013016!GO:0005815;microtubule organizing center;0.00162641780125547!GO:0008186;RNA-dependent ATPase activity;0.00163257914376726!GO:0001726;ruffle;0.00172855717315296!GO:0007242;intracellular signaling cascade;0.00178617033693817!GO:0018196;peptidyl-asparagine modification;0.00187984258769989!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00187984258769989!GO:0000059;protein import into nucleus, docking;0.00189067724042282!GO:0043488;regulation of mRNA stability;0.00189440021516322!GO:0043487;regulation of RNA stability;0.00189440021516322!GO:0030132;clathrin coat of coated pit;0.00190494534152271!GO:0006979;response to oxidative stress;0.00201436646153527!GO:0030027;lamellipodium;0.00204564036838453!GO:0051252;regulation of RNA metabolic process;0.00216967306484273!GO:0006917;induction of apoptosis;0.00243331436053829!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00245565068526919!GO:0008033;tRNA processing;0.00259370150338224!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00259912445240476!GO:0000428;DNA-directed RNA polymerase complex;0.00259912445240476!GO:0048487;beta-tubulin binding;0.00259975019156599!GO:0051087;chaperone binding;0.00272296306626834!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00276030782388099!GO:0006261;DNA-dependent DNA replication;0.00282493039426772!GO:0065007;biological regulation;0.00282493039426772!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00300737800370694!GO:0030137;COPI-coated vesicle;0.00302698030290596!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00307595949895765!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00307595949895765!GO:0006520;amino acid metabolic process;0.00311934711505277!GO:0007050;cell cycle arrest;0.00316696094987959!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00321715016672325!GO:0008637;apoptotic mitochondrial changes;0.00324976998414739!GO:0005684;U2-dependent spliceosome;0.00334956490551598!GO:0030660;Golgi-associated vesicle membrane;0.00342496449679609!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00342496449679609!GO:0012502;induction of programmed cell death;0.00347903368737806!GO:0045941;positive regulation of transcription;0.00375790739144416!GO:0031902;late endosome membrane;0.00383528052278449!GO:0005774;vacuolar membrane;0.00387657936358899!GO:0006401;RNA catabolic process;0.00389706323597753!GO:0051168;nuclear export;0.0040670613415628!GO:0004004;ATP-dependent RNA helicase activity;0.00407007306211752!GO:0017166;vinculin binding;0.00408311812354984!GO:0000082;G1/S transition of mitotic cell cycle;0.0041382347170952!GO:0044452;nucleolar part;0.00421082667344846!GO:0018193;peptidyl-amino acid modification;0.00447965979870574!GO:0008139;nuclear localization sequence binding;0.00452697296803258!GO:0006007;glucose catabolic process;0.00454168308430588!GO:0008243;plasminogen activator activity;0.00474183063311007!GO:0007051;spindle organization and biogenesis;0.00477768595655495!GO:0015992;proton transport;0.00481737621452351!GO:0009889;regulation of biosynthetic process;0.00486012737786102!GO:0030134;ER to Golgi transport vesicle;0.00489531615184344!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00500955348029464!GO:0008180;signalosome;0.00507856333666984!GO:0005657;replication fork;0.0051920932088623!GO:0006891;intra-Golgi vesicle-mediated transport;0.00538249069133254!GO:0006818;hydrogen transport;0.0056788473611822!GO:0009966;regulation of signal transduction;0.00568394970261489!GO:0016197;endosome transport;0.00571526201072541!GO:0045792;negative regulation of cell size;0.00581565691135513!GO:0031072;heat shock protein binding;0.0058402460583118!GO:0006695;cholesterol biosynthetic process;0.00586705938874778!GO:0046467;membrane lipid biosynthetic process;0.00589517682545277!GO:0030119;AP-type membrane coat adaptor complex;0.00618510565302004!GO:0030127;COPII vesicle coat;0.00620555237944489!GO:0012507;ER to Golgi transport vesicle membrane;0.00620555237944489!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00626328424613341!GO:0015002;heme-copper terminal oxidase activity;0.00626328424613341!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00626328424613341!GO:0004129;cytochrome-c oxidase activity;0.00626328424613341!GO:0045045;secretory pathway;0.00629529277125191!GO:0043433;negative regulation of transcription factor activity;0.00632567835690379!GO:0030308;negative regulation of cell growth;0.00651322289266496!GO:0031326;regulation of cellular biosynthetic process;0.00656594315307372!GO:0015631;tubulin binding;0.00661915311019903!GO:0006595;polyamine metabolic process;0.00669068128554514!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00736311921117631!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00744829006868019!GO:0051338;regulation of transferase activity;0.0076600333514965!GO:0051128;regulation of cellular component organization and biogenesis;0.00788851048410802!GO:0006402;mRNA catabolic process;0.00808654867250436!GO:0005765;lysosomal membrane;0.00831596323801903!GO:0030125;clathrin vesicle coat;0.00831596323801903!GO:0030665;clathrin coated vesicle membrane;0.00831596323801903!GO:0046489;phosphoinositide biosynthetic process;0.00835779697434644!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00847501125245868!GO:0015399;primary active transmembrane transporter activity;0.00847501125245868!GO:0030041;actin filament polymerization;0.00851612725203353!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00883111463630419!GO:0005869;dynactin complex;0.00887536096895213!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00903838927270874!GO:0006740;NADPH regeneration;0.00940179497215212!GO:0006098;pentose-phosphate shunt;0.00940179497215212!GO:0045936;negative regulation of phosphate metabolic process;0.00946972640181525!GO:0007088;regulation of mitosis;0.00950629666079233!GO:0005862;muscle thin filament tropomyosin;0.00950629666079233!GO:0048500;signal recognition particle;0.00960263405088877!GO:0046483;heterocycle metabolic process;0.00989744688384882!GO:0043086;negative regulation of catalytic activity;0.0100034217834073!GO:0016363;nuclear matrix;0.0101741371612536!GO:0051098;regulation of binding;0.0103137356338911!GO:0000049;tRNA binding;0.010336156369324!GO:0043549;regulation of kinase activity;0.0103545544785102!GO:0004177;aminopeptidase activity;0.0103545544785102!GO:0030131;clathrin adaptor complex;0.010472732767473!GO:0022890;inorganic cation transmembrane transporter activity;0.0105280392987212!GO:0003729;mRNA binding;0.0106185188091386!GO:0006807;nitrogen compound metabolic process;0.0108182910992409!GO:0007265;Ras protein signal transduction;0.0110489607203717!GO:0046426;negative regulation of JAK-STAT cascade;0.0112301224751834!GO:0045893;positive regulation of transcription, DNA-dependent;0.0112301224751834!GO:0044437;vacuolar part;0.0112639640073126!GO:0003746;translation elongation factor activity;0.0113943697434837!GO:0006650;glycerophospholipid metabolic process;0.0113943697434837!GO:0000075;cell cycle checkpoint;0.0116973676431942!GO:0003684;damaged DNA binding;0.0121712394529294!GO:0006383;transcription from RNA polymerase III promoter;0.0127613430266842!GO:0030659;cytoplasmic vesicle membrane;0.0127828169876416!GO:0005832;chaperonin-containing T-complex;0.0127828169876416!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130521682428524!GO:0050662;coenzyme binding;0.0134242580455723!GO:0031543;peptidyl-proline dioxygenase activity;0.0134520617289049!GO:0007034;vacuolar transport;0.0135270497253933!GO:0005100;Rho GTPase activator activity;0.013555941867374!GO:0043022;ribosome binding;0.0136852232584845!GO:0008154;actin polymerization and/or depolymerization;0.0136968092572508!GO:0016272;prefoldin complex;0.013741421167828!GO:0006897;endocytosis;0.0138266888356032!GO:0010324;membrane invagination;0.0138266888356032!GO:0006509;membrane protein ectodomain proteolysis;0.0138820701121685!GO:0033619;membrane protein proteolysis;0.0138820701121685!GO:0051101;regulation of DNA binding;0.0141883447810876!GO:0016860;intramolecular oxidoreductase activity;0.014614694611474!GO:0005637;nuclear inner membrane;0.0150161948277153!GO:0008094;DNA-dependent ATPase activity;0.0150397920869771!GO:0033239;negative regulation of amine metabolic process;0.0150397920869771!GO:0045763;negative regulation of amino acid metabolic process;0.0150397920869771!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0150397920869771!GO:0022415;viral reproductive process;0.01522915877867!GO:0003711;transcription elongation regulator activity;0.01522915877867!GO:0051287;NAD binding;0.0165191560997579!GO:0001516;prostaglandin biosynthetic process;0.0165191560997579!GO:0046457;prostanoid biosynthetic process;0.0165191560997579!GO:0045859;regulation of protein kinase activity;0.0165854254135348!GO:0046822;regulation of nucleocytoplasmic transport;0.0166551915923228!GO:0031418;L-ascorbic acid binding;0.0171178618039833!GO:0000775;chromosome, pericentric region;0.0172224236627807!GO:0007040;lysosome organization and biogenesis;0.0174707334209761!GO:0019206;nucleoside kinase activity;0.0175071750656235!GO:0019318;hexose metabolic process;0.0175480103294776!GO:0006778;porphyrin metabolic process;0.0176324195635193!GO:0033013;tetrapyrrole metabolic process;0.0176324195635193!GO:0031529;ruffle organization and biogenesis;0.0186375100785236!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0198622358535013!GO:0008312;7S RNA binding;0.0200553264244998!GO:0051235;maintenance of localization;0.0203724829204038!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0205534269403758!GO:0007021;tubulin folding;0.0205661456795476!GO:0032940;secretion by cell;0.0205680350515254!GO:0051539;4 iron, 4 sulfur cluster binding;0.0207592612745882!GO:0007033;vacuole organization and biogenesis;0.020770139639368!GO:0006289;nucleotide-excision repair;0.0211117276300828!GO:0008538;proteasome activator activity;0.0212258172667132!GO:0001836;release of cytochrome c from mitochondria;0.0213295839268559!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0213300366988373!GO:0045047;protein targeting to ER;0.0213300366988373!GO:0019798;procollagen-proline dioxygenase activity;0.0220083243798509!GO:0005874;microtubule;0.0221895236766057!GO:0051540;metal cluster binding;0.0221895236766057!GO:0051536;iron-sulfur cluster binding;0.0221895236766057!GO:0042326;negative regulation of phosphorylation;0.0226756905657436!GO:0044433;cytoplasmic vesicle part;0.0227002274507099!GO:0005996;monosaccharide metabolic process;0.0229559942325385!GO:0005856;cytoskeleton;0.0230469927973589!GO:0006984;ER-nuclear signaling pathway;0.0231664478630885!GO:0009308;amine metabolic process;0.0231852511424076!GO:0008286;insulin receptor signaling pathway;0.02356035259237!GO:0046519;sphingoid metabolic process;0.0240338357573593!GO:0030521;androgen receptor signaling pathway;0.0240846426034858!GO:0006497;protein amino acid lipidation;0.024252143199892!GO:0035258;steroid hormone receptor binding;0.0243185842515342!GO:0003678;DNA helicase activity;0.0243185842515342!GO:0008022;protein C-terminus binding;0.0244523571822707!GO:0006118;electron transport;0.0245831651285776!GO:0030695;GTPase regulator activity;0.0247446938462906!GO:0031901;early endosome membrane;0.0249458445276139!GO:0031301;integral to organelle membrane;0.0249458445276139!GO:0006733;oxidoreduction coenzyme metabolic process;0.0252363720375083!GO:0032508;DNA duplex unwinding;0.0252539680585361!GO:0032392;DNA geometric change;0.0252539680585361!GO:0016301;kinase activity;0.0254791701386105!GO:0006519;amino acid and derivative metabolic process;0.0255377651098742!GO:0016584;nucleosome positioning;0.0258674329954768!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.026435157960526!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0266966031600467!GO:0003690;double-stranded DNA binding;0.0268135211205206!GO:0005092;GDP-dissociation inhibitor activity;0.0277253240109696!GO:0009893;positive regulation of metabolic process;0.0280322496053665!GO:0004674;protein serine/threonine kinase activity;0.0282249030771582!GO:0004722;protein serine/threonine phosphatase activity;0.0283537934913581!GO:0035035;histone acetyltransferase binding;0.0288708353470537!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0290335215747039!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0290335215747039!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0290335215747039!GO:0015036;disulfide oxidoreductase activity;0.0291115748761937!GO:0031124;mRNA 3'-end processing;0.0293199754983224!GO:0045926;negative regulation of growth;0.0293454428340117!GO:0030032;lamellipodium biogenesis;0.029893630640705!GO:0003756;protein disulfide isomerase activity;0.0299411827344762!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0299411827344762!GO:0048144;fibroblast proliferation;0.0299411827344762!GO:0048145;regulation of fibroblast proliferation;0.0299411827344762!GO:0006739;NADP metabolic process;0.0309911826621157!GO:0040029;regulation of gene expression, epigenetic;0.0312934983556507!GO:0047485;protein N-terminus binding;0.0313331216298991!GO:0042158;lipoprotein biosynthetic process;0.0313991019611846!GO:0043414;biopolymer methylation;0.0314795042246477!GO:0000030;mannosyltransferase activity;0.0319094838346427!GO:0009112;nucleobase metabolic process;0.0320358644126113!GO:0007041;lysosomal transport;0.03266389891167!GO:0016791;phosphoric monoester hydrolase activity;0.0330219807304244!GO:0006611;protein export from nucleus;0.0332373866492665!GO:0012506;vesicle membrane;0.0333627295206751!GO:0016408;C-acyltransferase activity;0.0336631175149186!GO:0051059;NF-kappaB binding;0.0336631175149186!GO:0009116;nucleoside metabolic process;0.0336825138761382!GO:0009124;nucleoside monophosphate biosynthetic process;0.034146090148172!GO:0009123;nucleoside monophosphate metabolic process;0.034146090148172!GO:0006376;mRNA splice site selection;0.034345130531785!GO:0000389;nuclear mRNA 3'-splice site recognition;0.034345130531785!GO:0006607;NLS-bearing substrate import into nucleus;0.0347280728797244!GO:0051336;regulation of hydrolase activity;0.0348326269671475!GO:0043281;regulation of caspase activity;0.0348412817194329!GO:0000339;RNA cap binding;0.0349678686720279!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0349801399925749!GO:0001666;response to hypoxia;0.0352138665246365!GO:0043189;H4/H2A histone acetyltransferase complex;0.0352138665246365!GO:0000209;protein polyubiquitination;0.0352138665246365!GO:0006643;membrane lipid metabolic process;0.0356101572377262!GO:0042168;heme metabolic process;0.0356450749702428!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0356450749702428!GO:0010257;NADH dehydrogenase complex assembly;0.0356450749702428!GO:0033108;mitochondrial respiratory chain complex assembly;0.0356450749702428!GO:0046365;monosaccharide catabolic process;0.0361267797981371!GO:0043492;ATPase activity, coupled to movement of substances;0.0369141783205526!GO:0007569;cell aging;0.037388992986574!GO:0005099;Ras GTPase activator activity;0.0380281879292801!GO:0006096;glycolysis;0.0386569951325681!GO:0006354;RNA elongation;0.0387746960383406!GO:0005925;focal adhesion;0.0393704826703522!GO:0000178;exosome (RNase complex);0.0393917185331068!GO:0006352;transcription initiation;0.0411991463604676!GO:0030508;thiol-disulfide exchange intermediate activity;0.0412456373382447!GO:0005912;adherens junction;0.0415931520652229!GO:0050178;phenylpyruvate tautomerase activity;0.0421993504022878!GO:0030496;midbody;0.0422174395329754!GO:0031625;ubiquitin protein ligase binding;0.0422179513691517!GO:0006672;ceramide metabolic process;0.0423800859611031!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0425999868134819!GO:0006779;porphyrin biosynthetic process;0.0432586080564272!GO:0033014;tetrapyrrole biosynthetic process;0.0432586080564272!GO:0006268;DNA unwinding during replication;0.0433334802060553!GO:0030911;TPR domain binding;0.0437273521248762!GO:0006633;fatty acid biosynthetic process;0.0437472515190506!GO:0006220;pyrimidine nucleotide metabolic process;0.0442741060087771!GO:0009303;rRNA transcription;0.0443265037208555!GO:0048146;positive regulation of fibroblast proliferation;0.0443575919330182!GO:0030384;phosphoinositide metabolic process;0.044768851090848!GO:0008287;protein serine/threonine phosphatase complex;0.044768851090848!GO:0051090;regulation of transcription factor activity;0.0448505307455977!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0448505307455977!GO:0033043;regulation of organelle organization and biogenesis;0.0448505307455977!GO:0030433;ER-associated protein catabolic process;0.0448505307455977!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0448505307455977!GO:0004527;exonuclease activity;0.0451323114921883!GO:0008601;protein phosphatase type 2A regulator activity;0.0452128895488216!GO:0009166;nucleotide catabolic process;0.0452788188825676!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455596330475159!GO:0005784;translocon complex;0.0460604398531618!GO:0043130;ubiquitin binding;0.0461142658064402!GO:0032182;small conjugating protein binding;0.0461142658064402!GO:0016311;dephosphorylation;0.046190208791268!GO:0006405;RNA export from nucleus;0.0463207575550233!GO:0005083;small GTPase regulator activity;0.0469072763337096!GO:0033559;unsaturated fatty acid metabolic process;0.0470004296972994!GO:0006636;unsaturated fatty acid biosynthetic process;0.0470004296972994!GO:0006458;'de novo' protein folding;0.0470004296972994!GO:0051084;'de novo' posttranslational protein folding;0.0470004296972994!GO:0050811;GABA receptor binding;0.047096681892831!GO:0031371;ubiquitin conjugating enzyme complex;0.0476148731657862!GO:0000123;histone acetyltransferase complex;0.0476665985433057!GO:0035267;NuA4 histone acetyltransferase complex;0.0481860420491084!GO:0043154;negative regulation of caspase activity;0.0484540043393268!GO:0007162;negative regulation of cell adhesion;0.0488111410305363!GO:0045334;clathrin-coated endocytic vesicle;0.0488111410305363!GO:0001725;stress fiber;0.0499654453262245!GO:0032432;actin filament bundle;0.0499654453262245!GO:0004448;isocitrate dehydrogenase activity;0.0499654453262245!GO:0030100;regulation of endocytosis;0.049966125972451
|sample_id=11367
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=umbilical artery
|top_motifs=SRF:1.80424435541;TBP:1.70134899972;GLI1..3:1.37924144992;ALX4:1.26735356358;NFE2L1:1.2594060789;GTF2A1,2:1.24509752442;GCM1,2:1.20243700689;EBF1:1.02088660905;TFAP4:0.995305656332;EN1,2:0.963529625051;TFCP2:0.925371963712;HES1:0.867717253069;NR3C1:0.861259990363;PAX1,9:0.820251763863;IKZF1:0.736985495452;ZBTB6:0.736798390498;ESR1:0.713352366311;TLX1..3_NFIC{dimer}:0.712265779772;ZNF148:0.697308925236;TFAP2{A,C}:0.678233070587;TEAD1:0.654467284013;XCPE1{core}:0.6540921016;UFEwm:0.644924255781;HIF1A:0.639541748142;NR5A1,2:0.588395928063;RXRA_VDR{dimer}:0.559651652367;ZNF238:0.539162776733;PPARG:0.516985729736;HSF1,2:0.505727541937;HMX1:0.500887779116;POU1F1:0.500114897276;GZF1:0.468626250802;BACH2:0.463630120468;POU6F1:0.441612674746;POU2F1..3:0.429937397323;HAND1,2:0.424528268099;ATF6:0.423183561303;FOXL1:0.416933540771;ZIC1..3:0.398937574289;NFE2L2:0.392211108524;SOX{8,9,10}:0.389564600166;KLF4:0.383795400302;ONECUT1,2:0.372226884898;TP53:0.370882765665;NANOG{mouse}:0.360529647698;FOSL2:0.353756301353;JUN:0.35208834113;SMAD1..7,9:0.351357856719;FOS_FOS{B,L1}_JUN{B,D}:0.33591754903;ZNF423:0.33580513876;XBP1:0.317825565793;RUNX1..3:0.315537367904;PAX8:0.308302141466;MAFB:0.304955593144;MTE{core}:0.300865396562;RXR{A,B,G}:0.299761580456;PAX5:0.296895541078;HOX{A5,B5}:0.282682856237;TBX4,5:0.281647911083;POU5F1:0.279809832024;TLX2:0.258792157061;SOX17:0.247628199035;GFI1B:0.243914195048;ETS1,2:0.242593581809;AR:0.238138970663;NFKB1_REL_RELA:0.238107588565;STAT2,4,6:0.230876730634;NFE2:0.230831479851;PBX1:0.229331245264;ELF1,2,4:0.197088736938;HIC1:0.19407853793;NR6A1:0.167239563873;POU3F1..4:0.160674418642;MYBL2:0.160375006885;STAT5{A,B}:0.135253341874;NFATC1..3:0.120209555762;PATZ1:0.116530033007;SP1:0.109159871235;FOX{I1,J2}:0.109002488707;REST:0.108524687751;TFDP1:0.104419824254;GTF2I:0.0970106769945;TFAP2B:0.0884036883932;MYB:0.0859619056135;SPZ1:0.0792571464175;GFI1:0.0725376764176;HLF:0.0687555569985;SPIB:0.0649160535711;YY1:0.0630000346107;MTF1:0.0593039019014;MAZ:0.0535270543658;E2F1..5:0.0304792547279;SOX2:0.0264896481977;DMAP1_NCOR{1,2}_SMARC:0.0192287237148;LEF1_TCF7_TCF7L1,2:-0.00362373592761;NFY{A,B,C}:-0.00840348625094;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0210569578649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0232211688397;NKX2-2,8:-0.0234726325175;LHX3,4:-0.0261269175906;ELK1,4_GABP{A,B1}:-0.051901766156;CDC5L:-0.0524904353966;SPI1:-0.0547146617493;EP300:-0.0606551086015;ZNF384:-0.0621154987179;HNF1A:-0.0659167708998;TOPORS:-0.0698987590403;MEF2{A,B,C,D}:-0.0829945673628;PAX2:-0.112908246715;bHLH_family:-0.127285246889;GATA4:-0.137655997301;NKX3-2:-0.143891216602;HNF4A_NR2F1,2:-0.14640957466;PITX1..3:-0.151867582969;MYOD1:-0.156916043222;RREB1:-0.187891350134;HMGA1,2:-0.193886764323;VSX1,2:-0.19698593631;ZNF143:-0.198599392383;EGR1..3:-0.203366271262;MZF1:-0.22524989168;ADNP_IRX_SIX_ZHX:-0.226936163889;LMO2:-0.227842263597;PRDM1:-0.233059944379;NHLH1,2:-0.238689553047;TAL1_TCF{3,4,12}:-0.250456285649;MYFfamily:-0.272878022842;GATA6:-0.277288587923;ATF5_CREB3:-0.303175351624;NFIL3:-0.30855326668;CEBPA,B_DDIT3:-0.315685817506;IRF1,2:-0.369340860098;CRX:-0.373963866574;NRF1:-0.39785331052;RFX1:-0.40566688412;HBP1_HMGB_SSRP1_UBTF:-0.409180552853;ATF2:-0.412194313855;EVI1:-0.430047436115;FOXM1:-0.433657840733;ESRRA:-0.438356039883;ZFP161:-0.444517043426;SNAI1..3:-0.485099554423;MED-1{core}:-0.500690311345;CREB1:-0.509058263389;OCT4_SOX2{dimer}:-0.517589996076;NANOG:-0.52894715692;NKX3-1:-0.535342857198;AHR_ARNT_ARNT2:-0.54995446111;NKX2-3_NKX2-5:-0.566872042696;PAX3,7:-0.584551566364;T:-0.588765963853;IKZF2:-0.591502107037;IRF7:-0.594966407938;ZEB1:-0.596801876979;NKX2-1,4:-0.598550880312;PAX4:-0.609795331137;ALX1:-0.625754687729;FOX{F1,F2,J1}:-0.638780426536;RFX2..5_RFXANK_RFXAP:-0.671469172735;NFIX:-0.716363047499;BREu{core}:-0.723591760077;ARID5B:-0.757328541428;HOX{A6,A7,B6,B7}:-0.783788913494;FOX{D1,D2}:-0.793816425227;PRRX1,2:-0.80733930142;NR1H4:-0.819116142783;TGIF1:-0.82986595119;FOXP3:-0.832946121907;HOX{A4,D4}:-0.853419418833;CDX1,2,4:-0.888274499397;ATF4:-0.897738549795;DBP:-0.898365478079;TEF:-0.91862388854;SOX5:-0.93937590571;FOXP1:-0.990425404153;CUX2:-0.99886226324;SREBF1,2:-1.00058995592;FOXO1,3,4:-1.00803412005;PAX6:-1.03580966845;FOXA2:-1.03748760105;HOXA9_MEIS1:-1.05084385572;AIRE:-1.0735446519;STAT1,3:-1.11414934235;ZBTB16:-1.12492446361;RORA:-1.13560239867;FOXD3:-1.2074212344;FOXQ1:-1.22006905967;FOXN1:-1.28360555922;BPTF:-1.39250915254;PDX1:-1.40301606045;NKX6-1,2:-1.53873545344;RBPJ:-1.63533918119
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11367-117I8;search_select_hide=table117:FF:11367-117I8
}}
}}

Latest revision as of 17:55, 4 June 2020

Name:Smooth Muscle Cells - Umbilical Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11991
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical artery
dev stageinfant
sexfemale
ageneonatal
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1438
catalog numberCA252-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005759
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11991 CAGE DRX008508 DRR009380
Accession ID Hg19

Library idBAMCTSS
CNhs11991 DRZ000805 DRZ002190
Accession ID Hg38

Library idBAMCTSS
CNhs11991 DRZ012155 DRZ013540
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005759
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.GGTAGC sRNA-Seq DRX037032 DRR041398
Accession ID Hg19

Library idBAMCTSS
SRhi10003.GGTAGC DRZ007040


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.117
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.613
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.261
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.174
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.117
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.285
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.497
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.709
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0213
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.635
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.033
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0166
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.117
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0394
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.101
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.249
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.117
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.117
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.456
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0807
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.117
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.117
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.607
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.797
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0.117
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0684
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.35
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.285
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11991

Jaspar motifP-value
MA0002.20.152
MA0003.10.291
MA0004.10.265
MA0006.10.0864
MA0007.10.218
MA0009.10.505
MA0014.10.896
MA0017.10.397
MA0018.20.00885
MA0019.10.171
MA0024.10.209
MA0025.10.381
MA0027.10.864
MA0028.10.498
MA0029.10.33
MA0030.10.175
MA0031.10.00457
MA0035.20.712
MA0038.10.459
MA0039.20.742
MA0040.10.756
MA0041.10.562
MA0042.10.869
MA0043.10.0218
MA0046.10.92
MA0047.20.304
MA0048.10.0721
MA0050.10.00168
MA0051.10.0528
MA0052.10.786
MA0055.10.232
MA0057.10.122
MA0058.10.0561
MA0059.10.775
MA0060.10.53
MA0061.10.109
MA0062.20.366
MA0065.20.168
MA0066.10.313
MA0067.10.0039
MA0068.10.802
MA0069.10.914
MA0070.10.925
MA0071.10.495
MA0072.10.662
MA0073.10.552
MA0074.10.133
MA0076.10.141
MA0077.10.159
MA0078.10.445
MA0079.20.92
MA0080.20.361
MA0081.10.208
MA0083.15.54877e-12
MA0084.10.797
MA0087.10.72
MA0088.10.482
MA0090.10.0237
MA0091.10.452
MA0092.10.0975
MA0093.10.202
MA0099.27.45947e-9
MA0100.10.144
MA0101.10.0932
MA0102.20.0961
MA0103.10.12
MA0104.20.165
MA0105.10.18
MA0106.10.285
MA0107.10.0538
MA0108.23.47534e-17
MA0111.10.224
MA0112.20.0426
MA0113.10.649
MA0114.10.706
MA0115.10.225
MA0116.10.189
MA0117.10.835
MA0119.10.17
MA0122.10.618
MA0124.10.795
MA0125.10.356
MA0131.10.925
MA0135.10.269
MA0136.10.497
MA0137.20.327
MA0138.20.291
MA0139.10.853
MA0140.10.426
MA0141.10.601
MA0142.10.717
MA0143.10.185
MA0144.10.266
MA0145.10.116
MA0146.10.305
MA0147.10.36
MA0148.10.44
MA0149.10.885
MA0150.10.323
MA0152.10.989
MA0153.10.987
MA0154.10.21
MA0155.10.0607
MA0156.10.147
MA0157.10.068
MA0159.10.886
MA0160.10.741
MA0162.10.0211
MA0163.10.0545
MA0164.10.85
MA0258.10.318
MA0259.10.471



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11991

Novel motifP-value
10.96
100.738
1000.947
1010.222
1020.954
1030.539
1040.591
1050.438
1060.0532
1070.0199
1080.33
1090.0568
110.112
1100.172
1110.85
1120.343
1130.171
1140.681
1150.164
1160.00392
1170.679
1180.92
1190.18
120.238
1200.242
1210.62
1220.912
1230.0189
1240.247
1250.413
1260.721
1270.191
1280.124
1290.676
130.508
1300.643
1310.278
1320.981
1330.71
1340.272
1350.0248
1360.192
1370.612
1380.408
1390.564
140.377
1400.939
1410.46
1420.082
1430.00123
1440.592
1450.276
1460.249
1470.52
1480.613
1490.0993
150.714
1500.162
1510.776
1520.0316
1530.517
1540.533
1550.219
1560.668
1570.119
1580.0137
1590.247
160.0865
1600.122
1610.177
1620.674
1630.74
1640.304
1650.966
1660.521
1670.199
1680.716
1690.0774
170.173
180.225
190.0383
20.184
200.328
210.65
220.345
230.258
240.704
250.647
260.294
270.533
280.29
290.403
30.475
300.429
310.466
324.96496e-6
330.454
340.151
350.941
360.663
370.0852
380.999
390.365
40.577
400.0658
410.793
420.76
430.343
440.0839
450.476
460.393
470.646
480.335
490.794
50.576
500.68
510.773
520.414
530.242
540.52
550.759
560.572
570.705
580.658
590.0439
60.677
600.477
610.882
620.73
630.301
640.306
650.233
660.847
670.867
680.329
690.69
70.819
700.787
710.422
720.69
730.00617
740.597
750.374
760.154
770.00132
780.689
790.00129
80.0392
800.337
810.565
820.698
830.621
840.717
850.215
860.753
870.00795
880.122
890.207
90.0881
900.101
910.224
920.957
930.696
940.862
950.147
960.863
970.87
980.789
990.00136



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11991


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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