FFCP PHASE1:Hg19::chr1:41898864..41898890,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr1:41898864..41898890,+ | |||
|description=CAGE_peak_at_chr1:41898864..41898890,+ | |||
|id=chr1:41898864..41898890,+ | |||
|ontology_enrichment_celltype=CL:0000128!2.73e-08!7;CL:0000126!2.73e-08!7;CL:0000127!2.73e-08!7;CL:0002453!2.73e-08!7;CL:0000243!7.27e-08!15;CL:0000125!7.27e-08!15;CL:0000030!7.27e-08!15;CL:0000339!7.27e-08!15;CL:0000095!9.20e-07!17;CL:0000123!9.20e-07!17 | |||
|ontology_enrichment_celltype_v019=CL:0000243;4.92e-12;15!CL:0000125;4.92e-12;15!CL:0000095;1.17e-10;17!CL:0000128;3.19e-10;7!CL:0000126;3.19e-10;7!CL:0000127;3.19e-10;7!CL:0000075;8.41e-09;27!CL:0000197;2.93e-07;6!CL:0000098;2.93e-07;6!CL:0002167;2.93e-07;6!CL:0000710;3.38e-07;20!CL:0002319;3.39e-07;25!CL:0002603;7.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,5.23e-12,15;CL:0000125,5.23e-12,15;CL:0000030,5.23e-12,15;CL:0000339,5.23e-12,15;CL:0000133,6.20e-11,59;CL:0000095,1.24e-10,17;CL:0000123,1.24e-10,17;CL:0000128,3.39e-10,7;CL:0000126,3.39e-10,7;CL:0000127,3.39e-10,7;CL:0002453,3.39e-10,7;CL:0000075,8.37e-09,27;CL:0000221,1.78e-08,72;CL:0000197,2.99e-07,6;CL:0000098,2.99e-07,6;CL:0002167,2.99e-07,6;CL:0000710,3.49e-07,20;CL:0002319,3.52e-07,25;CL:0002603,6.91e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000339;4.92e-12;15!UBERON:0006241;5.16e-07;3!UBERON:0003057;5.16e-07;3!UBERON:0006238;6.98e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!8.74e-19!86;UBERON:0007284!8.74e-19!86;UBERON:0002346!1.57e-18!90;UBERON:0005743!1.80e-18!86;UBERON:0000073!1.02e-17!94;UBERON:0001016!1.02e-17!94;UBERON:0001049!1.77e-16!57;UBERON:0005068!1.77e-16!57;UBERON:0006241!1.77e-16!57;UBERON:0007135!1.77e-16!57;UBERON:0000955!2.74e-16!69;UBERON:0006238!2.74e-16!69;UBERON:0000033!1.32e-15!123;UBERON:0001017!3.05e-15!82;UBERON:0000153!5.48e-15!129;UBERON:0007811!5.48e-15!129;UBERON:0000924!3.44e-14!173;UBERON:0006601!3.44e-14!173;UBERON:0004121!3.90e-14!169;UBERON:0002616!4.79e-14!59;UBERON:0003056!7.45e-12!61;UBERON:0003076!1.03e-11!15;UBERON:0003057!1.03e-11!15;UBERON:0000025!1.61e-10!194;UBERON:0004733!5.27e-10!12;UBERON:0002028!5.27e-10!12;UBERON:0007277!5.27e-10!12;UBERON:0002298!7.39e-10!8;UBERON:0004732!4.76e-09!13;UBERON:0002020!7.90e-09!34;UBERON:0003528!7.90e-09!34;UBERON:0004111!1.32e-08!241;UBERON:0001893!1.73e-08!34;UBERON:0002780!1.97e-08!41;UBERON:0001890!1.97e-08!41;UBERON:0006240!1.97e-08!41;UBERON:0000483!2.42e-08!309;UBERON:0000475!2.91e-08!365;UBERON:0003080!4.13e-08!42;UBERON:0000119!4.40e-08!312;UBERON:0007625!4.51e-08!11;UBERON:0000477!4.91e-08!286;UBERON:0002791!7.95e-08!33;UBERON:0002308!2.21e-07!9;UBERON:0000125!2.21e-07!9;UBERON:0001869!7.20e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;1.15e-24;6!UBERON:0004733;1.88e-21;12!UBERON:0002028;1.88e-21;12!UBERON:0004732;1.05e-19;13!UBERON:0001896;3.07e-13;3!UBERON:0005290;3.07e-13;3!UBERON:0000988;3.48e-13;3!UBERON:0002680;9.74e-12;9!UBERON:0001895;9.74e-12;9!UBERON:0002148;1.57e-09;2!UBERON:0006331;1.57e-09;2!UBERON:0009662;1.57e-09;2!UBERON:0001897;1.99e-09;2!UBERON:0010225;1.99e-09;2!UBERON:0007625;2.01e-09;11!UBERON:0000125;7.18e-08;9!UBERON:0002308;7.18e-08;9!UBERON:0000019;1.85e-07;19!UBERON:0000047;1.85e-07;19!UBERON:0004088;1.85e-07;19!UBERON:0010230;1.85e-07;19!UBERON:0000073;4.38e-07;53!UBERON:0002616;4.38e-07;53!UBERON:0000970;4.70e-07;20!UBERON:0002240;5.16e-07;3!UBERON:0005174;5.16e-07;3!UBERON:0001137;5.16e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,5.98e-27,15;UBERON:0003057,5.98e-27,15;UBERON:0002298,8.62e-25,6;UBERON:0004733,1.45e-21,12;UBERON:0002028,1.45e-21,12;UBERON:0007277,1.45e-21,12;UBERON:0004732,8.31e-20,13;UBERON:0003075,1.66e-19,82;UBERON:0007284,1.66e-19,82;UBERON:0002346,2.29e-18,86;UBERON:0001017,2.16e-14,81;UBERON:0010371,2.55e-14,104;UBERON:0001016,3.91e-14,89;UBERON:0000955,6.79e-14,68;UBERON:0006238,6.79e-14,68;UBERON:0001049,1.65e-13,56;UBERON:0005068,1.65e-13,56;UBERON:0006241,1.65e-13,56;UBERON:0007135,1.65e-13,56;UBERON:0000988,2.83e-13,3;UBERON:0001896,2.83e-13,3;UBERON:0005290,2.83e-13,3;UBERON:0010096,2.83e-13,3;UBERON:0004121,9.21e-13,171;UBERON:0000924,9.21e-13,171;UBERON:0006601,9.21e-13,171;UBERON:0002680,8.22e-12,9;UBERON:0001895,8.22e-12,9;UBERON:0010092,8.22e-12,9;UBERON:0000073,1.70e-10,53;UBERON:0002616,1.70e-10,53;UBERON:0010314,3.11e-10,132;UBERON:0002148,1.22e-09,2;UBERON:0006331,1.22e-09,2;UBERON:0009662,1.22e-09,2;UBERON:0001897,1.39e-09,2;UBERON:0010225,1.39e-09,2;UBERON:0007625,1.76e-09,11;UBERON:0000125,5.83e-08,9;UBERON:0002308,5.83e-08,9;UBERON:0000019,4.44e-07,20;UBERON:0000047,4.44e-07,20;UBERON:0010312,4.44e-07,20;UBERON:0004088,4.44e-07,20;UBERON:0010230,4.44e-07,20;UBERON:0003072,4.44e-07,20;UBERON:0004128,4.44e-07,20;UBERON:0003071,4.44e-07,20;UBERON:0002240,5.02e-07,3;UBERON:0005174,5.02e-07,3;UBERON:0001137,5.02e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,2.70866327768933,7.34402488479311,0.940364164434263,1.14494394852423,0.821246550437305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0,0,0,0.973269740605272,1.51255707462509,4.21285855178871,0.702678285545008,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,1.25849830862972,0.275118041940067,0,0.516833518338658,0,0,0,0,0,0,0,0.17859945656816,0,0.675668882899933,0,3.79706263827252,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0.226864366320042,0,0,0,0.600182192168805,0.103052529238439,0,0.744467425326359,2.02531598689519,0.68205903612839,1.7670364197088,0.184099797284599,0,0,0,2.54340888465731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52631302506568,0.144366447761074,0,0.190254152234598,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14330573052231,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,4.57535895367776,3.03329280955175,6.62350143142526,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,2.42502057157008,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0.812839312631559,0.501689773854853,0,0,0,0,0,0.256450125116389,0.656029291399411,9.11059505060049,0,0.0915694648183434,0,0,0,0,1.06337790121334,0,0,0,0,0,0,2.1367688555217,0,0,0,0,0,0,0,0,0,0,0.37064843820784,0.143124886741991,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0.578775534266688,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,1.42068073403207,0,1.48482340416319,0.614321404198464,0,0,0,0,0,0.19924798825107,0,0,11.0450177102327,0,0,0,0,0,0,0,0,0,0,0,0,0.524759999977174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975966209950223,0,0,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.977756913674015,1.12222348352147,0,2.39771531498556,0,0,0,0,0,0,13.8622290195086,12.7615472501047,7.34387166981517,0,0.600420288709789,2.87501295673185,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0.211200673038813,0,0,0,0,0,0,0,0.653174720218818,1.19730191562487,0,0,0.679872549120754,0,0,1.55139547633861,5.42153667145029,0.171086837884329,0.704815022316672,0.961086713109252,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.3755727921195,2.86704597845036,2.21858103073705,1.36612086471044,0,0.249960815924213,0,0.285465333544967,0.235265819698172,0,0,0,0,0.554805861502613,0,0.754703705257725,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0.694567422971502,0,0.358177682162975,0,0,0,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,3.45039396469382,0,0.54604819096007,0.848662649770126,0,0,0,0,0,0,0,0.6124909547064,0.0642292250964595,0,0.478901577171454,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.824405532520789,0,0,0,0,0,0,0,0,0,0,0,0,1.35939465953663,0.131545547125698,0,0,0,0.157115589916002,0,0,0,1.43325506366115,2.21577286947635,0,0,0,0,0.62164849248911,0.6828739083758,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,5.49663707921847,7.42616000817715,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0.160482733378337,0.730336388246517,0,5.73358332605805,0,0.0679914901909147,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,3.31667775783512,1.65492793379032,0,0.23806443146374,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr1:41898864..41898890,+ | |||
}} |
Latest revision as of 08:16, 28 July 2015
Short description: | p@chr1:41898864..41898890, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:41898864..41898890, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 5.23e-12 | 15 |
glial cell | 5.23e-12 | 15 |
glioblast | 5.23e-12 | 15 |
glioblast (sensu Vertebrata) | 5.23e-12 | 15 |
neurectodermal cell | 6.20e-11 | 59 |
neuron associated cell | 1.24e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 1.24e-10 | 17 |
oligodendrocyte | 3.39e-10 | 7 |
macroglial cell | 3.39e-10 | 7 |
astrocyte | 3.39e-10 | 7 |
oligodendrocyte precursor cell | 3.39e-10 | 7 |
columnar/cuboidal epithelial cell | 8.37e-09 | 27 |
ectodermal cell | 1.78e-08 | 72 |
receptor cell | 2.99e-07 | 6 |
sensory epithelial cell | 2.99e-07 | 6 |
olfactory epithelial cell | 2.99e-07 | 6 |
neurecto-epithelial cell | 3.49e-07 | 20 |
neural cell | 3.52e-07 | 25 |
astrocyte of the cerebellum | 6.91e-07 | 3 |