FF:10153-102I9: Difference between revisions

Latest revision as of 12:22, 3 June 2020

Name:	hippocampus, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12312
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hippocampus
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005074

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12312		CAGE		DRX008668		DRR009540

Accession ID Hg19

Library id		BAM		CTSS
CNhs12312		DRZ000965		DRZ002350

Accession ID Hg38

Library id		BAM		CTSS
CNhs12312		DRZ012315		DRZ013700

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10025		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.373
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.032
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.323
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0555
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.398
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.421
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.105
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0427
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0555
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.149
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.259
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.291
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.189
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0552
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.247
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.961
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.105
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0555
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.156
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.149
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.101
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.838
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.247
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.226
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.105
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.105
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.463
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.042
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.463
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0555
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.587
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0622
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.409
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.421
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.528
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.551
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.988
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0555
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.149
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.291
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.08
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.557
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.63
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.149
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.521
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.105
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.571
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0555
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12312

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0184
MA0003.1	MA0003.1	0.219
MA0004.1	MA0004.1	0.336
MA0006.1	MA0006.1	0.323
MA0007.1	MA0007.1	0.416
MA0009.1	MA0009.1	0.0887
MA0014.1	MA0014.1	0.64
MA0017.1	MA0017.1	0.00129
MA0018.2	MA0018.2	0.732
MA0019.1	MA0019.1	0.639
MA0024.1	MA0024.1	0.998
MA0025.1	MA0025.1	0.774
MA0027.1	MA0027.1	0.384
MA0028.1	MA0028.1	0.0529
MA0029.1	MA0029.1	0.0143
MA0030.1	MA0030.1	0.494
MA0031.1	MA0031.1	0.937
MA0035.2	MA0035.2	0.00379
MA0038.1	MA0038.1	0.384
MA0039.2	MA0039.2	0.178
MA0040.1	MA0040.1	0.677
MA0041.1	MA0041.1	0.44
MA0042.1	MA0042.1	0.972
MA0043.1	MA0043.1	0.602
MA0046.1	MA0046.1	0.0055
MA0047.2	MA0047.2	0.0581
MA0048.1	MA0048.1	0.184
MA0050.1	MA0050.1	0.0543
MA0051.1	MA0051.1	0.152
MA0052.1	MA0052.1	0.455
MA0055.1	MA0055.1	0.00329
MA0057.1	MA0057.1	0.808
MA0058.1	MA0058.1	0.29
MA0059.1	MA0059.1	0.0704
MA0060.1	MA0060.1	0.775
MA0061.1	MA0061.1	0.00757
MA0062.2	MA0062.2	0.00153
MA0065.2	MA0065.2	2.75607e-4
MA0066.1	MA0066.1	0.0093
MA0067.1	MA0067.1	0.949
MA0068.1	MA0068.1	0.779
MA0069.1	MA0069.1	0.433
MA0070.1	MA0070.1	0.619
MA0071.1	MA0071.1	0.0208
MA0072.1	MA0072.1	0.299
MA0073.1	MA0073.1	0.383
MA0074.1	MA0074.1	0.261
MA0076.1	MA0076.1	0.089
MA0077.1	MA0077.1	0.0915
MA0078.1	MA0078.1	0.737
MA0079.2	MA0079.2	0.615
MA0080.2	MA0080.2	6.11493e-8
MA0081.1	MA0081.1	0.0328
MA0083.1	MA0083.1	0.0147
MA0084.1	MA0084.1	0.556
MA0087.1	MA0087.1	0.597
MA0088.1	MA0088.1	0.159
MA0090.1	MA0090.1	0.455
MA0091.1	MA0091.1	0.481
MA0092.1	MA0092.1	0.271
MA0093.1	MA0093.1	0.356
MA0099.2	MA0099.2	5.76308e-21
MA0100.1	MA0100.1	0.511
MA0101.1	MA0101.1	0.0036
MA0102.2	MA0102.2	0.157
MA0103.1	MA0103.1	0.127
MA0104.2	MA0104.2	0.371
MA0105.1	MA0105.1	7.83264e-4
MA0106.1	MA0106.1	0.0229
MA0107.1	MA0107.1	0.00398
MA0108.2	MA0108.2	0.228
MA0111.1	MA0111.1	0.52
MA0112.2	MA0112.2	6.34971e-4
MA0113.1	MA0113.1	0.53
MA0114.1	MA0114.1	0.00221
MA0115.1	MA0115.1	0.559
MA0116.1	MA0116.1	0.00676
MA0117.1	MA0117.1	0.796
MA0119.1	MA0119.1	0.133
MA0122.1	MA0122.1	0.839
MA0124.1	MA0124.1	0.579
MA0125.1	MA0125.1	0.208
MA0131.1	MA0131.1	0.963
MA0135.1	MA0135.1	0.0198
MA0136.1	MA0136.1	4.02178e-12
MA0137.2	MA0137.2	0.911
MA0138.2	MA0138.2	0.494
MA0139.1	MA0139.1	0.372
MA0140.1	MA0140.1	3.55621e-4
MA0141.1	MA0141.1	0.00328
MA0142.1	MA0142.1	0.82
MA0143.1	MA0143.1	0.459
MA0144.1	MA0144.1	0.349
MA0145.1	MA0145.1	0.191
MA0146.1	MA0146.1	0.0178
MA0147.1	MA0147.1	0.243
MA0148.1	MA0148.1	0.0599
MA0149.1	MA0149.1	0.017
MA0150.1	MA0150.1	3.94687e-5
MA0152.1	MA0152.1	0.525
MA0153.1	MA0153.1	0.221
MA0154.1	MA0154.1	0.0454
MA0155.1	MA0155.1	0.639
MA0156.1	MA0156.1	4.45064e-8
MA0157.1	MA0157.1	0.551
MA0159.1	MA0159.1	0.00501
MA0160.1	MA0160.1	0.00702
MA0162.1	MA0162.1	0.113
MA0163.1	MA0163.1	3.66737e-6
MA0164.1	MA0164.1	0.735
MA0258.1	MA0258.1	0.0093
MA0259.1	MA0259.1	0.669

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12312

Novel motif	Logo	P-value
1	1	0.0445
10	10	0.05
100	100	0.369
101	101	0.503
102	102	0.983
103	103	0.116
104	104	0.107
105	105	0.16
106	106	0.0475
107	107	0.141
108	108	0.881
109	109	0.00128
11	11	0.01
110	110	0.0501
111	111	0.0881
112	112	0.281
113	113	0.656
114	114	0.104
115	115	0.974
116	116	0.182
117	117	0.0123
118	118	0.139
119	119	0.215
12	12	0.587
120	120	0.208
121	121	0.335
122	122	0.737
123	123	0.977
124	124	0.39
125	125	0.318
126	126	0.0413
127	127	0.405
128	128	0.244
129	129	0.546
13	13	0.00261
130	130	0.304
131	131	0.0603
132	132	0.491
133	133	0.113
134	134	0.577
135	135	0.481
136	136	0.00235
137	137	0.724
138	138	0.807
139	139	0.168
14	14	0.819
140	140	0.744
141	141	0.385
142	142	0.601
143	143	0.0334
144	144	0.992
145	145	0.185
146	146	0.543
147	147	0.899
148	148	0.212
149	149	0.275
15	15	0.0736
150	150	0.164
151	151	0.565
152	152	0.0954
153	153	0.996
154	154	0.54
155	155	0.583
156	156	0.339
157	157	0.44
158	158	0.405
159	159	0.0271
16	16	0.0432
160	160	0.218
161	161	0.198
162	162	0.745
163	163	0.896
164	164	0.0354
165	165	0.0959
166	166	0.713
167	167	0.734
168	168	0.459
169	169	0.00981
17	17	0.107
18	18	0.0817
19	19	0.197
2	2	0.847
20	20	0.204
21	21	0.0456
22	22	0.224
23	23	0.412
24	24	0.0517
25	25	0.42
26	26	9.72582e-4
27	27	0.702
28	28	0.674
29	29	0.00663
3	3	0.0464
30	30	0.849
31	31	0.858
32	32	0.0256
33	33	0.0466
34	34	0.684
35	35	0.582
36	36	0.136
37	37	0.0353
38	38	0.353
39	39	0.33
4	4	0.635
40	40	0.0278
41	41	0.272
42	42	0.199
43	43	0.126
44	44	0.151
45	45	0.696
46	46	0.0729
47	47	0.058
48	48	0.0518
49	49	0.214
5	5	0.62
50	50	0.384
51	51	0.373
52	52	0.546
53	53	0.874
54	54	0.369
55	55	0.725
56	56	0.503
57	57	0.348
58	58	0.292
59	59	0.0644
6	6	0.909
60	60	0.0682
61	61	0.0988
62	62	0.185
63	63	0.196
64	64	0.154
65	65	0.248
66	66	0.117
67	67	0.257
68	68	0.173
69	69	0.342
7	7	0.0554
70	70	0.0497
71	71	0.0109
72	72	0.39
73	73	0.0295
74	74	0.97
75	75	0.0259
76	76	0.352
77	77	0.171
78	78	0.00124
79	79	0.271
8	8	0.0782
80	80	0.439
81	81	0.606
82	82	0.608
83	83	0.017
84	84	0.556
85	85	0.242
86	86	0.209
87	87	1.81986e-4
88	88	0.807
89	89	0.279
9	9	0.413
90	90	0.105
91	91	0.875
92	92	0.486
93	93	0.977
94	94	0.184
95	95	0.00919
96	96	0.909
97	97	0.796
98	98	0.252
99	99	0.567

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12312

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0010153 hippocampus - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010153 (hippocampus - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008559
+|DRA_sample_Accession=CAGE@SAMD00005074
-|accession_numbers=CAGE;DRX008668;DRR009540;DRZ000965;DRZ002350
+|HumanCAGEScanFiles=NCig10025;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008668;DRR009540;DRZ000965;DRZ002350;DRZ012315;DRZ013700
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.60!398.12!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.45!279.08!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.24!174.75!SOX10;;chr3:181429704..181429722,+!p1@SOX2!2.23!166.99!SOX2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.99!96.70!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.88!154.86!C11orf9;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.73!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.88!74.09!HIF3A;;chr14:29235961..29236008,+!p1@FOXG1!1.84!68.78!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!1.79!60.61!NEUROD2;;chr4:81118647..81118666,+!p1@PRDM8!1.76!73.69!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.76!57.07!POU3F3;;chr12:106976678..106976708,+!p2@RFX4!1.75!55.03!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.74!53.53!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.73!70.14!BHLHE41;;chr15:80733570..80733659,+!p2@ARNT2!1.73!53.12!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.73!52.17!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.72!86.90!ZEB2;;chr17:53342311..53342400,+!p1@HLF!1.70!55.84!HLF;;chr19:46800289..46800327,+!p2@HIF3A!1.68!46.72!HIF3A;;chr12:54779511..54779577,-!p5@ZNF385A!1.67!45.90!ZNF385A;;chr16:1031762..1031781,+!p1@SOX8!1.66!44.54!SOX8;;chr11:113930425..113930471,+!p1@ZBTB16!1.64!60.47!ZBTB16;;chr9:77112244..77112262,+!p1@RORB!1.63!46.58!RORB;;chr9:126774018..126774055,+!p1@LHX2!1.63!41.68!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.63!41.54!KCNIP3;;chr12:26277956..26277980,-!p1@BHLHE41!1.61!137.43!BHLHE41;;chr8:53322304..53322340,-!p1@ST18!1.61!40.18!ST18;;chr10:134599649..134599653,-!p1@NKX6-2!1.61!39.77!NKX6-2;;chr14:29234581..29234601,+!p2@FOXG1!1.61!39.50!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.53!ZNF483;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.58!ARNT2;;chr11:31832862..31832884,-!p2@PAX6!1.59!37.59!PAX6;;chr6:19837592..19837621,+!p1@ID4!1.58!216.15!ID4;;chr10:119302232..119302265,+!p1@EMX2!1.57!36.37!EMX2;;chr10:48355030..48355090,+!p1@ZNF488!1.56!45.36!ZNF488;;chr14:33403881..33403924,+!p1@NPAS3!1.56!35.00!NPAS3;;chr2:60781201..60781258,-!p3@BCL11A!1.54!33.51!BCL11A;;chr4:57547454..57547469,-!p1@HOPX!1.53!32.96!HOPX;;chr7:31380292..31380351,-!p1@NEUROD6!1.53!32.55!NEUROD6;;chr2:2334997..2335053,-!p1@MYT1L!1.49!30.10!MYT1L;;chr12:106976774..106976788,+!p1@RFX4!1.49!29.56!RFX4;;chr1:61548069..61548102,+!p3@NFIA!1.47!68.24!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.47!35.41!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.45!265.32!SOX9;;chr2:166326200..166326216,+!p1@CSRNP3!1.45!39.23!CSRNP3;;chr11:8102846..8102892,+!p1@TUB!1.45!37.86!TUB;;chr14:29236269..29236285,+!p3@FOXG1!1.44!26.42!FOXG1;;chr16:85932760..85932775,+!p1@IRF8!1.43!25.74!IRF8;;chrX:25034067..25034088,-!p1@ARX!1.43!25.74!ARX;;chr1:244219775..244219893,+!p2@ZNF238!1.40!32.28!ZNF238;;chr1:2461692..2461710,-!p1@HES5!1.40!23.84!HES5;;chr14:33403648..33403710,+!p3@NPAS3!1.39!23.43!NPAS3;;chr8:53322347..53322378,-!p2@ST18!1.38!23.02!ST18;;chr17:7492684..7492778,-!p2@SOX15!1.37!46.99!SOX15;;chr1:214161272..214161322,+!p1@PROX1!1.36!30.51!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.93!ZBED1;;chr22:41763452..41763466,+!p2@TEF!1.35!21.25!TEF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.33!20.29!SMARCE1;;chr10:64134120..64134183,+!p1@ZNF365!1.31!23.43!ZNF365;;chr19:13135582..13135600,+!p3@NFIX!1.31!19.48!NFIX;;chr16:51185318..51185348,-!p2@SALL1!1.30!19.07!SALL1;;chr17:38219209..38219230,+!p1@THRA!1.29!232.50!THRA;;chr11:47400078..47400106,-!p1@SPI1!1.28!18.12!SPI1;;chr11:31832658..31832681,-!p1@PAX6!1.27!17.57!PAX6;;chr16:79634624..79634642,-!p1@MAF!1.26!66.06!MAF;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.03!ASCL1;;chr7:63505799..63505904,+!p1@ZNF727!1.24!16.48!ZNF727;;chr3:114819124..114819200,-!p3@ZBTB20!1.23!37.05!ZBTB20;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.79!HIVEP2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.23!16.07!POU3F3;;chr19:13135386..13135435,+!p4@NFIX!1.22!15.66!NFIX;;chr9:126774058..126774081,+!p3@LHX2!1.22!15.66!LHX2;;chr2:162272785..162272836,+!p1@TBR1!1.21!15.12!TBR1;;chr3:114173720..114173794,-!p6@ZBTB20!1.20!14.98!ZBTB20;;chr8:65492915..65492932,+!p1@BHLHE22!1.20!14.71!BHLHE22;;chr15:80735246..80735321,+!p3@ARNT2!1.19!14.57!ARNT2;;chr13:100623375..100623425,-!p1@ZIC5!1.19!14.57!ZIC5;;chr8:30890810..30890880,-!p1@PURG!1.18!14.17!PURG;;chr6:126112039..126112062,+!p8@NCOA7!1.17!16.75!NCOA7;;chr14:33408072..33408114,+!p2@NPAS3!1.16!16.07!NPAS3;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.36!BCL11A;;chr11:31832807..31832823,-!p4@PAX6!1.14!12.80!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.14!12.80!SOX5;;chr9:14314946..14314983,-!p8@NFIB!1.14!12.80!NFIB;;chr14:22005197..22005261,-!p3@SALL2!1.14!12.67!SALL2;;chr1:167298300..167298319,+!p2@POU2F1!1.13!12.53!POU2F1;;chr21:39870339..39870443,-!p1@ERG!1.13!12.39!ERG;;chr8:40755333..40755352,-!p1@ZMAT4!1.13!12.39!ZMAT4;;chr13:100634031..100634045,+!p1@ZIC2!1.13!12.39!ZIC2;;chr12:24715376..24715432,-!p1@SOX5!1.12!15.39!SOX5;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002421;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10153-102I9
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0010153
 |is_obsolete=
 |library_id=CNhs12312
-|library_id_phase_based=1:CNhs12312
+|library_id_phase_based=2:CNhs12312
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10153
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10153
 |name=hippocampus, adult, donor10252
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=NCig10025,,,
 |profile_hcage=CNhs12312,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 89: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10153-102I9;search_select_hide=table117:FF:10153-102I9
 }}

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FF:10153-102I9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:22, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0