FF:10536-107G5: Difference between revisions

Latest revision as of 14:28, 3 June 2020

Name:	cholangiocellular carcinoma cell line:HuH-28
Species:	Human (Homo sapiens)
Library ID:	CNhs11283
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	unknown
age	NA
cell type	duct cell, bile duct
cell line	HuH-28
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005972

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11283		CAGE		DRX007847		DRR008719

Accession ID Hg19

Library id		BAM		CTSS
CNhs11283		DRZ000144		DRZ001529

Accession ID Hg38

Library id		BAM		CTSS
CNhs11283		DRZ011494		DRZ012879

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0355
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.012
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.196
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0415
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0853
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0713
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.033
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.267
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0311
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.108
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.33
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0319
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.598
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0469
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.179
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.307
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0351
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.374
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11283

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.332
MA0003.1	MA0003.1	0.0754
MA0004.1	MA0004.1	0.897
MA0006.1	MA0006.1	0.814
MA0007.1	MA0007.1	0.64
MA0009.1	MA0009.1	0.204
MA0014.1	MA0014.1	0.783
MA0017.1	MA0017.1	0.0417
MA0018.2	MA0018.2	0.321
MA0019.1	MA0019.1	0.638
MA0024.1	MA0024.1	0.186
MA0025.1	MA0025.1	0.169
MA0027.1	MA0027.1	0.502
MA0028.1	MA0028.1	1.32001e-8
MA0029.1	MA0029.1	0.101
MA0030.1	MA0030.1	0.333
MA0031.1	MA0031.1	0.906
MA0035.2	MA0035.2	0.462
MA0038.1	MA0038.1	0.0563
MA0039.2	MA0039.2	0.276
MA0040.1	MA0040.1	0.753
MA0041.1	MA0041.1	0.132
MA0042.1	MA0042.1	0.223
MA0043.1	MA0043.1	0.0138
MA0046.1	MA0046.1	0.135
MA0047.2	MA0047.2	0.313
MA0048.1	MA0048.1	0.341
MA0050.1	MA0050.1	0.495
MA0051.1	MA0051.1	0.596
MA0052.1	MA0052.1	0.0471
MA0055.1	MA0055.1	0.228
MA0057.1	MA0057.1	0.103
MA0058.1	MA0058.1	0.925
MA0059.1	MA0059.1	0.492
MA0060.1	MA0060.1	0.0623
MA0061.1	MA0061.1	0.458
MA0062.2	MA0062.2	2.63214e-8
MA0065.2	MA0065.2	0.00723
MA0066.1	MA0066.1	0.136
MA0067.1	MA0067.1	0.129
MA0068.1	MA0068.1	0.559
MA0069.1	MA0069.1	0.993
MA0070.1	MA0070.1	0.412
MA0071.1	MA0071.1	0.905
MA0072.1	MA0072.1	0.248
MA0073.1	MA0073.1	0.48
MA0074.1	MA0074.1	0.453
MA0076.1	MA0076.1	7.75883e-14
MA0077.1	MA0077.1	0.888
MA0078.1	MA0078.1	0.924
MA0079.2	MA0079.2	0.392
MA0080.2	MA0080.2	1.14647e-8
MA0081.1	MA0081.1	0.148
MA0083.1	MA0083.1	0.331
MA0084.1	MA0084.1	0.307
MA0087.1	MA0087.1	0.53
MA0088.1	MA0088.1	0.755
MA0090.1	MA0090.1	0.0196
MA0091.1	MA0091.1	0.354
MA0092.1	MA0092.1	0.407
MA0093.1	MA0093.1	0.85
MA0099.2	MA0099.2	1.58075e-5
MA0100.1	MA0100.1	0.543
MA0101.1	MA0101.1	0.301
MA0102.2	MA0102.2	0.0255
MA0103.1	MA0103.1	0.0012
MA0104.2	MA0104.2	0.773
MA0105.1	MA0105.1	0.215
MA0106.1	MA0106.1	0.625
MA0107.1	MA0107.1	0.356
MA0108.2	MA0108.2	0.0838
MA0111.1	MA0111.1	0.844
MA0112.2	MA0112.2	0.0185
MA0113.1	MA0113.1	0.338
MA0114.1	MA0114.1	0.382
MA0115.1	MA0115.1	0.126
MA0116.1	MA0116.1	0.0101
MA0117.1	MA0117.1	0.859
MA0119.1	MA0119.1	0.861
MA0122.1	MA0122.1	0.541
MA0124.1	MA0124.1	0.498
MA0125.1	MA0125.1	0.731
MA0131.1	MA0131.1	0.484
MA0135.1	MA0135.1	0.0225
MA0136.1	MA0136.1	0.00366
MA0137.2	MA0137.2	0.917
MA0138.2	MA0138.2	0.0252
MA0139.1	MA0139.1	0.748
MA0140.1	MA0140.1	0.326
MA0141.1	MA0141.1	0.847
MA0142.1	MA0142.1	0.15
MA0143.1	MA0143.1	0.481
MA0144.1	MA0144.1	0.731
MA0145.1	MA0145.1	0.344
MA0146.1	MA0146.1	0.0439
MA0147.1	MA0147.1	0.432
MA0148.1	MA0148.1	0.949
MA0149.1	MA0149.1	0.352
MA0150.1	MA0150.1	0.402
MA0152.1	MA0152.1	0.0199
MA0153.1	MA0153.1	0.494
MA0154.1	MA0154.1	0.0278
MA0155.1	MA0155.1	0.054
MA0156.1	MA0156.1	0.0624
MA0157.1	MA0157.1	0.712
MA0159.1	MA0159.1	0.347
MA0160.1	MA0160.1	0.993
MA0162.1	MA0162.1	0.471
MA0163.1	MA0163.1	0.0335
MA0164.1	MA0164.1	0.0181
MA0258.1	MA0258.1	0.116
MA0259.1	MA0259.1	0.787

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11283

Novel motif	Logo	P-value
1	1	0.647
10	10	0.551
100	100	0.7
101	101	0.558
102	102	0.127
103	103	0.36
104	104	0.228
105	105	0.0313
106	106	0.0526
107	107	0.0766
108	108	0.877
109	109	0.922
11	11	0.432
110	110	0.479
111	111	0.81
112	112	0.0637
113	113	0.033
114	114	0.855
115	115	0.836
116	116	0.591
117	117	0.577
118	118	0.953
119	119	0.723
12	12	0.806
120	120	0.262
121	121	0.241
122	122	0.583
123	123	0.0272
124	124	0.777
125	125	0.361
126	126	0.472
127	127	0.125
128	128	0.163
129	129	0.178
13	13	0.974
130	130	0.226
131	131	0.236
132	132	0.431
133	133	0.111
134	134	0.248
135	135	0.762
136	136	0.618
137	137	0.23
138	138	0.748
139	139	0.634
14	14	0.463
140	140	0.307
141	141	0.537
142	142	0.36
143	143	0.235
144	144	0.73
145	145	0.0894
146	146	0.981
147	147	0.798
148	148	0.682
149	149	0.9
15	15	0.162
150	150	0.903
151	151	0.413
152	152	0.213
153	153	0.417
154	154	0.654
155	155	0.0431
156	156	0.75
157	157	0.749
158	158	0.29
159	159	0.0954
16	16	0.941
160	160	0.171
161	161	0.602
162	162	0.213
163	163	0.0509
164	164	0.851
165	165	0.417
166	166	0.704
167	167	0.00815
168	168	0.0494
169	169	0.109
17	17	0.297
18	18	0.405
19	19	0.471
2	2	0.088
20	20	0.341
21	21	0.464
22	22	0.094
23	23	0.0585
24	24	0.322
25	25	0.337
26	26	0.75
27	27	0.0683
28	28	0.362
29	29	0.775
3	3	0.917
30	30	0.234
31	31	0.941
32	32	0.402
33	33	0.619
34	34	0.0498
35	35	0.959
36	36	0.567
37	37	0.883
38	38	0.218
39	39	0.703
4	4	0.595
40	40	0.943
41	41	0.415
42	42	0.873
43	43	0.388
44	44	0.0543
45	45	0.454
46	46	0.471
47	47	0.574
48	48	0.228
49	49	0.327
5	5	0.0625
50	50	0.994
51	51	0.286
52	52	0.0243
53	53	0.19
54	54	0.948
55	55	0.713
56	56	0.0788
57	57	0.938
58	58	0.0703
59	59	0.0298
6	6	0.673
60	60	0.0769
61	61	0.589
62	62	0.108
63	63	0.797
64	64	0.4
65	65	0.203
66	66	0.014
67	67	0.209
68	68	0.514
69	69	0.344
7	7	0.52
70	70	0.0353
71	71	0.976
72	72	0.251
73	73	0.5
74	74	0.00186
75	75	0.138
76	76	0.121
77	77	0.565
78	78	0.00647
79	79	0.475
8	8	0.802
80	80	0.451
81	81	0.29
82	82	0.343
83	83	0.618
84	84	0.498
85	85	0.523
86	86	0.893
87	87	0.283
88	88	0.479
89	89	0.412
9	9	0.0315
90	90	0.464
91	91	0.00358
92	92	0.157
93	93	0.804
94	94	0.978
95	95	0.156
96	96	0.248
97	97	0.665
98	98	0.0161
99	99	0.238

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11283

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102842 cholangioma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001282 (intralobular bile duct)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0009842 (acinus)
0000353 (parenchyma)
0003704 (intrahepatic bile duct)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0001171 (portal lobule)
0004647 (liver lobule)
0002294 (biliary system)
0001173 (biliary tree)
0001172 (hepatic acinus)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0102842 (cholangioma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005972
-|accession_numbers=CAGE;DRX007847;DRR008719;DRZ000144;DRZ001529
+|accession_numbers=CAGE;DRX007847;DRR008719;DRZ000144;DRZ001529;DRZ011494;DRZ012879
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001282,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0009842,UBERON:0000353,UBERON:0003704,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0003928,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0001171,UBERON:0004647,UBERON:0002294,UBERON:0001173,UBERON:0001172,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:72756637..72756664,-!p3@MSC!1.83!75.66!MSC;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.67!45.69!SEBOX;;chr8:72755987..72756002,-!p7@MSC!1.61!39.99!MSC;;chr8:72756267..72756296,-!p4@MSC!1.52!46.15!MSC;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!47.97!FOXQ1;;chr8:72756063..72756125,-!p1@MSC!1.47!56.74!MSC;;chr18:55102628..55102646,+!p2@ONECUT2!1.44!26.32!ONECUT2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.41!24.50!SOHLH2;;chr8:72756667..72756736,-!p2@MSC!1.40!37.60!MSC;;chr2:119605214..119605230,-!p1@EN1!1.36!22.10!EN1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.36!22.10!SEBOX;;chr18:55102598..55102623,+!p1@ONECUT2!1.35!21.31!ONECUT2;;chr5:174151612..174151633,+!p2@MSX2!1.35!21.19!MSX2;;chr5:174151553..174151610,+!p1@MSX2!1.32!32.59!MSX2;;chr6:45296048..45296082,+!p1@RUNX2!1.30!21.54!RUNX2;;chr3:193853927..193853944,+!p1@HES1!1.24!517.64!HES1;;chr18:19749541..19749557,+!p1@GATA6!1.18!43.75!GATA6;;chr8:72756380..72756427,-!p8@MSC!1.15!12.99!MSC;;chr1:37940170..37940190,+!p1@ZC3H12A!1.13!154.51!ZC3H12A;;chr14:62162285..62162296,+!p3@HIF1A!1.11!62.33!HIF1A;;chr8:72756213..72756243,-!p5@MSC!1.11!15.38!MSC;;chr2:113994526..113994556,-!p3@PAX8!1.11!11.74!PAX8;;chr5:321810..321877,+!p1@AHRR!1.10!36.80!AHRR;;chr11:46299199..46299233,+!p1@CREB3L1!1.09!58.68!CREB3L1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.06!100.38!ZNF595;;chr2:19558373..19558392,-!p1@OSR1!1.06!28.83!OSR1;;chr2:113994491..113994515,-!p7@PAX8!1.05!10.14!PAX8;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.32!NCOA7;;chr1:75602043..75602093,+!p1@LHX8!1.03!9.69!LHX8;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!625.43!TSC22D1;;chr18:55102806..55102847,+!p3@ONECUT2!1.00!9.00!ONECUT2;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.00!GATA4;;chr8:72756023..72756055,-!p6@MSC!0.98!10.60!MSC;;chr8:49833948..49833973,-!p2@SNAI2!0.97!54.35!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.03!PCBP3;;chr1:164528687..164528711,+!p6@PBX1!0.97!9.80!PBX1;;chr1:158985493..158985535,+!p4@IFI16!0.96!12.53!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.94!10.48!BHLHE41;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.52!C11orf9;;chr20:6748325..6748352,+!p1@BMP2!0.93!11.17!BMP2;;chr5:142780189..142780223,-!p6@NR3C1!0.93!7.52!NR3C1;;chr3:187463179..187463201,-!p2@BCL6!0.92!31.56!BCL6;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.42!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!0.90!714.19!EPAS1;;chr16:79633894..79633954,-!p3@MAF!0.90!13.90!MAF;;chr6:45390300..45390335,+!p4@RUNX2!0.90!11.17!RUNX2;;chr6:126240442..126240459,+!p4@NCOA7!0.90!8.89!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.89!6.72!ISL1;;chr14:62162258..62162269,+!p2@HIF1A!0.88!67.11!HIF1A;;chr6:45390442..45390479,+!p8@RUNX2!0.88!10.37!RUNX2;;chr5:137804484..137804498,+!p2@EGR1!0.87!26.78!EGR1;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.17!TWIST2;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.19!TWIST2;;chr8:72756194..72756208,-!p9@MSC!0.86!6.27!MSC;;chr17:46703687..46703740,-!p1@HOXB9!0.86!6.27!HOXB9;;chr18:19749386..19749404,+!p2@GATA6!0.85!9.00!GATA6;;chr7:63505799..63505904,+!p1@ZNF727!0.85!6.15!ZNF727;;chr11:34642612..34642646,+!p1@EHF!0.85!6.15!EHF;;chr6:45390025..45390076,+!p2@RUNX2!0.84!14.93!RUNX2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.84!5.92!SEBOX;;chr6:106534230..106534254,+!p2@PRDM1!0.83!15.38!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!0.83!13.56!NCOA4;;chr11:125034640..125034655,+!p1@PKNOX2!0.83!5.70!PKNOX2;;chr17:46621146..46621180,-!p10@HOXB2!0.83!5.70!HOXB2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!305.71!NFKBIZ;;chr9:4300050..4300118,-!p1@GLIS3!0.81!38.74!GLIS3;;chr18:3450293..3450304,+!p4@TGIF1!0.81!14.36!TGIF1;;chr20:48807779..48807802,+!p10@CEBPB!0.81!9.23!CEBPB;;chr6:106534192..106534224,+!p1@PRDM1!0.80!16.07!PRDM1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.36!ZNF323;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.80!5.24!ZNF676;;chr3:71630980..71631110,-!p3@FOXP1!0.78!18.80!FOXP1;;chr6:28321971..28321995,-!p1@ZNF323!0.78!5.01!ZNF323;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.55!FOXD1;;chr8:72756251..72756262,-!p12@MSC!0.76!4.79!MSC;;chr9:73028814..73028895,-!p1@KLF9!0.75!51.27!KLF9;;chr5:124082322..124082364,-!p1@ZNF608!0.75!12.76!ZNF608;;chr5:137801160..137801176,+!p1@EGR1!0.74!501.80!EGR1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr3:193854202..193854232,+!p2@HES1!0.74!4.56!HES1;;chr8:81787006..81787031,-!p2@ZNF704!0.74!4.56!ZNF704;;chr19:35455110..35455149,-!p1@ZNF792!0.73!9.00!ZNF792;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.81!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.67!GLIS1;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.67!SHOX2;;chr8:49833978..49833996,-!p1@SNAI2!0.72!99.59!SNAI2;;chr20:48599506..48599526,+!p1@SNAI1!0.72!30.42!SNAI1;;chr20:32274150..32274166,-!p2@E2F1!0.72!8.55!E2F1;;chr6:45390269..45390298,+!p5@RUNX2!0.72!7.52!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!0.72!6.49!HOXB7;;chr3:101546827..101546847,+!p2@NFKBIZ!0.72!6.27!NFKBIZ;;chr17:46621101..46621143,-!p7@HOXB2!0.72!6.04!HOXB2;;chr8:72756522..72756533,-!p13@MSC!0.72!4.22!MSC;;chr3:141087339..141087387,+!p2@ZBTB38!0.71!47.40!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!0.70!4.79!HOXB2;;chr9:126774018..126774055,+!p1@LHX2!0.70!3.99!LHX2;;chr13:45009301..45009320,-!p7@TSC22D1!0.70!3.99!TSC22D1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.68!38.51!PPP1R13L;;chr9:73029219..73029289,-!p2@KLF9!0.68!12.88!KLF9;;chr19:20844356..20844365,-!p3@ZNF626!0.68!4.44!ZNF626;;chr9:73028786..73028797,-!p11@KLF9!0.68!3.76!KLF9;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.76!TFAP2A;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.81!BHLHE41;;chr7:28448965..28448994,+!p2@CREB5!0.67!14.58!CREB5;;chr20:48807648..48807671,+!p9@CEBPB!0.67!5.58!CEBPB;;chr15:80696703..80696754,+!p1@ARNT2!0.67!5.13!ARNT2;;chr13:45010857..45010868,-!p16@TSC22D1!0.67!3.65!TSC22D1;;chr18:3450161..3450183,+!p1@TGIF1!0.66!140.60!TGIF1;;chr12:77459306..77459365,-!p1@E2F7!0.66!51.96!E2F7;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.04!NCOA4;;chr12:53614115..53614154,-!p1@RARG!0.66!21.99!RARG;;chr5:137800912..137800941,+!p7@EGR1!0.66!3.53!EGR1;;chr1:8763440..8763460,-!p2@RERE!0.65!20.40!RERE;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.23!FOXD1;;chr18:19749517..19749531,+!p3@GATA6!0.65!6.72!GATA6;;chr1:75600067..75600094,+!p2@LHX8!0.65!3.42!LHX8;;chr4:111558135..111558198,-!p2@PITX2!0.65!3.42!PITX2;;chr19:20844346..20844351,-!p2@ZNF626!0.64!4.33!ZNF626;;chr6:21593973..21593988,+!p1@SOX4!0.63!139.24!SOX4;;chr1:935467..935484,-!p1@HES4!0.63!16.75!HES4;;chr5:124082279..124082319,-!p3@ZNF608!0.63!4.10!ZNF608;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.30!HOXB6;;chr20:48807351..48807384,+!p1@CEBPB!0.62!386.61!CEBPB;;chr8:48650697..48650708,-!p2@CEBPD!0.62!28.60!CEBPD;;chr2:70142232..70142251,+!p1@MXD1!0.62!20.97!MXD1;;chr1:158969752..158969780,+!p6@IFI16!0.62!6.04!IFI16;;chr21:36260295..36260310,-!p3@RUNX1!0.62!5.58!RUNX1;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.44!CEBPG;;chr7:73038839..73038862,-!p1@MLXIPL!0.62!3.19!MLXIPL;;chr8:72755203..72755239,-!p10@MSC!0.62!3.19!MSC;;chrX:153305787..153305807,-!p3@MECP2!0.62!3.19!MECP2;;chr7:17338324..17338341,+!p3@AHR!0.61!11.96!AHR;;chr18:3450334..3450341,+!p15@TGIF1!0.61!4.10!TGIF1;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.53!NCOA7;;chr5:142780237..142780261,-!p7@NR3C1!0.61!3.08!NR3C1;;chr12:115121962..115121987,-!p1@TBX3!0.60!29.97!TBX3;;chr8:23540441..23540466,-!p1@NKX3-1!0.60!6.61!NKX3-1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.76!TBX18;;chr6:45390399..45390418,+!p15@RUNX2!0.60!2.96!RUNX2;;chr1:75600333..75600348,+!p5@LHX8!0.60!2.96!LHX8;;chr7:17338266..17338282,+!p1@AHR!0.59!37.71!AHR;;chr1:164528616..164528660,+!p5@PBX1!0.59!6.61!PBX1;;chr17:46622440..46622477,-!p5@HOXB2!0.59!3.30!HOXB2;;chr13:36788718..36788729,-!p3@CCDC169-SOHLH2,p3@SOHLH2!0.59!2.85!SOHLH2;;chr8:48650715..48650735,-!p1@CEBPD!0.58!446.08!CEBPD;;chr10:77161504..77161530,-!p1@ZNF503!0.58!45.58!ZNF503;;chr13:73633131..73633149,+!p1@KLF5!0.58!36.58!KLF5;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.79!E2F1;;chr20:46130672..46130686,+!p2@NCOA3!0.58!15.04!NCOA3;;chr19:12203100..12203132,+!p1@ZNF788!0.58!6.49!ZNF788;;chr20:48807456..48807475,+!p3@CEBPB!0.58!6.04!CEBPB;;chr4:4861385..4861398,+!p1@MSX1!0.57!9.46!MSX1;;chr2:46602901..46602926,+!p7@EPAS1!0.57!3.87!EPAS1;;chr5:174151686..174151697,+!p4@MSX2!0.57!2.73!MSX2;;chr10:77161533..77161546,-!p2@ZNF503!0.56!12.65!ZNF503;;chr19:53636125..53636178,-!p1@ZNF415!0.56!8.77!ZNF415;;chr2:46524897..46524911,+!p2@EPAS1!0.56!8.66!EPAS1;;chr6:45390002..45390023,+!p6@RUNX2!0.56!5.01!RUNX2;;chr2:119604456..119604501,-!p2@EN1!0.56!2.62!EN1;;chr3:187463220..187463232,-!p3@BCL6!0.55!9.23!BCL6;;chr9:114287433..114287513,+!p1@ZNF483!0.55!7.86!ZNF483;;chr2:200322654..200322707,-!p2@SATB2!0.55!4.10!SATB2;;chr1:158979872..158979898,+!p3@IFI16!0.54!9.12!IFI16;;chr12:26277929..26277955,-!p3@BHLHE41!0.54!3.87!BHLHE41;;chr5:137804405..137804444,+!p3@EGR1!0.54!3.08!EGR1;;chr1:158985469..158985489,+!p7@IFI16!0.54!3.08!IFI16;;chr9:77112244..77112262,+!p1@RORB!0.54!2.85!RORB;;chr1:37945588..37945604,+!p3@ZC3H12A!0.54!2.51!ZC3H12A;;chr1:75600318..75600329,+!p4@LHX8!0.54!2.51!LHX8;;chr19:22605136..22605154,-!p1@ZNF98!0.54!2.51!ZNF98;;chr5:174151648..174151659,+!p3@MSX2!0.54!2.51!MSX2;;chr14:62162224..62162254,+!p1@HIF1A!0.53!446.77!HIF1A;;chr20:48807875..48807982,+!p2@CEBPB!0.53!68.14!CEBPB;;chr12:52445218..52445237,+!p1@NR4A1!0.53!38.40!NR4A1;;chr17:56065729..56065781,-!p2@VEZF1!0.53!12.65!VEZF1;;chr9:73028332..73028385,-!p3@KLF9!0.53!10.14!KLF9;;chr8:48650982..48651023,-!p3@CEBPD!0.53!7.06!CEBPD;;chr6:1610293..1610310,+!p1@FOXC1!0.53!4.44!FOXC1;;chr17:41622765..41622821,-!p2@ETV4!0.53!3.99!ETV4;;chr6:45390343..45390388,+!p10@RUNX2!0.53!3.53!RUNX2;;chr17:46622229..46622257,-!p6@HOXB2!0.53!2.96!HOXB2;;chr6:21594252..21594285,+!p11@SOX4!0.53!2.73!SOX4;;chr6:45390137..45390148,+!p12@RUNX2!0.53!2.39!RUNX2;;chr10:28032421..28032494,-!p2@MKX!0.53!2.39!MKX;;chr22:38597987..38598021,+!p2@MAFF!0.52!18.00!MAFF;;chr16:79634624..79634642,-!p1@MAF!0.52!11.17!MAF;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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10536-107G5
 |is_a=EFO:0002091;;FF:0000210;;FF:0102842
 |is_obsolete=
 |library_id=CNhs11283
-|library_id_phase_based=1:CNhs11283
+|library_id_phase_based=2:CNhs11283
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10536
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10536
 |name=cholangiocellular carcinoma cell line:HuH-28
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11283,LSID759,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10536-107G5;search_select_hide=table117:FF:10536-107G5
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FF:10536-107G5: Difference between revisions

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Latest revision as of 14:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0