FF:10475-106I7: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	retinoblastoma cell line:Y79
Species:	Human (Homo sapiens)
Library ID:	CNhs11267
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	NA
sex	female
age	2.5
cell type	unclassifiable
cell line	Y79
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005431

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11267		CAGE		DRX007992		DRR008864

Accession ID Hg19

Library id		BAM		CTSS
CNhs11267		DRZ000289		DRZ001674

Accession ID Hg38

Library id		BAM		CTSS
CNhs11267		DRZ011639		DRZ013024

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005431

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10069		RNA-Seq		DRX057126		DRR062885

Accession ID Hg19

Library id		BAM		CTSS
RDhi10069		DRZ007961

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.183
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.692
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0637
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0649
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.186
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0.0637
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.676
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0142
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0637
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.673
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.264
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0.949
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11267

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.99127e-4
MA0003.1	MA0003.1	0.225
MA0004.1	MA0004.1	0.159
MA0006.1	MA0006.1	0.106
MA0007.1	MA0007.1	0.279
MA0009.1	MA0009.1	0.571
MA0014.1	MA0014.1	0.775
MA0017.1	MA0017.1	0.0196
MA0018.2	MA0018.2	0.129
MA0019.1	MA0019.1	0.242
MA0024.1	MA0024.1	8.50216e-10
MA0025.1	MA0025.1	0.515
MA0027.1	MA0027.1	0.569
MA0028.1	MA0028.1	0.162
MA0029.1	MA0029.1	0.28
MA0030.1	MA0030.1	0.801
MA0031.1	MA0031.1	0.989
MA0035.2	MA0035.2	0.951
MA0038.1	MA0038.1	0.00309
MA0039.2	MA0039.2	0.991
MA0040.1	MA0040.1	0.0899
MA0041.1	MA0041.1	0.234
MA0042.1	MA0042.1	0.4
MA0043.1	MA0043.1	0.244
MA0046.1	MA0046.1	0.0844
MA0047.2	MA0047.2	0.17
MA0048.1	MA0048.1	0.235
MA0050.1	MA0050.1	1.23767e-12
MA0051.1	MA0051.1	8.71117e-7
MA0052.1	MA0052.1	0.0802
MA0055.1	MA0055.1	0.02
MA0057.1	MA0057.1	0.125
MA0058.1	MA0058.1	0.116
MA0059.1	MA0059.1	0.095
MA0060.1	MA0060.1	5.88556e-20
MA0061.1	MA0061.1	0.00821
MA0062.2	MA0062.2	0.595
MA0065.2	MA0065.2	0.0583
MA0066.1	MA0066.1	0.154
MA0067.1	MA0067.1	0.786
MA0068.1	MA0068.1	0.583
MA0069.1	MA0069.1	0.744
MA0070.1	MA0070.1	0.609
MA0071.1	MA0071.1	0.913
MA0072.1	MA0072.1	0.303
MA0073.1	MA0073.1	0.616
MA0074.1	MA0074.1	0.193
MA0076.1	MA0076.1	0.0335
MA0077.1	MA0077.1	0.267
MA0078.1	MA0078.1	0.954
MA0079.2	MA0079.2	0.188
MA0080.2	MA0080.2	7.71717e-12
MA0081.1	MA0081.1	0.0539
MA0083.1	MA0083.1	9.32455e-4
MA0084.1	MA0084.1	0.31
MA0087.1	MA0087.1	0.36
MA0088.1	MA0088.1	0.319
MA0090.1	MA0090.1	0.0124
MA0091.1	MA0091.1	0.42
MA0092.1	MA0092.1	0.266
MA0093.1	MA0093.1	0.115
MA0099.2	MA0099.2	9.1745e-18
MA0100.1	MA0100.1	0.125
MA0101.1	MA0101.1	0.0328
MA0102.2	MA0102.2	0.0297
MA0103.1	MA0103.1	0.737
MA0104.2	MA0104.2	0.0141
MA0105.1	MA0105.1	0.0543
MA0106.1	MA0106.1	0.25
MA0107.1	MA0107.1	0.00549
MA0108.2	MA0108.2	3.33224e-5
MA0111.1	MA0111.1	0.771
MA0112.2	MA0112.2	0.00267
MA0113.1	MA0113.1	0.0835
MA0114.1	MA0114.1	0.157
MA0115.1	MA0115.1	0.534
MA0116.1	MA0116.1	0.131
MA0117.1	MA0117.1	0.624
MA0119.1	MA0119.1	0.47
MA0122.1	MA0122.1	0.526
MA0124.1	MA0124.1	0.566
MA0125.1	MA0125.1	0.062
MA0131.1	MA0131.1	0.153
MA0135.1	MA0135.1	0.114
MA0136.1	MA0136.1	2.36182e-9
MA0137.2	MA0137.2	0.00184
MA0138.2	MA0138.2	0.44
MA0139.1	MA0139.1	0.408
MA0140.1	MA0140.1	0.893
MA0141.1	MA0141.1	0.243
MA0142.1	MA0142.1	0.873
MA0143.1	MA0143.1	0.795
MA0144.1	MA0144.1	8.16775e-5
MA0145.1	MA0145.1	0.0162
MA0146.1	MA0146.1	0.289
MA0147.1	MA0147.1	0.0184
MA0148.1	MA0148.1	0.173
MA0149.1	MA0149.1	0.834
MA0150.1	MA0150.1	1.36416e-4
MA0152.1	MA0152.1	0.999
MA0153.1	MA0153.1	0.172
MA0154.1	MA0154.1	0.0825
MA0155.1	MA0155.1	0.374
MA0156.1	MA0156.1	9.00392e-7
MA0157.1	MA0157.1	0.456
MA0159.1	MA0159.1	0.0563
MA0160.1	MA0160.1	0.26
MA0162.1	MA0162.1	0.243
MA0163.1	MA0163.1	0.00951
MA0164.1	MA0164.1	0.828
MA0258.1	MA0258.1	0.14
MA0259.1	MA0259.1	0.0528

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11267

Novel motif	Logo	P-value
1	1	0.995
10	10	0.424
100	100	0.331
101	101	0.7
102	102	0.419
103	103	0.0382
104	104	0.531
105	105	0.841
106	106	0.0011
107	107	0.0105
108	108	0.781
109	109	0.48
11	11	0.482
110	110	0.866
111	111	0.818
112	112	0.149
113	113	0.916
114	114	0.108
115	115	0.654
116	116	0.465
117	117	0.678
118	118	0.772
119	119	0.467
12	12	0.862
120	120	0.147
121	121	0.952
122	122	0.917
123	123	0.204
124	124	0.683
125	125	0.264
126	126	0.616
127	127	0.534
128	128	0.106
129	129	0.433
13	13	0.792
130	130	0.758
131	131	0.414
132	132	0.877
133	133	0.642
134	134	0.703
135	135	0.0622
136	136	0.971
137	137	0.164
138	138	0.102
139	139	0.0279
14	14	0.892
140	140	0.674
141	141	0.992
142	142	0.485
143	143	0.39
144	144	0.424
145	145	0.406
146	146	0.305
147	147	0.357
148	148	0.118
149	149	0.133
15	15	0.268
150	150	0.372
151	151	0.302
152	152	0.0158
153	153	0.653
154	154	0.921
155	155	0.43
156	156	0.98
157	157	0.415
158	158	0.0846
159	159	0.00587
16	16	0.166
160	160	0.548
161	161	0.662
162	162	0.841
163	163	0.185
164	164	0.453
165	165	0.219
166	166	0.697
167	167	0.491
168	168	0.0943
169	169	0.0166
17	17	0.313
18	18	0.22
19	19	0.121
2	2	0.148
20	20	0.42
21	21	0.961
22	22	0.0989
23	23	8.4699e-4
24	24	0.496
25	25	0.399
26	26	0.899
27	27	0.112
28	28	0.914
29	29	0.566
3	3	0.243
30	30	0.194
31	31	0.397
32	32	0.0498
33	33	0.379
34	34	0.394
35	35	0.91
36	36	0.963
37	37	0.16
38	38	0.43
39	39	0.325
4	4	0.228
40	40	0.687
41	41	0.129
42	42	0.611
43	43	0.156
44	44	0.431
45	45	0.238
46	46	0.438
47	47	0.727
48	48	0.908
49	49	0.691
5	5	0.233
50	50	0.364
51	51	0.45
52	52	0.126
53	53	0.899
54	54	0.279
55	55	0.0492
56	56	0.353
57	57	0.741
58	58	0.244
59	59	0.0355
6	6	0.775
60	60	0.00755
61	61	0.953
62	62	0.121
63	63	0.124
64	64	0.925
65	65	0.097
66	66	0.0451
67	67	0.993
68	68	0.588
69	69	0.494
7	7	0.319
70	70	0.0186
71	71	0.359
72	72	0.0371
73	73	0.0124
74	74	0.271
75	75	0.431
76	76	0.701
77	77	0.0396
78	78	0.971
79	79	0.183
8	8	0.406
80	80	0.042
81	81	0.372
82	82	0.163
83	83	0.447
84	84	0.463
85	85	0.0333
86	86	0.56
87	87	0.319
88	88	0.694
89	89	0.0312
9	9	0.151
90	90	0.588
91	91	0.362
92	92	0.0263
93	93	0.91
94	94	0.304
95	95	0.367
96	96	0.281
97	97	0.495
98	98	0.304
99	99	0.433

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11267

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102920 Y-79 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005388 (photoreceptor array)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0102919 (retinoblastoma cell line sample)
0102920 (Y-79 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|F5samples=
+|DRA_sample_Accession=CAGE@SAMD00005431
-|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000966,UBERON:0000970,UBERON:0001016,UBERON:0001017,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001802,UBERON:0002050,UBERON:0002104,UBERON:0002346,UBERON:0002532,UBERON:0003056,UBERON:0003071,UBERON:0003072,UBERON:0003075,UBERON:0004121,UBERON:0004128,UBERON:0004456,UBERON:0005085,UBERON:0005291,UBERON:0005388,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007284
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005431
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371
+|accession_numbers=CAGE;DRX007992;DRR008864;DRZ000289;DRZ001674;DRZ011639;DRZ013024
-|ancestors_in_disease_facet=DOID:0050686,DOID:14566,DOID:162,DOID:3093,DOID:4
+|accession_numbers_RNASeq=RNA-Seq;DRX057126;DRR062885;DRZ007961
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255
+|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0102919,FF:0102920
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|expression_enrichment_score=chr14:57272369..57272391,-!p2@OTX2!2.91!819.46!OTX2;;chr2:16080659..16080685,+!p1@MYCN!2.84!690.84!MYCN;;chr19:48325184..48325211,+!p1@CRX!2.74!546.10!CRX;;chr2:182545234..182545252,-!p1@NEUROD1!2.50!317.29!NEUROD1;;chr14:57277178..57277203,-!p1@OTX2!2.36!228.17!OTX2;;chr2:16081912..16081931,+!p2@MYCN!2.24!173.18!MYCN;;chr14:24553835..24553850,-!p1@NRL!2.12!131.15!NRL;;chr13:72441315..72441454,-!p1@DACH1!2.07!225.17!DACH1;;chr19:3772220..3772236,-!p1@RAX2!1.99!95.91!RAX2;;chr12:66218255..66218304,+!p3@HMGA2!1.88!193.88!HMGA2;;chr5:134871645..134871660,-!p1@NEUROG1!1.83!66.52!NEUROG1;;chr12:66218598..66218645,+!p2@HMGA2!1.81!278.58!HMGA2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.32!ISL2;;chr10:69991865..69991870,-!p1@ATOH7!1.79!61.15!ATOH7;;chr2:16080635..16080650,+!p4@MYCN!1.79!60.05!MYCN;;chr14:57277098..57277116,-!p3@OTX2!1.78!59.73!OTX2;;chr18:56940611..56940660,-!p1@RAX!1.74!53.41!RAX;;chr12:66218183..66218209,+!p4@HMGA2!1.73!98.44!HMGA2;;chr16:51185172..51185197,-!p1@SALL1!1.73!52.46!SALL1;;chr12:66218212..66218244,+!p5@HMGA2!1.71!72.05!HMGA2;;chr1:216896752..216896778,-!p1@ESRRG!1.71!50.56!ESRRG;;chr2:16080823..16080836,+!p5@MYCN!1.64!42.19!MYCN;;chr13:72441074..72441172,-!p2@DACH1!1.61!39.98!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.57!39.98!RORB;;chr2:16082155..16082169,+!p3@MYCN!1.57!36.50!MYCN;;chr12:54779511..54779577,-!p5@ZNF385A!1.51!31.44!ZNF385A;;chr11:63684602..63684664,-!p1@RCOR2!1.50!59.89!RCOR2;;chr12:66218573..66218596,+!p7@HMGA2!1.48!42.98!HMGA2;;chr19:3772263..3772274,-!p2@RAX2!1.48!29.07!RAX2;;chr3:52002194..52002250,-!p5@PCBP4!1.47!28.28!PCBP4;;chr3:52001448..52001478,-!p2@PCBP4!1.46!373.54!PCBP4;;chr18:74207147..74207183,-!p1@ZNF516!1.41!72.37!ZNF516;;chr9:139094988..139095012,-!p1@LHX3!1.41!24.49!LHX3;;chr18:56940663..56940691,-!p2@RAX!1.40!24.02!RAX;;chr9:139096968..139096979,-!p2@LHX3!1.37!22.44!LHX3;;chr2:239148671..239148686,-!p1@HES6!1.36!78.22!HES6;;chr15:61521495..61521506,-!p5@RORA!1.36!21.96!RORA;;chr2:45168875..45168916,+!p1@SIX3!1.33!20.23!SIX3;;chr7:1272522..1272537,+!p2@UNCX!1.32!20.07!UNCX;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.76!TCF12;;chr18:55102598..55102623,+!p1@ONECUT2!1.30!18.80!ONECUT2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.33!MLXIPL;;chr12:66218152..66218174,+!p10@HMGA2!1.28!19.59!HMGA2;;chr21:47063625..47063658,+!p1@PCBP3!1.27!76.00!PCBP3;;chr18:74207186..74207204,-!p3@ZNF516!1.27!25.44!ZNF516;;chr7:156803329..156803362,-!p1@MNX1!1.26!17.22!MNX1;;chr1:3569072..3569093,+!p1@TP73!1.25!16.91!TP73;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.75!HIF3A;;chr7:1272500..1272513,+!p1@UNCX!1.25!16.59!UNCX;;chr2:60780753..60780800,-!p1@BCL11A!1.24!79.95!BCL11A;;chr6:20402102..20402152,+!p1@E2F3!1.21!61.63!E2F3;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.33!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!1.21!17.54!PBX1;;chr9:14314131..14314147,-!p2@NFIB!1.20!82.64!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.01!INSM1;;chr1:244214577..244214593,+!p1@ZNF238!1.20!14.85!ZNF238;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.38!ZMAT4;;chr19:20188776..20188826,+!p1@ZNF90!1.18!37.61!ZNF90;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.65!PITX1;;chr1:216896780..216896800,-!p2@ESRRG!1.18!14.06!ESRRG;;chr9:77112225..77112238,+!p2@RORB!1.15!13.12!RORB;;chr2:60780607..60780624,-!p2@BCL11A!1.14!39.50!BCL11A;;chr1:75602043..75602093,+!p1@LHX8!1.13!12.48!LHX8;;chr17:42295777..42295816,-!p7@UBTF!1.12!14.85!UBTF;;chr19:53496768..53496799,-!p1@ZNF702P!1.11!18.33!ZNF702P;;chr15:72102881..72102925,+!p1@NR2E3!1.11!12.01!NR2E3;;chr13:100623375..100623425,-!p1@ZIC5!1.11!12.01!ZIC5;;chr18:55102628..55102646,+!p2@ONECUT2!1.11!11.85!ONECUT2;;chr18:74207227..74207238,-!p5@ZNF516!1.09!11.22!ZNF516;;chr1:221052733..221052749,+!p2@HLX!1.08!14.54!HLX;;chr1:10856694..10856715,-!p3@CASZ1!1.08!10.90!CASZ1;;chr7:96634850..96634874,+!p3@DLX6!1.08!10.90!DLX6;;chr12:54393880..54393962,+!p1@HOXC9!1.08!10.90!HOXC9;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.43!ZNF385A;;chr12:66218378..66218401,+!p6@HMGA2!1.06!16.43!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!1.06!12.96!HOXC4;;chr2:60778035..60778060,-!p4@BCL11A!1.06!12.48!BCL11A;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.43!HMGA2;;chr19:23433144..23433204,-!p1@ZNF724P!1.05!46.77!ZNF724P;;chr1:10856665..10856683,-!p4@CASZ1!1.05!10.27!CASZ1;;chr2:5832508..5832524,+!p1@SOX11!1.05!10.27!SOX11;;chr1:153940354..153940395,+!p1@CREB3L4!1.04!41.24!CREB3L4;;chr12:66218443..66218461,+!p8@HMGA2!1.04!12.80!HMGA2;;chr10:48355030..48355090,+!p1@ZNF488!1.03!12.48!ZNF488;;chr14:21562671..21562702,-!p8@ZNF219!1.03!9.64!ZNF219;;chr8:11561684..11561751,+!p1@GATA4!1.03!9.64!GATA4;;chr1:247171347..247171366,-!p2@ZNF695!1.01!16.91!ZNF695;;chr9:139095030..139095040,-!p4@LHX3!1.01!9.32!LHX3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.01!9.16!ZBED1;;chr19:3772249..3772252,-!p3@RAX2!1.01!9.16!RAX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.43!CSRNP3;;chr19:11750566..11750627,+!p1@ZNF833P!1.00!12.33!ZNF833P;;chr13:100634031..100634045,+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+|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0003056,UBERON:0010316
 |fonse_cell_line=FF:0100255
 |fonse_cell_line_closure=FF:0100255
@@ Line 35: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/retinoblastoma%2520cell%2520line%253aY79.CNhs11267.10475-106I7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10475-106I7
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102920
+|is_a=EFO:0002091;;FF:0000210;;FF:0102920
+|is_obsolete=
+|library_id=CNhs11267
+|library_id_phase_based=2:CNhs11267
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10475
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10475
 |name=retinoblastoma cell line:Y79
 |namespace=FANTOM5
@@ Line 42: / Line 62: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11267,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 56: / Line 79: @@
 |rna_tube_id=106I7
 |rna_weight_ug=36.803
+|rnaseq_library_id=RDhi10069
 |sample_age=2.5
+|sample_category=cell lines
 |sample_cell_catalog=RCB1645
 |sample_cell_line=Y79
@@ Line 69: / Line 94: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.07015879597765e-296!GO:0043231;intracellular membrane-bound organelle;8.14615802294375e-267!GO:0043227;membrane-bound organelle;1.02955126691237e-266!GO:0043226;organelle;3.06917351560252e-264!GO:0043229;intracellular organelle;1.33646017836572e-263!GO:0044422;organelle part;2.46850574754361e-168!GO:0044446;intracellular organelle part;2.68416856160657e-167!GO:0005634;nucleus;9.58696119329958e-153!GO:0005737;cytoplasm;2.94054344503996e-143!GO:0032991;macromolecular complex;1.07587875226351e-119!GO:0044237;cellular metabolic process;1.13284890973889e-115!GO:0044238;primary metabolic process;8.12739273117935e-113!GO:0043170;macromolecule metabolic process;2.89616402841913e-107!GO:0044428;nuclear part;7.7639864162631e-107!GO:0030529;ribonucleoprotein complex;3.03619301361155e-102!GO:0044444;cytoplasmic part;3.98405675710832e-101!GO:0043233;organelle lumen;1.95561233565372e-96!GO:0031974;membrane-enclosed lumen;1.95561233565372e-96!GO:0003723;RNA binding;2.44231276533526e-91!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.19311323609785e-89!GO:0043283;biopolymer metabolic process;1.24667873864398e-80!GO:0010467;gene expression;3.26911901881766e-80!GO:0005739;mitochondrion;3.39351168575549e-74!GO:0006396;RNA processing;7.07690924746536e-72!GO:0003676;nucleic acid binding;5.11996451236419e-66!GO:0031981;nuclear lumen;1.93488284877722e-64!GO:0043234;protein complex;1.04391594132806e-59!GO:0006259;DNA metabolic process;9.0788933753762e-59!GO:0005840;ribosome;8.42057414252555e-55!GO:0016071;mRNA metabolic process;1.36048803272537e-54!GO:0044429;mitochondrial part;1.14327489537337e-51!GO:0016043;cellular component organization and biogenesis;6.51805306308393e-51!GO:0008380;RNA splicing;1.77731643227316e-49!GO:0006412;translation;3.04077189113475e-49!GO:0006397;mRNA processing;1.59387707585004e-48!GO:0016070;RNA metabolic process;3.97734795496729e-48!GO:0003735;structural constituent of ribosome;7.76227355740801e-47!GO:0005515;protein binding;7.76227355740801e-47!GO:0031967;organelle envelope;1.38281237079653e-46!GO:0031975;envelope;3.68599565996687e-46!GO:0043228;non-membrane-bound organelle;7.94497684265401e-44!GO:0043232;intracellular non-membrane-bound organelle;7.94497684265401e-44!GO:0006996;organelle organization and biogenesis;4.72549960811166e-43!GO:0033279;ribosomal subunit;4.4668311571545e-41!GO:0044249;cellular biosynthetic process;2.04849133417818e-40!GO:0005654;nucleoplasm;4.20311678320182e-40!GO:0007049;cell cycle;7.82508492455047e-40!GO:0031090;organelle membrane;9.35086928241227e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.11713566391279e-39!GO:0006974;response to DNA damage stimulus;3.51427671915e-38!GO:0009058;biosynthetic process;9.4374145556053e-37!GO:0033036;macromolecule localization;8.8089478373625e-36!GO:0006281;DNA repair;1.60733253458692e-35!GO:0005681;spliceosome;2.46138559191591e-35!GO:0015031;protein transport;1.10973240986398e-34!GO:0009059;macromolecule biosynthetic process;2.28671362302879e-34!GO:0000166;nucleotide binding;2.75732312994523e-34!GO:0005694;chromosome;6.63189447090817e-34!GO:0065003;macromolecular complex assembly;1.01391927105322e-33!GO:0019538;protein metabolic process;1.19607023488986e-32!GO:0019866;organelle inner membrane;1.63395974600753e-32!GO:0005740;mitochondrial envelope;3.19373549239624e-32!GO:0044451;nucleoplasm part;9.6279168154694e-32!GO:0046907;intracellular transport;2.28170784791755e-31!GO:0008104;protein localization;9.67522981414009e-31!GO:0031966;mitochondrial membrane;2.8466710636938e-30!GO:0022402;cell cycle process;4.3867445721741e-30!GO:0045184;establishment of protein localization;5.25089191599238e-30!GO:0022607;cellular component assembly;7.35987186040011e-30!GO:0044267;cellular protein metabolic process;1.02174229200519e-29!GO:0005743;mitochondrial inner membrane;1.09768452446397e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.48581830248625e-29!GO:0044260;cellular macromolecule metabolic process;2.64875673485116e-29!GO:0044427;chromosomal part;8.18871074369838e-28!GO:0005829;cytosol;2.86184181275855e-27!GO:0000278;mitotic cell cycle;3.32291835542393e-27!GO:0051276;chromosome organization and biogenesis;2.60496474244162e-26!GO:0044445;cytosolic part;2.81933603273505e-25!GO:0006886;intracellular protein transport;2.82811497071397e-25!GO:0005730;nucleolus;7.137312523422e-25!GO:0006260;DNA replication;1.52338795304579e-24!GO:0016462;pyrophosphatase activity;4.33926595504971e-24!GO:0000087;M phase of mitotic cell cycle;4.67842220166616e-24!GO:0051301;cell division;5.152596501826e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;5.4470474576767e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.4470474576767e-24!GO:0017111;nucleoside-triphosphatase activity;7.36234268791452e-24!GO:0044455;mitochondrial membrane part;7.88162750972774e-24!GO:0006119;oxidative phosphorylation;1.41078278571017e-23!GO:0051649;establishment of cellular localization;1.58948114578479e-23!GO:0007067;mitosis;1.69037297692421e-23!GO:0031980;mitochondrial lumen;2.12976371330104e-23!GO:0005759;mitochondrial matrix;2.12976371330104e-23!GO:0009719;response to endogenous stimulus;2.58953023302168e-23!GO:0032553;ribonucleotide binding;3.00189000419518e-23!GO:0032555;purine ribonucleotide binding;3.00189000419518e-23!GO:0051641;cellular localization;7.17140510579318e-23!GO:0022403;cell cycle phase;4.9181401979637e-22!GO:0017076;purine nucleotide binding;5.23256330049723e-22!GO:0005524;ATP binding;1.18195307185435e-21!GO:0016874;ligase activity;2.28778404179194e-21!GO:0015935;small ribosomal subunit;2.3929022658707e-21!GO:0022618;protein-RNA complex assembly;2.3929022658707e-21!GO:0032559;adenyl ribonucleotide binding;3.40222363166222e-21!GO:0015934;large ribosomal subunit;7.99030630481381e-21!GO:0000279;M phase;2.33463241020043e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;7.58106293022682e-20!GO:0030554;adenyl nucleotide binding;1.03538596247676e-19!GO:0006512;ubiquitin cycle;1.42695464608159e-19!GO:0016887;ATPase activity;2.08431906123718e-19!GO:0006457;protein folding;2.85685325928744e-19!GO:0006323;DNA packaging;4.15332942350409e-19!GO:0042254;ribosome biogenesis and assembly;1.61878626320042e-18!GO:0042623;ATPase activity, coupled;1.85607615667469e-18!GO:0000398;nuclear mRNA splicing, via spliceosome;2.68901335243044e-18!GO:0000375;RNA splicing, via transesterification reactions;2.68901335243044e-18!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.68901335243044e-18!GO:0004386;helicase activity;1.11647169194891e-17!GO:0008135;translation factor activity, nucleic acid binding;1.93812429922634e-17!GO:0044453;nuclear membrane part;4.55126918410934e-17!GO:0005746;mitochondrial respiratory chain;6.23034500662835e-17!GO:0031965;nuclear membrane;6.63857114633829e-17!GO:0006403;RNA localization;3.57048900845198e-16!GO:0016604;nuclear body;4.54382633137507e-16!GO:0050657;nucleic acid transport;5.96848289884142e-16!GO:0051236;establishment of RNA localization;5.96848289884142e-16!GO:0050658;RNA transport;5.96848289884142e-16!GO:0044265;cellular macromolecule catabolic process;7.31070017653983e-16!GO:0005643;nuclear pore;1.34903759159172e-15!GO:0005635;nuclear envelope;1.60442332990166e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.87979248260433e-15!GO:0003954;NADH dehydrogenase activity;1.87979248260433e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.87979248260433e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.48337842407599e-15!GO:0015630;microtubule cytoskeleton;2.5647597755627e-15!GO:0005761;mitochondrial ribosome;3.80182761946818e-15!GO:0000313;organellar ribosome;3.80182761946818e-15!GO:0006399;tRNA metabolic process;4.22181751702795e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.50779443345953e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.32957683934491e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.53311742357063e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.42798868530597e-14!GO:0008026;ATP-dependent helicase activity;1.57766261645487e-14!GO:0019941;modification-dependent protein catabolic process;1.694885307551e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.694885307551e-14!GO:0051726;regulation of cell cycle;2.66710893320289e-14!GO:0044257;cellular protein catabolic process;4.41907711819245e-14!GO:0000074;regulation of progression through cell cycle;5.6391748336865e-14!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.39894221618325e-14!GO:0042775;organelle ATP synthesis coupled electron transport;8.08623785153056e-14!GO:0042773;ATP synthesis coupled electron transport;8.08623785153056e-14!GO:0016607;nuclear speck;8.59687938822775e-14!GO:0051028;mRNA transport;9.19836420951958e-14!GO:0012505;endomembrane system;1.08917213255093e-13!GO:0016568;chromatin modification;1.16339103600704e-13!GO:0000785;chromatin;1.3140109913477e-13!GO:0065002;intracellular protein transport across a membrane;1.66218569012114e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.30628104101755e-13!GO:0045271;respiratory chain complex I;2.30628104101755e-13!GO:0005747;mitochondrial respiratory chain complex I;2.30628104101755e-13!GO:0003743;translation initiation factor activity;2.54045312723123e-13!GO:0006364;rRNA processing;4.03619247004671e-13!GO:0006163;purine nucleotide metabolic process;5.07265189243923e-13!GO:0006350;transcription;5.62418862265553e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.62878044860136e-13!GO:0006261;DNA-dependent DNA replication;6.03120750776051e-13!GO:0006605;protein targeting;7.45903316857606e-13!GO:0051082;unfolded protein binding;7.97710727105221e-13!GO:0019222;regulation of metabolic process;9.81460379205698e-13!GO:0009259;ribonucleotide metabolic process;9.87545624161799e-13!GO:0000775;chromosome, pericentric region;1.00891149513925e-12!GO:0006413;translational initiation;1.03295332252156e-12!GO:0008134;transcription factor binding;1.05092299101515e-12!GO:0008565;protein transporter activity;1.22476194131615e-12!GO:0016072;rRNA metabolic process;1.23764273502935e-12!GO:0046930;pore complex;1.28091289624836e-12!GO:0043285;biopolymer catabolic process;1.52578802503316e-12!GO:0006164;purine nucleotide biosynthetic process;1.89626532618264e-12!GO:0009057;macromolecule catabolic process;2.04588275457088e-12!GO:0044248;cellular catabolic process;3.44750106407338e-12!GO:0006333;chromatin assembly or disassembly;4.3288262377031e-12!GO:0051186;cofactor metabolic process;4.73504336402993e-12!GO:0048770;pigment granule;7.09764653264889e-12!GO:0042470;melanosome;7.09764653264889e-12!GO:0006913;nucleocytoplasmic transport;1.27770163594441e-11!GO:0009260;ribonucleotide biosynthetic process;1.27770163594441e-11!GO:0006446;regulation of translational initiation;1.40232295733489e-11!GO:0009150;purine ribonucleotide metabolic process;1.64691277676395e-11!GO:0003677;DNA binding;2.14087454163937e-11!GO:0031323;regulation of cellular metabolic process;2.58948486422562e-11!GO:0051169;nuclear transport;3.69666981755078e-11!GO:0065004;protein-DNA complex assembly;3.80968391071803e-11!GO:0043412;biopolymer modification;6.25971198380101e-11!GO:0009152;purine ribonucleotide biosynthetic process;6.659827957772e-11!GO:0000502;proteasome complex (sensu Eukaryota);6.91223882617037e-11!GO:0030532;small nuclear ribonucleoprotein complex;7.21109219517739e-11!GO:0032774;RNA biosynthetic process;8.27703538403152e-11!GO:0006732;coenzyme metabolic process;9.16783880050364e-11!GO:0010468;regulation of gene expression;1.03421362289814e-10!GO:0006351;transcription, DNA-dependent;1.4029032466461e-10!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.69765541920223e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.2839334977621e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.2839334977621e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.2839334977621e-10!GO:0030163;protein catabolic process;2.39438892871385e-10!GO:0003697;single-stranded DNA binding;2.77144396297739e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.07088599561445e-10!GO:0043038;amino acid activation;3.34562209863466e-10!GO:0006418;tRNA aminoacylation for protein translation;3.34562209863466e-10!GO:0043039;tRNA aminoacylation;3.34562209863466e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.75599398535688e-10!GO:0008094;DNA-dependent ATPase activity;3.80533327237986e-10!GO:0050794;regulation of cellular process;3.85993556575552e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.93974410999548e-10!GO:0016779;nucleotidyltransferase activity;9.57360475187686e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.15418426470102e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.18199924711721e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37436182232568e-09!GO:0009141;nucleoside triphosphate metabolic process;1.41269435410935e-09!GO:0016740;transferase activity;1.61911623617408e-09!GO:0005819;spindle;1.62963892478422e-09!GO:0003712;transcription cofactor activity;1.65606882175334e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.88164861951502e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.88164861951502e-09!GO:0043566;structure-specific DNA binding;1.88438360962612e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.83262011870069e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.91941644178043e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.91941644178043e-09!GO:0019829;cation-transporting ATPase activity;2.93137886293795e-09!GO:0005657;replication fork;3.13389256843233e-09!GO:0000075;cell cycle checkpoint;4.03138316911882e-09!GO:0015986;ATP synthesis coupled proton transport;5.03842528932511e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.03842528932511e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.11116571183077e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.11116571183077e-09!GO:0016741;transferase activity, transferring one-carbon groups;6.78185424919178e-09!GO:0045449;regulation of transcription;7.43734041312046e-09!GO:0006464;protein modification process;8.0406967941516e-09!GO:0000245;spliceosome assembly;8.08982615373816e-09!GO:0005667;transcription factor complex;8.32083197224495e-09!GO:0006366;transcription from RNA polymerase II promoter;9.49528189093801e-09!GO:0008639;small protein conjugating enzyme activity;1.08148869359184e-08!GO:0008168;methyltransferase activity;1.17316431665198e-08!GO:0016192;vesicle-mediated transport;1.19358310940875e-08!GO:0005813;centrosome;1.19766651251822e-08!GO:0009060;aerobic respiration;1.43675250109865e-08!GO:0017038;protein import;1.44357219188147e-08!GO:0003682;chromatin binding;1.54764216394248e-08!GO:0043687;post-translational protein modification;1.89339911916399e-08!GO:0048193;Golgi vesicle transport;1.90116180236526e-08!GO:0044432;endoplasmic reticulum part;1.9220545595208e-08!GO:0004842;ubiquitin-protein ligase activity;2.14498749842361e-08!GO:0003899;DNA-directed RNA polymerase activity;2.57880826169108e-08!GO:0005783;endoplasmic reticulum;2.71239014899937e-08!GO:0045333;cellular respiration;2.89114739966988e-08!GO:0005815;microtubule organizing center;2.9540398893092e-08!GO:0032446;protein modification by small protein conjugation;3.46968653011547e-08!GO:0006302;double-strand break repair;4.62883277302299e-08!GO:0006355;regulation of transcription, DNA-dependent;4.87242919162171e-08!GO:0007051;spindle organization and biogenesis;4.96550570229681e-08!GO:0046034;ATP metabolic process;5.25204871586741e-08!GO:0043623;cellular protein complex assembly;6.0033058695447e-08!GO:0006461;protein complex assembly;6.66825994466039e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.04445832869212e-08!GO:0019787;small conjugating protein ligase activity;7.74688963949502e-08!GO:0006754;ATP biosynthetic process;7.74688963949502e-08!GO:0006753;nucleoside phosphate metabolic process;7.74688963949502e-08!GO:0009117;nucleotide metabolic process;7.84108801084694e-08!GO:0005874;microtubule;7.94141465015515e-08!GO:0016567;protein ubiquitination;1.01449597705753e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.3514277182213e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.58270244903637e-07!GO:0009055;electron carrier activity;2.09901945552897e-07!GO:0016881;acid-amino acid ligase activity;2.7286068156258e-07!GO:0006752;group transfer coenzyme metabolic process;3.38730104128857e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.56779411506652e-07!GO:0051188;cofactor biosynthetic process;3.94323255983539e-07!GO:0003724;RNA helicase activity;4.27707205650494e-07!GO:0005794;Golgi apparatus;4.32831424827046e-07!GO:0007017;microtubule-based process;4.92698561351861e-07!GO:0045259;proton-transporting ATP synthase complex;6.07141695305077e-07!GO:0007059;chromosome segregation;6.73038789952433e-07!GO:0016363;nuclear matrix;8.19593224977031e-07!GO:0007005;mitochondrion organization and biogenesis;8.55046348271166e-07!GO:0009108;coenzyme biosynthetic process;8.96104735291234e-07!GO:0006310;DNA recombination;1.15673261285521e-06!GO:0031497;chromatin assembly;1.41529040326526e-06!GO:0016853;isomerase activity;1.48520289503827e-06!GO:0006084;acetyl-CoA metabolic process;1.55109492276504e-06!GO:0006099;tricarboxylic acid cycle;1.66964880342532e-06!GO:0046356;acetyl-CoA catabolic process;1.66964880342532e-06!GO:0000776;kinetochore;1.94267755965738e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.05499697762882e-06!GO:0008033;tRNA processing;2.56602638894883e-06!GO:0050789;regulation of biological process;2.64275491368178e-06!GO:0006334;nucleosome assembly;2.67403708565632e-06!GO:0051329;interphase of mitotic cell cycle;2.96867038436343e-06!GO:0044452;nucleolar part;3.8104410851757e-06!GO:0003684;damaged DNA binding;4.06886100776388e-06!GO:0045786;negative regulation of progression through cell cycle;4.23173061869889e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.33616968905483e-06!GO:0000151;ubiquitin ligase complex;5.08212245554534e-06!GO:0051427;hormone receptor binding;6.33213129098307e-06!GO:0006613;cotranslational protein targeting to membrane;6.72372213829399e-06!GO:0051168;nuclear export;7.11987379180213e-06!GO:0005789;endoplasmic reticulum membrane;8.17932453268595e-06!GO:0006383;transcription from RNA polymerase III promoter;9.10171496002915e-06!GO:0051325;interphase;9.22088820959558e-06!GO:0009165;nucleotide biosynthetic process;1.31114995335798e-05!GO:0003678;DNA helicase activity;1.31114995335798e-05!GO:0051170;nuclear import;1.32238731602482e-05!GO:0035257;nuclear hormone receptor binding;1.37887009605838e-05!GO:0006606;protein import into nucleus;1.86273564959459e-05!GO:0048475;coated membrane;2.09717731701373e-05!GO:0030117;membrane coat;2.09717731701373e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.15079747882628e-05!GO:0009109;coenzyme catabolic process;2.22474903528603e-05!GO:0003713;transcription coactivator activity;2.47726101826055e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.54605980082179e-05!GO:0006414;translational elongation;2.55023755890267e-05!GO:0009056;catabolic process;2.65437240861135e-05!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;2.72301777429509e-05!GO:0000314;organellar small ribosomal subunit;2.76229481947646e-05!GO:0005763;mitochondrial small ribosomal subunit;2.76229481947646e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.01927203785215e-05!GO:0006338;chromatin remodeling;3.02948275720964e-05!GO:0000059;protein import into nucleus, docking;4.10356009707793e-05!GO:0006352;transcription initiation;4.44842761314343e-05!GO:0006270;DNA replication initiation;4.72475994239824e-05!GO:0008654;phospholipid biosynthetic process;5.14228698409732e-05!GO:0051187;cofactor catabolic process;5.14228698409732e-05!GO:0000228;nuclear chromosome;5.41503829714888e-05!GO:0032508;DNA duplex unwinding;5.41503829714888e-05!GO:0032392;DNA geometric change;5.41503829714888e-05!GO:0008186;RNA-dependent ATPase activity;5.46786601592997e-05!GO:0005793;ER-Golgi intermediate compartment;6.39487326797623e-05!GO:0005762;mitochondrial large ribosomal subunit;6.6726433597567e-05!GO:0000315;organellar large ribosomal subunit;6.6726433597567e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.17446762070848e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;7.25534473172483e-05!GO:0043021;ribonucleoprotein binding;7.59024871066209e-05!GO:0003729;mRNA binding;7.63848803834859e-05!GO:0016251;general RNA polymerase II transcription factor activity;7.80646791708676e-05!GO:0051052;regulation of DNA metabolic process;8.57862174287932e-05!GO:0007052;mitotic spindle organization and biogenesis;8.91790022283131e-05!GO:0006284;base-excision repair;8.99751525102867e-05!GO:0007093;mitotic cell cycle checkpoint;9.57159586479664e-05!GO:0043681;protein import into mitochondrion;9.86548685909536e-05!GO:0007088;regulation of mitosis;0.000101249548118779!GO:0003714;transcription corepressor activity;0.000112801904958971!GO:0016564;transcription repressor activity;0.000120364360614132!GO:0006793;phosphorus metabolic process;0.000134973461467203!GO:0006796;phosphate metabolic process;0.000134973461467203!GO:0004527;exonuclease activity;0.000151504236273856!GO:0006268;DNA unwinding during replication;0.000167419320241996!GO:0051087;chaperone binding;0.000169042587700703!GO:0004004;ATP-dependent RNA helicase activity;0.000174943561202468!GO:0006839;mitochondrial transport;0.000183104186983611!GO:0043596;nuclear replication fork;0.000191318571134428!GO:0045454;cell redox homeostasis;0.000207555027703258!GO:0003690;double-stranded DNA binding;0.000207555027703258!GO:0007006;mitochondrial membrane organization and biogenesis;0.00021825234076963!GO:0005876;spindle microtubule;0.000234896857702196!GO:0003702;RNA polymerase II transcription factor activity;0.000237422984494181!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000250087578107704!GO:0004518;nuclease activity;0.000251383277920797!GO:0016787;hydrolase activity;0.000256480941723887!GO:0006405;RNA export from nucleus;0.000279747313269304!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000291411514620234!GO:0005684;U2-dependent spliceosome;0.000296506844043336!GO:0046489;phosphoinositide biosynthetic process;0.00030174822200966!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000314520423551888!GO:0031124;mRNA 3'-end processing;0.000333964202603673!GO:0000910;cytokinesis;0.000341278489138705!GO:0030880;RNA polymerase complex;0.000342602352411688!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000352893296458074!GO:0005768;endosome;0.000355673872867827!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000391050607337876!GO:0016859;cis-trans isomerase activity;0.000394594379881779!GO:0006289;nucleotide-excision repair;0.000397567336814147!GO:0016563;transcription activator activity;0.000402795367021453!GO:0008022;protein C-terminus binding;0.000405144700680703!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000434756673847926!GO:0015631;tubulin binding;0.000454453612395534!GO:0046474;glycerophospholipid biosynthetic process;0.000460973555183066!GO:0006378;mRNA polyadenylation;0.00046877581802572!GO:0000049;tRNA binding;0.000498654385157513!GO:0031988;membrane-bound vesicle;0.00052781218155447!GO:0000725;recombinational repair;0.000540383265364479!GO:0000724;double-strand break repair via homologous recombination;0.000540383265364479!GO:0005637;nuclear inner membrane;0.000541149789437533!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000554771778933176!GO:0016310;phosphorylation;0.000562056034337546!GO:0008276;protein methyltransferase activity;0.000562634056557196!GO:0005788;endoplasmic reticulum lumen;0.000636887487962574!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000636887487962574!GO:0015399;primary active transmembrane transporter activity;0.000636887487962574!GO:0043601;nuclear replisome;0.000709392470265607!GO:0030894;replisome;0.000709392470265607!GO:0031324;negative regulation of cellular metabolic process;0.000734013304054936!GO:0004576;oligosaccharyl transferase activity;0.000734013304054936!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000734013304054936!GO:0005758;mitochondrial intermembrane space;0.000737299760554461!GO:0008250;oligosaccharyl transferase complex;0.000750163245773419!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00075224188129346!GO:0000428;DNA-directed RNA polymerase complex;0.00075224188129346!GO:0016023;cytoplasmic membrane-bound vesicle;0.000754763496893834!GO:0005798;Golgi-associated vesicle;0.000777576245411364!GO:0022890;inorganic cation transmembrane transporter activity;0.000814903878301933!GO:0007010;cytoskeleton organization and biogenesis;0.000816484622935188!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.000827055412894455!GO:0031982;vesicle;0.000836100527338058!GO:0051920;peroxiredoxin activity;0.000838556064963343!GO:0004674;protein serine/threonine kinase activity;0.000849989673517019!GO:0031123;RNA 3'-end processing;0.000849989673517019!GO:0031570;DNA integrity checkpoint;0.00085669218565747!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000862591181074201!GO:0006144;purine base metabolic process;0.000875707096066626!GO:0032259;methylation;0.000907072451848465!GO:0003924;GTPase activity;0.000940094103790742!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000945376542763015!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000945376542763015!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000945376542763015!GO:0006626;protein targeting to mitochondrion;0.000954022589505829!GO:0045045;secretory pathway;0.000976987401941471!GO:0000922;spindle pole;0.00102321238687395!GO:0031970;organelle envelope lumen;0.00110596623297574!GO:0030120;vesicle coat;0.00110596623297574!GO:0030662;coated vesicle membrane;0.00110596623297574!GO:0044450;microtubule organizing center part;0.00116473209159215!GO:0044431;Golgi apparatus part;0.00117122642835342!GO:0006612;protein targeting to membrane;0.00117234135702855!GO:0048500;signal recognition particle;0.00117330769767648!GO:0031410;cytoplasmic vesicle;0.00120575670204998!GO:0044440;endosomal part;0.00126690237488145!GO:0010008;endosome membrane;0.00126690237488145!GO:0006818;hydrogen transport;0.00129243377134674!GO:0005525;GTP binding;0.00136988804196036!GO:0008312;7S RNA binding;0.00137459537021202!GO:0005669;transcription factor TFIID complex;0.0013755176307138!GO:0015992;proton transport;0.00138998171118095!GO:0042393;histone binding;0.00143794970788078!GO:0000726;non-recombinational repair;0.00153111411889547!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00166049905558027!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00166049905558027!GO:0031072;heat shock protein binding;0.00169738977726608!GO:0005839;proteasome core complex (sensu Eukaryota);0.00176348433880199!GO:0000096;sulfur amino acid metabolic process;0.00176824135905774!GO:0000819;sister chromatid segregation;0.00181747879626348!GO:0015980;energy derivation by oxidation of organic compounds;0.00182211134100065!GO:0006402;mRNA catabolic process;0.00184380650442825!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00185128058085137!GO:0000178;exosome (RNase complex);0.00187803465248661!GO:0007050;cell cycle arrest;0.00194628556333556!GO:0000339;RNA cap binding;0.00198723860361756!GO:0008652;amino acid biosynthetic process;0.00199345992222003!GO:0006730;one-carbon compound metabolic process;0.00204163358896101!GO:0046128;purine ribonucleoside metabolic process;0.0021328072783211!GO:0042278;purine nucleoside metabolic process;0.0021328072783211!GO:0035258;steroid hormone receptor binding;0.00213567004231062!GO:0008270;zinc ion binding;0.00215393398204167!GO:0043284;biopolymer biosynthetic process;0.00222024878200117!GO:0009892;negative regulation of metabolic process;0.00227618437938598!GO:0000792;heterochromatin;0.00227618437938598!GO:0000070;mitotic sister chromatid segregation;0.00231923643126607!GO:0003711;transcription elongation regulator activity;0.00233142931123477!GO:0032200;telomere organization and biogenesis;0.00234477989124707!GO:0000723;telomere maintenance;0.00234477989124707!GO:0009116;nucleoside metabolic process;0.0023670554568593!GO:0016481;negative regulation of transcription;0.0024468803865745!GO:0005663;DNA replication factor C complex;0.00265314004988535!GO:0043631;RNA polyadenylation;0.00267518414698581!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00269296077149721!GO:0018196;peptidyl-asparagine modification;0.00273642476266107!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00273642476266107!GO:0009112;nucleobase metabolic process;0.00273899695518404!GO:0006611;protein export from nucleus;0.00276534045463227!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00298508493091983!GO:0045047;protein targeting to ER;0.00298508493091983!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00300715759421515!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00300715759421515!GO:0015002;heme-copper terminal oxidase activity;0.00300715759421515!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00300715759421515!GO:0004129;cytochrome-c oxidase activity;0.00300715759421515!GO:0016272;prefoldin complex;0.00308712313639105!GO:0000793;condensed chromosome;0.00317357328347629!GO:0006220;pyrimidine nucleotide metabolic process;0.00321444811569659!GO:0016584;nucleosome positioning;0.00323133569793549!GO:0008139;nuclear localization sequence binding;0.00328911450211926!GO:0006007;glucose catabolic process;0.00338506041606735!GO:0016790;thiolester hydrolase activity;0.00344557173440635!GO:0009124;nucleoside monophosphate biosynthetic process;0.00351062866172519!GO:0009123;nucleoside monophosphate metabolic process;0.00351062866172519!GO:0006497;protein amino acid lipidation;0.00351062866172519!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00361118281802099!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00363981206038066!GO:0046467;membrane lipid biosynthetic process;0.00370410166674252!GO:0019899;enzyme binding;0.00375665620001777!GO:0003887;DNA-directed DNA polymerase activity;0.00376351572567493!GO:0004003;ATP-dependent DNA helicase activity;0.00388469231039968!GO:0006595;polyamine metabolic process;0.00402667225623957!GO:0004298;threonine endopeptidase activity;0.00405885869939423!GO:0019783;small conjugating protein-specific protease activity;0.00412378197421862!GO:0030521;androgen receptor signaling pathway;0.00415193051510798!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00420152346344944!GO:0000287;magnesium ion binding;0.00420152346344944!GO:0005048;signal sequence binding;0.00422849178548377!GO:0006401;RNA catabolic process;0.00434882309389496!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00447684976438199!GO:0044454;nuclear chromosome part;0.00447720683361844!GO:0006505;GPI anchor metabolic process;0.00453814348353455!GO:0006506;GPI anchor biosynthetic process;0.00461279087664354!GO:0000077;DNA damage checkpoint;0.00465996361454496!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00466484444462871!GO:0007021;tubulin folding;0.00468548778304056!GO:0006541;glutamine metabolic process;0.00473459574427759!GO:0032561;guanyl ribonucleotide binding;0.00473459574427759!GO:0019001;guanyl nucleotide binding;0.00473459574427759!GO:0051297;centrosome organization and biogenesis;0.00473459574427759!GO:0031023;microtubule organizing center organization and biogenesis;0.00473459574427759!GO:0008287;protein serine/threonine phosphatase complex;0.0048092298261124!GO:0042770;DNA damage response, signal transduction;0.00482225407225597!GO:0007004;telomere maintenance via telomerase;0.00487103758879033!GO:0003746;translation elongation factor activity;0.00493128136340597!GO:0008017;microtubule binding;0.00500194822953361!GO:0030384;phosphoinositide metabolic process;0.00503700773291977!GO:0004843;ubiquitin-specific protease activity;0.00524791144374075!GO:0042054;histone methyltransferase activity;0.00537120158791766!GO:0009451;RNA modification;0.0053735965136433!GO:0000097;sulfur amino acid biosynthetic process;0.00545885264865534!GO:0046483;heterocycle metabolic process;0.00574429029151691!GO:0040029;regulation of gene expression, epigenetic;0.00581769831043042!GO:0009303;rRNA transcription;0.00587923685134827!GO:0005875;microtubule associated complex;0.00600126561072631!GO:0006376;mRNA splice site selection;0.00604973924943941!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00604973924943941!GO:0004221;ubiquitin thiolesterase activity;0.00605769752287038!GO:0065007;biological regulation;0.00612940091919574!GO:0048487;beta-tubulin binding;0.00617969964209168!GO:0000082;G1/S transition of mitotic cell cycle;0.00618114256795999!GO:0051287;NAD binding;0.00621477636204292!GO:0000786;nucleosome;0.00632443694344903!GO:0004532;exoribonuclease activity;0.00644210917779789!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00644210917779789!GO:0043414;biopolymer methylation;0.00653201689263897!GO:0000209;protein polyubiquitination;0.00673715988225724!GO:0030137;COPI-coated vesicle;0.00689713406452395!GO:0009119;ribonucleoside metabolic process;0.00692003674629478!GO:0006891;intra-Golgi vesicle-mediated transport;0.0070991813399722!GO:0006400;tRNA modification;0.00713771590161156!GO:0005770;late endosome;0.00729152404500306!GO:0043492;ATPase activity, coupled to movement of substances;0.00756377492126869!GO:0016407;acetyltransferase activity;0.00762653316390179!GO:0005832;chaperonin-containing T-complex;0.00763005838475542!GO:0008408;3'-5' exonuclease activity;0.00799133575395714!GO:0006266;DNA ligation;0.00822532107493912!GO:0031968;organelle outer membrane;0.00825799615830021!GO:0005741;mitochondrial outer membrane;0.00829728042307281!GO:0009161;ribonucleoside monophosphate metabolic process;0.00839967862093115!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00839967862093115!GO:0006275;regulation of DNA replication;0.00841986828303344!GO:0008170;N-methyltransferase activity;0.00883335967578469!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00885171208016287!GO:0006520;amino acid metabolic process;0.00890379044262565!GO:0006301;postreplication repair;0.00911510225558575!GO:0042158;lipoprotein biosynthetic process;0.00912367058421433!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0091733435342596!GO:0019867;outer membrane;0.00928301690001099!GO:0005658;alpha DNA polymerase:primase complex;0.00952042641265322!GO:0033170;DNA-protein loading ATPase activity;0.00989938057063996!GO:0003689;DNA clamp loader activity;0.00989938057063996!GO:0016585;chromatin remodeling complex;0.0102380612005414!GO:0016279;protein-lysine N-methyltransferase activity;0.0104410197466883!GO:0018024;histone-lysine N-methyltransferase activity;0.0104410197466883!GO:0016278;lysine N-methyltransferase activity;0.0104410197466883!GO:0048471;perinuclear region of cytoplasm;0.0104777564856027!GO:0030518;steroid hormone receptor signaling pathway;0.0107163816251913!GO:0000139;Golgi membrane;0.0107733908464008!GO:0051539;4 iron, 4 sulfur cluster binding;0.0111501969059555!GO:0006096;glycolysis;0.0111501969059555!GO:0035267;NuA4 histone acetyltransferase complex;0.0113485338097629!GO:0006303;double-strand break repair via nonhomologous end joining;0.0114654135502717!GO:0030867;rough endoplasmic reticulum membrane;0.0120296745331777!GO:0006091;generation of precursor metabolites and energy;0.0120296745331777!GO:0000152;nuclear ubiquitin ligase complex;0.0128072714691303!GO:0003756;protein disulfide isomerase activity;0.0128471605865662!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0128471605865662!GO:0006650;glycerophospholipid metabolic process;0.013050342073874!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0131838695014951!GO:0005869;dynactin complex;0.0136208015925841!GO:0030663;COPI coated vesicle membrane;0.0137758832556507!GO:0030126;COPI vesicle coat;0.0137758832556507!GO:0043189;H4/H2A histone acetyltransferase complex;0.0139235631232006!GO:0008180;signalosome;0.0142670164389695!GO:0031577;spindle checkpoint;0.0147127528406647!GO:0008536;Ran GTPase binding;0.0147391334344905!GO:0000781;chromosome, telomeric region;0.0147934657619192!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0147934657619192!GO:0010257;NADH dehydrogenase complex assembly;0.0147934657619192!GO:0033108;mitochondrial respiratory chain complex assembly;0.0147934657619192!GO:0030496;midbody;0.0148159108486416!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0148602162752739!GO:0045039;protein import into mitochondrial inner membrane;0.0148602162752739!GO:0008610;lipid biosynthetic process;0.0151988491285668!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0152549301498137!GO:0043624;cellular protein complex disassembly;0.0152766409273065!GO:0046914;transition metal ion binding;0.0158156029244669!GO:0043022;ribosome binding;0.0161368781269799!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0170415375957716!GO:0008601;protein phosphatase type 2A regulator activity;0.0170415375957716!GO:0046966;thyroid hormone receptor binding;0.0180644257007205!GO:0006406;mRNA export from nucleus;0.0181303036393092!GO:0005652;nuclear lamina;0.0182434215556053!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0183761405506309!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0183761405506309!GO:0009126;purine nucleoside monophosphate metabolic process;0.0183761405506309!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0183761405506309!GO:0042809;vitamin D receptor binding;0.0186825199036979!GO:0005487;nucleocytoplasmic transporter activity;0.0188459814648295!GO:0050662;coenzyme binding;0.0188872641868536!GO:0008097;5S rRNA binding;0.0188933935935762!GO:0051246;regulation of protein metabolic process;0.0189143680457385!GO:0019752;carboxylic acid metabolic process;0.0191213138891911!GO:0051053;negative regulation of DNA metabolic process;0.0191213138891911!GO:0030118;clathrin coat;0.0191213138891911!GO:0000123;histone acetyltransferase complex;0.0193014480654815!GO:0016491;oxidoreductase activity;0.0196021990649615!GO:0009113;purine base biosynthetic process;0.0197699111676028!GO:0005769;early endosome;0.0203806239484069!GO:0022884;macromolecule transmembrane transporter activity;0.0204605241873675!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0204605241873675!GO:0030176;integral to endoplasmic reticulum membrane;0.0208882167860822!GO:0006082;organic acid metabolic process;0.0211958317842846!GO:0005881;cytoplasmic microtubule;0.0212190180720736!GO:0009262;deoxyribonucleotide metabolic process;0.0217330702357496!GO:0051540;metal cluster binding;0.021971832062077!GO:0051536;iron-sulfur cluster binding;0.021971832062077!GO:0007018;microtubule-based movement;0.0222150340746855!GO:0000119;mediator complex;0.0231335710788068!GO:0004722;protein serine/threonine phosphatase activity;0.0235236180081903!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0237039460389016!GO:0033116;ER-Golgi intermediate compartment membrane;0.0239157926204249!GO:0004523;ribonuclease H activity;0.0240044422819563!GO:0008320;protein transmembrane transporter activity;0.0243133588943235!GO:0032039;integrator complex;0.0243741602106565!GO:0047485;protein N-terminus binding;0.0251546364729157!GO:0001832;blastocyst growth;0.0258280545031082!GO:0043130;ubiquitin binding;0.026486874123213!GO:0032182;small conjugating protein binding;0.026486874123213!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0265219610950723!GO:0055083;monovalent inorganic anion homeostasis;0.0265219610950723!GO:0055064;chloride ion homeostasis;0.0265219610950723!GO:0030644;cellular chloride ion homeostasis;0.0265219610950723!GO:0009081;branched chain family amino acid metabolic process;0.0268351690478353!GO:0051252;regulation of RNA metabolic process;0.0269229266345058!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0271896177211149!GO:0005885;Arp2/3 protein complex;0.0274625770058687!GO:0000062;acyl-CoA binding;0.0275828027273652!GO:0031536;positive regulation of exit from mitosis;0.0277279374332906!GO:0006278;RNA-dependent DNA replication;0.0277667990737018!GO:0005784;translocon complex;0.0278628235669162!GO:0050811;GABA receptor binding;0.0285173161157461!GO:0032984;macromolecular complex disassembly;0.0291466446151096!GO:0006695;cholesterol biosynthetic process;0.0293493318294525!GO:0000159;protein phosphatase type 2A complex;0.0293736328465845!GO:0000118;histone deacetylase complex;0.0297995384602264!GO:0007096;regulation of exit from mitosis;0.0301211074968308!GO:0010458;exit from mitosis;0.0301211074968308!GO:0000175;3'-5'-exoribonuclease activity;0.030797489790121!GO:0022411;cellular component disassembly;0.0312878976939026!GO:0046365;monosaccharide catabolic process;0.0314623932278678!GO:0000930;gamma-tubulin complex;0.0315498709952552!GO:0006519;amino acid and derivative metabolic process;0.031742876643092!GO:0005844;polysome;0.0320183814793102!GO:0009066;aspartate family amino acid metabolic process;0.032312028682358!GO:0006221;pyrimidine nucleotide biosynthetic process;0.032312028682358!GO:0042706;eye photoreceptor cell fate commitment;0.0327769563935449!GO:0046552;photoreceptor cell fate commitment;0.0327769563935449!GO:0043174;nucleoside salvage;0.0327915234088969!GO:0006166;purine ribonucleoside salvage;0.0327915234088969!GO:0043101;purine salvage;0.0327915234088969!GO:0005814;centriole;0.0328771676973978!GO:0045947;negative regulation of translational initiation;0.0330128692319805!GO:0030145;manganese ion binding;0.0335904094356818!GO:0019206;nucleoside kinase activity;0.0337161514379519!GO:0030119;AP-type membrane coat adaptor complex;0.0341233083293521!GO:0046112;nucleobase biosynthetic process;0.0343676139908115!GO:0008143;poly(A) binding;0.0346080163372758!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0351219897952556!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0358817834319552!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0358817834319552!GO:0016126;sterol biosynthetic process;0.0363682919516844!GO:0017134;fibroblast growth factor binding;0.036458963779991!GO:0043241;protein complex disassembly;0.0375667330489004!GO:0045502;dynein binding;0.0375808127036972!GO:0005732;small nucleolar ribonucleoprotein complex;0.0377809497659688!GO:0031902;late endosome membrane;0.0385278748865399!GO:0042791;5S class rRNA transcription;0.040103012474685!GO:0000127;transcription factor TFIIIC complex;0.040103012474685!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.040103012474685!GO:0000731;DNA synthesis during DNA repair;0.0401333376044919!GO:0004815;aspartate-tRNA ligase activity;0.0406252052901711!GO:0006422;aspartyl-tRNA aminoacylation;0.0406252052901711!GO:0016835;carbon-oxygen lyase activity;0.0407297315518063!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0411237186972842!GO:0046164;alcohol catabolic process;0.0415202581962244!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0415301962932275!GO:0005666;DNA-directed RNA polymerase III complex;0.0415301962932275!GO:0005521;lamin binding;0.0416074287902668!GO:0005905;coated pit;0.0416074287902668!GO:0009067;aspartate family amino acid biosynthetic process;0.0432935176434245!GO:0004239;methionyl aminopeptidase activity;0.0435707961024632!GO:0030131;clathrin adaptor complex;0.0439480667483124!GO:0007098;centrosome cycle;0.0444597179765636!GO:0030522;intracellular receptor-mediated signaling pathway;0.0444597179765636!GO:0006607;NLS-bearing substrate import into nucleus;0.0450302303509434!GO:0006189;'de novo' IMP biosynthetic process;0.0453213791761588!GO:0006188;IMP biosynthetic process;0.0453213791761588!GO:0046040;IMP metabolic process;0.0453213791761588!GO:0005689;U12-dependent spliceosome;0.0454736392827635!GO:0030134;ER to Golgi transport vesicle;0.0454736392827635!GO:0009304;tRNA transcription;0.0454736392827635!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0468964658690092!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0472423412449992!GO:0042026;protein refolding;0.0476791880083231!GO:0019104;DNA N-glycosylase activity;0.0477550885466238!GO:0005680;anaphase-promoting complex;0.0477718073452016!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0481100109603343!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0492116064306087!GO:0001824;blastocyst development;0.0492389350251977!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0495652207294617!GO:0016301;kinase activity;0.0495658165944285!GO:0019320;hexose catabolic process;0.0495875247466605
 |sample_id=10475
 |sample_note=
@@ Line 76: / Line 102: @@
 |sample_tissue=eye
 |top_motifs=CRX:5.34024838077;PITX1..3:3.11970963531;VSX1,2:3.07597013701;BREu{core}:2.92601712701;NFY{A,B,C}:2.80200629733;TFDP1:2.46842749033;NANOG:2.44989885002;E2F1..5:2.17523875651;FOXP1:2.16948487994;LHX3,4:2.1268292804;TOPORS:1.97967488896;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.94830684204;POU1F1:1.90580835263;HOX{A6,A7,B6,B7}:1.885980952;NRF1:1.76024326415;ZNF143:1.7451612306;NKX2-3_NKX2-5:1.63546892954;BPTF:1.61019443039;YY1:1.56240619418;AHR_ARNT_ARNT2:1.51212194801;RREB1:1.472179173;TEF:1.44237192396;NKX6-1,2:1.40636531325;NKX2-1,4:1.22740468028;POU6F1:1.2268356829;ADNP_IRX_SIX_ZHX:1.21921322652;GFI1:1.20744127399;PRRX1,2:1.20121391087;EVI1:1.19502653013;FOXM1:1.19016243262;CDX1,2,4:1.14117759928;LEF1_TCF7_TCF7L1,2:1.06475525624;PBX1:1.05014380055;TAL1_TCF{3,4,12}:1.05007074721;STAT5{A,B}:1.03068097029;ALX1:1.02795314112;OCT4_SOX2{dimer}:0.975671362925;FOXQ1:0.968567820658;PATZ1:0.941806232354;MYB:0.933687852475;ZBTB16:0.911936833792;ELK1,4_GABP{A,B1}:0.892043063693;ARID5B:0.876945096116;FOXA2:0.869282996796;IKZF2:0.85578456984;NR6A1:0.852559111571;PAX3,7:0.849716476383;MYOD1:0.813216701152;PAX8:0.807125830335;RBPJ:0.805267490794;RFX2..5_RFXANK_RFXAP:0.803767701465;RORA:0.799681728499;ZNF384:0.798660549584;RFX1:0.780635106355;PAX1,9:0.753510844279;HOX{A4,D4}:0.745280190967;ONECUT1,2:0.725531331671;HOX{A5,B5}:0.701537436002;SOX{8,9,10}:0.689225345022;POU3F1..4:0.68641062557;ESRRA:0.680575130592;TP53:0.639334007059;ZFP161:0.577597490154;FOX{F1,F2,J1}:0.521427986574;HSF1,2:0.484062424744;SOX17:0.460682227518;PAX5:0.406051661801;KLF4:0.359916974036;FOXD3:0.354550010316;NR1H4:0.347418515392;FOX{I1,J2}:0.305146068818;LMO2:0.262424389223;HOXA9_MEIS1:0.251479193066;XCPE1{core}:0.224033957705;HIC1:0.215246646319;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.212164840026;SOX2:0.205539098943;AIRE:0.20176025964;ATF4:0.194456778531;FOXP3:0.184753739363;REST:0.172374427194;POU2F1..3:0.14714766253;CDC5L:0.141418358475;ZNF423:0.128111953269;CUX2:0.120586523876;bHLH_family:0.0953173325019;TFAP2B:0.0813398347562;SP1:0.0699212106632;NR5A1,2:0.0597599306493;EN1,2:0.0507530244051;MZF1:0.0484205718729;PAX6:0.0482378168191;GATA6:0.0267511875535;HNF1A:0.0214390768141;MED-1{core}:0.0208379063128;ZIC1..3:0.0159465914778;TGIF1:0.0143331832831;GATA4:-0.0239962186832;CREB1:-0.0291727532811;ZEB1:-0.0371340002023;SNAI1..3:-0.0418225594973;GTF2A1,2:-0.0656620627627;MYBL2:-0.104753456939;MEF2{A,B,C,D}:-0.124258145255;SOX5:-0.146417781802;EGR1..3:-0.175010737679;PDX1:-0.199076555212;UFEwm:-0.2131005781;STAT1,3:-0.216940052687;NKX2-2,8:-0.234994540143;HMGA1,2:-0.24240140256;MTE{core}:-0.274005471382;PAX4:-0.282786196449;TLX2:-0.299444056938;JUN:-0.31201709525;FOXL1:-0.314493347063;ATF5_CREB3:-0.320413969584;NFIL3:-0.353486701769;GTF2I:-0.382845556282;HNF4A_NR2F1,2:-0.40845441648;RXR{A,B,G}:-0.480820350879;POU5F1:-0.491319648815;FOX{D1,D2}:-0.50736367506;ALX4:-0.508451794728;ATF2:-0.517674632757;IKZF1:-0.52654182857;NHLH1,2:-0.546284148111;MTF1:-0.554257821358;NKX3-1:-0.555751861373;TLX1..3_NFIC{dimer}:-0.570332651332;ZBTB6:-0.588840935602;NFKB1_REL_RELA:-0.650308898878;GCM1,2:-0.650863942323;SPIB:-0.65728733217;AR:-0.693969446767;PPARG:-0.696047175066;PAX2:-0.719214227374;FOXN1:-0.736124188446;FOXO1,3,4:-0.749329894045;FOSL2:-0.75869315166;FOS_FOS{B,L1}_JUN{B,D}:-0.779940020311;GFI1B:-0.781198397988;NFE2:-0.784062286739;MAZ:-0.794400283739;SREBF1,2:-0.800819297478;PRDM1:-0.857640114888;DBP:-0.879507265805;CEBPA,B_DDIT3:-0.883567848357;RUNX1..3:-0.890457787028;HAND1,2:-0.893492268347;HMX1:-0.904300443139;BACH2:-0.96424223132;ELF1,2,4:-0.964662168834;SMAD1..7,9:-0.978302142782;NKX3-2:-0.982269858324;ZNF148:-0.993053923735;ZNF238:-0.995027904636;SPI1:-1.00382350966;EBF1:-1.00608257151;GZF1:-1.02287591165;XBP1:-1.02409357182;HLF:-1.05622997071;RXRA_VDR{dimer}:-1.06314822246;DMAP1_NCOR{1,2}_SMARC:-1.08672896933;MYFfamily:-1.0946128009;TFAP2{A,C}:-1.13657214454;NFE2L2:-1.16182643476;NR3C1:-1.22471107028;T:-1.251359968;NFE2L1:-1.26563377852;TEAD1:-1.28021126653;ETS1,2:-1.34283030823;EP300:-1.41436651574;IRF1,2:-1.47298560479;HIF1A:-1.48842936132;TFAP4:-1.51167942976;ESR1:-1.52965865774;SRF:-1.57921549831;TBP:-1.5847689947;IRF7:-1.60258591785;NFIX:-1.60849869889;HBP1_HMGB_SSRP1_UBTF:-1.73570202515;NANOG{mouse}:-1.75577250744;GLI1..3:-1.76810128719;SPZ1:-1.90462969238;STAT2,4,6:-2.07556691226;HES1:-2.20507817287;TBX4,5:-2.25464069598;ATF6:-2.26922788876;NFATC1..3:-2.2803425329;MAFB:-2.54785247448;TFCP2:-2.92927958971
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10475-106I7;search_select_hide=table117:FF:10475-106I7
 }}

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FF:10475-106I7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0