FF:10150-102I6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005747 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10023;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.NCig10023.10150-102I6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.NCig10023.10150-102I6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.NCig10023.10150-102I6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.NCig10023.10150-102I6.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008683;DRR009555;DRZ000980;DRZ002365;DRZ012330;DRZ013715 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000200,UBERON:0001870,UBERON:0000956,UBERON:0002702,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12310.10150-102I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12310.10150-102I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12310.10150-102I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12310.10150-102I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medial%2520frontal%2520gyrus%252c%2520adult%252c%2520donor10252.CNhs12310.10150-102I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10150-102I6 | |id=FF:10150-102I6 | ||
|is_a=EFO:0002091;;FF:0000002;; | |is_a=EFO:0002091;;FF:0000002;;UBERON:0002702 | ||
|name=medial | |is_obsolete= | ||
|library_id=CNhs12310 | |||
|library_id_phase_based=2:CNhs12310 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10150 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10150 | |||
|name=medial frontal gyrus, adult, donor10252 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=NCig10023,,, | |profile_cagescan=NCig10023,,, | ||
|profile_hcage=CNhs12310,LSID913,release011,COMPLETED | |profile_hcage=CNhs12310,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=48.03825 | |rna_weight_ug=48.03825 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.22418070788832e-278!GO:0005737;cytoplasm;4.7111986590206e-145!GO:0043226;organelle;2.93102954822007e-99!GO:0043229;intracellular organelle;9.29740576087634e-99!GO:0043227;membrane-bound organelle;2.7635749130529e-92!GO:0043231;intracellular membrane-bound organelle;4.38367595084236e-92!GO:0044444;cytoplasmic part;3.55834348853244e-87!GO:0005515;protein binding;7.60782152736101e-74!GO:0044422;organelle part;1.16913298177948e-60!GO:0044446;intracellular organelle part;1.12809336509733e-59!GO:0032991;macromolecular complex;1.1636316180145e-58!GO:0016043;cellular component organization and biogenesis;1.67070213472442e-47!GO:0033036;macromolecule localization;6.03414968524532e-37!GO:0003723;RNA binding;7.01339939252821e-37!GO:0030529;ribonucleoprotein complex;1.65030865123457e-36!GO:0015031;protein transport;1.28813191094135e-35!GO:0005739;mitochondrion;8.32261683358202e-35!GO:0043234;protein complex;1.56574295112669e-33!GO:0008104;protein localization;1.90856000540374e-33!GO:0045184;establishment of protein localization;2.43418701601792e-32!GO:0044428;nuclear part;1.38414164675389e-31!GO:0043233;organelle lumen;4.80274109738255e-31!GO:0031974;membrane-enclosed lumen;4.80274109738255e-31!GO:0031090;organelle membrane;6.37728998855041e-31!GO:0046907;intracellular transport;2.56398565765428e-29!GO:0051649;establishment of cellular localization;7.75631420486674e-28!GO:0051641;cellular localization;1.72280741090065e-27!GO:0005634;nucleus;1.82740094544308e-27!GO:0016192;vesicle-mediated transport;8.2624854521591e-27!GO:0016071;mRNA metabolic process;1.25439380835808e-26!GO:0044238;primary metabolic process;3.79024942952083e-26!GO:0043170;macromolecule metabolic process;6.52367836257703e-26!GO:0044429;mitochondrial part;8.70314258670658e-26!GO:0044237;cellular metabolic process;2.55759383071933e-24!GO:0019538;protein metabolic process;5.51623148478207e-24!GO:0031975;envelope;1.14935220492285e-23!GO:0008380;RNA splicing;1.16486020423818e-23!GO:0006396;RNA processing;1.33329642347477e-23!GO:0031967;organelle envelope;1.43588948984927e-23!GO:0005829;cytosol;1.60413064250791e-22!GO:0006397;mRNA processing;8.32957838441653e-22!GO:0006886;intracellular protein transport;4.30163781190799e-21!GO:0044260;cellular macromolecule metabolic process;1.10424223149816e-20!GO:0006996;organelle organization and biogenesis;1.68655345130462e-20!GO:0044267;cellular protein metabolic process;4.19970122690088e-20!GO:0006119;oxidative phosphorylation;1.45280630767504e-19!GO:0031981;nuclear lumen;1.59880241516128e-19!GO:0005840;ribosome;2.14931503861546e-18!GO:0005740;mitochondrial envelope;2.31316950887659e-18!GO:0000166;nucleotide binding;2.58486948647905e-18!GO:0005794;Golgi apparatus;3.56665499293059e-18!GO:0031966;mitochondrial membrane;5.11832744340597e-18!GO:0043283;biopolymer metabolic process;7.15295995600276e-18!GO:0031982;vesicle;1.2041267205025e-17!GO:0065003;macromolecular complex assembly;3.45152280093268e-17!GO:0031410;cytoplasmic vesicle;7.81958789850024e-17!GO:0019866;organelle inner membrane;2.69595807371806e-16!GO:0031988;membrane-bound vesicle;2.91891738338717e-16!GO:0005681;spliceosome;5.37700349556878e-16!GO:0005743;mitochondrial inner membrane;1.39153639622969e-15!GO:0016023;cytoplasmic membrane-bound vesicle;1.62311795535901e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.11637311821546e-15!GO:0006412;translation;2.37839912527307e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.44689239134237e-15!GO:0016462;pyrophosphatase activity;2.59917369336863e-15!GO:0022607;cellular component assembly;4.08573062666955e-15!GO:0006512;ubiquitin cycle;4.49775826782369e-15!GO:0044455;mitochondrial membrane part;1.5250802908405e-14!GO:0017111;nucleoside-triphosphatase activity;1.54808672937575e-14!GO:0043687;post-translational protein modification;1.55180829703908e-14!GO:0043412;biopolymer modification;2.23941885856347e-14!GO:0032553;ribonucleotide binding;3.91087724773787e-14!GO:0032555;purine ribonucleotide binding;3.91087724773787e-14!GO:0003735;structural constituent of ribosome;4.31453087937733e-14!GO:0005746;mitochondrial respiratory chain;6.83589108168727e-14!GO:0006464;protein modification process;1.25195175908582e-13!GO:0005654;nucleoplasm;2.39399224209848e-13!GO:0045045;secretory pathway;2.71089479255157e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.84731582997262e-13!GO:0003954;NADH dehydrogenase activity;4.84731582997262e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.84731582997262e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.46043741908824e-13!GO:0017076;purine nucleotide binding;6.17277561227594e-13!GO:0007264;small GTPase mediated signal transduction;1.71831375526554e-12!GO:0044451;nucleoplasm part;1.72665878304409e-12!GO:0016874;ligase activity;1.73303470392134e-12!GO:0030695;GTPase regulator activity;1.82331758795562e-12!GO:0010467;gene expression;2.30862962515713e-12!GO:0033279;ribosomal subunit;3.42206094230785e-12!GO:0048770;pigment granule;7.69592323401801e-12!GO:0042470;melanosome;7.69592323401801e-12!GO:0006457;protein folding;8.55693242677468e-12!GO:0006793;phosphorus metabolic process;3.06631638528296e-11!GO:0006796;phosphate metabolic process;3.06631638528296e-11!GO:0005083;small GTPase regulator activity;3.07450218667278e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.15761500043112e-11!GO:0012505;endomembrane system;3.60079035239139e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.68724338546651e-11!GO:0045271;respiratory chain complex I;3.68724338546651e-11!GO:0005747;mitochondrial respiratory chain complex I;3.68724338546651e-11!GO:0043228;non-membrane-bound organelle;3.68724338546651e-11!GO:0043232;intracellular non-membrane-bound organelle;3.68724338546651e-11!GO:0048193;Golgi vesicle transport;3.93863828255066e-11!GO:0008134;transcription factor binding;5.08777676313432e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.04892228789356e-11!GO:0042773;ATP synthesis coupled electron transport;6.04892228789356e-11!GO:0009058;biosynthetic process;6.06641347982784e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.06980879495716e-10!GO:0008092;cytoskeletal protein binding;1.18530242794336e-10!GO:0022618;protein-RNA complex assembly;1.98330003774723e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.76099470584227e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.26693057724496e-10!GO:0009059;macromolecule biosynthetic process;3.9414182821586e-10!GO:0019941;modification-dependent protein catabolic process;4.47183187148593e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.47183187148593e-10!GO:0030135;coated vesicle;5.39333271408992e-10!GO:0044257;cellular protein catabolic process;6.89174855410265e-10!GO:0003924;GTPase activity;9.21758552321082e-10!GO:0031980;mitochondrial lumen;1.22673987083672e-09!GO:0005759;mitochondrial matrix;1.22673987083672e-09!GO:0006810;transport;1.36219148200009e-09!GO:0044249;cellular biosynthetic process;1.37001822510601e-09!GO:0044445;cytosolic part;1.41759769679674e-09!GO:0019829;cation-transporting ATPase activity;1.47519398632022e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.29319653974083e-09!GO:0051082;unfolded protein binding;2.29319653974083e-09!GO:0006605;protein targeting;2.90320422278187e-09!GO:0044265;cellular macromolecule catabolic process;3.23575925625285e-09!GO:0005768;endosome;3.44822053095231e-09!GO:0007010;cytoskeleton organization and biogenesis;3.63547901234289e-09!GO:0008135;translation factor activity, nucleic acid binding;3.82143218892735e-09!GO:0016604;nuclear body;5.99418482103336e-09!GO:0032940;secretion by cell;6.10365932222367e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.35196149164546e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.95445529051343e-09!GO:0043285;biopolymer catabolic process;8.8584380286148e-09!GO:0016044;membrane organization and biogenesis;9.61562975004907e-09!GO:0005525;GTP binding;1.03051238062584e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.11049360643643e-08!GO:0032559;adenyl ribonucleotide binding;1.24274353981e-08!GO:0007399;nervous system development;1.35665643085748e-08!GO:0043005;neuron projection;2.28257468433936e-08!GO:0016310;phosphorylation;2.29370260653677e-08!GO:0008639;small protein conjugating enzyme activity;2.38483126781511e-08!GO:0016607;nuclear speck;3.2648564298901e-08!GO:0004842;ubiquitin-protein ligase activity;3.35672096861592e-08!GO:0008565;protein transporter activity;3.57019579057599e-08!GO:0030163;protein catabolic process;4.00309551873052e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.00309551873052e-08!GO:0019787;small conjugating protein ligase activity;4.51392017068621e-08!GO:0005524;ATP binding;5.05273028002575e-08!GO:0019899;enzyme binding;6.42212105075491e-08!GO:0006461;protein complex assembly;6.6743150303295e-08!GO:0015986;ATP synthesis coupled proton transport;6.94376682099022e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.94376682099022e-08!GO:0044431;Golgi apparatus part;6.98595516438941e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.28400642807048e-08!GO:0051179;localization;8.28400642807048e-08!GO:0030036;actin cytoskeleton organization and biogenesis;8.95792852364658e-08!GO:0019717;synaptosome;9.88412745080769e-08!GO:0030554;adenyl nucleotide binding;1.39823590810092e-07!GO:0007242;intracellular signaling cascade;1.57642843345983e-07!GO:0051234;establishment of localization;1.5972428659109e-07!GO:0015630;microtubule cytoskeleton;1.94838737743376e-07!GO:0048523;negative regulation of cellular process;1.95438695732719e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.49706064164936e-07!GO:0000375;RNA splicing, via transesterification reactions;2.49706064164936e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.49706064164936e-07!GO:0032561;guanyl ribonucleotide binding;2.59713801688284e-07!GO:0019001;guanyl nucleotide binding;2.59713801688284e-07!GO:0015935;small ribosomal subunit;2.71001299669115e-07!GO:0006913;nucleocytoplasmic transport;3.43031494196131e-07!GO:0009057;macromolecule catabolic process;3.8470534375956e-07!GO:0015631;tubulin binding;5.1083971972848e-07!GO:0030029;actin filament-based process;5.23713722222507e-07!GO:0051169;nuclear transport;5.54030139116871e-07!GO:0030136;clathrin-coated vesicle;6.27641113735948e-07!GO:0006446;regulation of translational initiation;6.295686044681e-07!GO:0008287;protein serine/threonine phosphatase complex;6.89345645668278e-07!GO:0044248;cellular catabolic process;7.29479267982318e-07!GO:0016881;acid-amino acid ligase activity;1.15141547479956e-06!GO:0007265;Ras protein signal transduction;1.24743016285684e-06!GO:0006413;translational initiation;1.2739521417642e-06!GO:0003743;translation initiation factor activity;1.32963985359665e-06!GO:0044440;endosomal part;1.51149611827719e-06!GO:0010008;endosome membrane;1.51149611827719e-06!GO:0046034;ATP metabolic process;1.63488931992169e-06!GO:0003712;transcription cofactor activity;2.16508245306939e-06!GO:0031252;leading edge;2.56292373197025e-06!GO:0006754;ATP biosynthetic process;2.56292373197025e-06!GO:0006753;nucleoside phosphate metabolic process;2.56292373197025e-06!GO:0048471;perinuclear region of cytoplasm;2.83562592743152e-06!GO:0031965;nuclear membrane;2.88343631646739e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.27285422631206e-06!GO:0005783;endoplasmic reticulum;3.45030318820008e-06!GO:0016887;ATPase activity;3.64185729895736e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.83062300364045e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.8804158221222e-06!GO:0051186;cofactor metabolic process;4.03920498548149e-06!GO:0016070;RNA metabolic process;4.20021104445127e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.20021104445127e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.20021104445127e-06!GO:0005635;nuclear envelope;4.22191131056505e-06!GO:0042623;ATPase activity, coupled;4.29383662168353e-06!GO:0008047;enzyme activator activity;5.00346555792711e-06!GO:0048519;negative regulation of biological process;5.13416292232925e-06!GO:0048475;coated membrane;5.19370426416842e-06!GO:0030117;membrane coat;5.19370426416842e-06!GO:0009060;aerobic respiration;5.38315095417941e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.38315095417941e-06!GO:0051056;regulation of small GTPase mediated signal transduction;6.38063135230708e-06!GO:0009141;nucleoside triphosphate metabolic process;6.40652211385071e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.62669280134218e-06!GO:0000139;Golgi membrane;6.96335330556656e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.25187577895095e-06!GO:0003779;actin binding;7.69533671071255e-06!GO:0005096;GTPase activator activity;8.29802579897501e-06!GO:0045333;cellular respiration;8.59982156424886e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.3325444898671e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.3325444898671e-06!GO:0015934;large ribosomal subunit;1.0156206269364e-05!GO:0032446;protein modification by small protein conjugation;1.03305239698979e-05!GO:0005874;microtubule;1.03305239698979e-05!GO:0005730;nucleolus;1.04319483844513e-05!GO:0006897;endocytosis;1.21120428843501e-05!GO:0010324;membrane invagination;1.21120428843501e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.23448571602339e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.23448571602339e-05!GO:0009150;purine ribonucleotide metabolic process;1.24745092909461e-05!GO:0006163;purine nucleotide metabolic process;1.34788376575323e-05!GO:0016568;chromatin modification;1.37023158154218e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.47479855749815e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.4873688375419e-05!GO:0006323;DNA packaging;1.50285116969514e-05!GO:0006164;purine nucleotide biosynthetic process;1.67858718856593e-05!GO:0016567;protein ubiquitination;2.00073225631756e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.13461332921626e-05!GO:0005769;early endosome;2.39233183517707e-05!GO:0009259;ribonucleotide metabolic process;2.39233183517707e-05!GO:0005770;late endosome;2.46386790805656e-05!GO:0016564;transcription repressor activity;2.84756863339296e-05!GO:0017038;protein import;3.03794731201254e-05!GO:0005761;mitochondrial ribosome;3.11976586383671e-05!GO:0000313;organellar ribosome;3.11976586383671e-05!GO:0005905;coated pit;3.34761079507279e-05!GO:0045259;proton-transporting ATP synthase complex;4.15947434475393e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.71163606446799e-05!GO:0008017;microtubule binding;4.92065579819993e-05!GO:0006099;tricarboxylic acid cycle;5.14139698380534e-05!GO:0046356;acetyl-CoA catabolic process;5.14139698380534e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.20948404996025e-05!GO:0045786;negative regulation of progression through cell cycle;5.43477365971663e-05!GO:0009260;ribonucleotide biosynthetic process;6.75385312955388e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.61996040910348e-05!GO:0000245;spliceosome assembly;8.17107887777688e-05!GO:0009055;electron carrier activity;8.31182871502071e-05!GO:0050789;regulation of biological process;8.94136002113546e-05!GO:0030425;dendrite;9.36083980362497e-05!GO:0005798;Golgi-associated vesicle;0.000101336865358937!GO:0030027;lamellipodium;0.00010681018245822!GO:0008219;cell death;0.000113933551701504!GO:0016265;death;0.000113933551701504!GO:0006259;DNA metabolic process;0.000116144268058039!GO:0000151;ubiquitin ligase complex;0.000120200772625375!GO:0009109;coenzyme catabolic process;0.000124564407416803!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000139057735855902!GO:0030120;vesicle coat;0.000142470589376452!GO:0030662;coated vesicle membrane;0.000142470589376452!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000142470589376452!GO:0015399;primary active transmembrane transporter activity;0.000142470589376452!GO:0050794;regulation of cellular process;0.000158125359786167!GO:0016301;kinase activity;0.000162757104382324!GO:0043492;ATPase activity, coupled to movement of substances;0.000162757104382324!GO:0006732;coenzyme metabolic process;0.000188290867859328!GO:0051246;regulation of protein metabolic process;0.000201180193723439!GO:0000902;cell morphogenesis;0.000210470411279288!GO:0032989;cellular structure morphogenesis;0.000210470411279288!GO:0006403;RNA localization;0.000222541251227678!GO:0012501;programmed cell death;0.000238586480103271!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000245602492163811!GO:0000159;protein phosphatase type 2A complex;0.000249073260781532!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00025315704917308!GO:0006084;acetyl-CoA metabolic process;0.000255865691463412!GO:0046578;regulation of Ras protein signal transduction;0.000259742689148422!GO:0022890;inorganic cation transmembrane transporter activity;0.00026182377697627!GO:0006915;apoptosis;0.000270030519942129!GO:0050657;nucleic acid transport;0.000271974163552243!GO:0051236;establishment of RNA localization;0.000271974163552243!GO:0050658;RNA transport;0.000271974163552243!GO:0051187;cofactor catabolic process;0.000287818773075766!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00029293030779603!GO:0008021;synaptic vesicle;0.000302417763969951!GO:0004674;protein serine/threonine kinase activity;0.000324580214148423!GO:0009966;regulation of signal transduction;0.00032591234325885!GO:0044453;nuclear membrane part;0.00032711599815964!GO:0003729;mRNA binding;0.000339739829522729!GO:0048489;synaptic vesicle transport;0.000347382221612336!GO:0006366;transcription from RNA polymerase II promoter;0.00035824728362664!GO:0004721;phosphoprotein phosphatase activity;0.000375911381459956!GO:0031072;heat shock protein binding;0.000376544328262957!GO:0005643;nuclear pore;0.000410463586893763!GO:0045055;regulated secretory pathway;0.000416064290471729!GO:0019208;phosphatase regulator activity;0.000427965506158171!GO:0005793;ER-Golgi intermediate compartment;0.000433752666329783!GO:0003714;transcription corepressor activity;0.000506315164541223!GO:0016311;dephosphorylation;0.000519635811409877!GO:0006606;protein import into nucleus;0.000519635811409877!GO:0043566;structure-specific DNA binding;0.000567980418308239!GO:0007266;Rho protein signal transduction;0.000603766294907365!GO:0008601;protein phosphatase type 2A regulator activity;0.000615982074928572!GO:0006888;ER to Golgi vesicle-mediated transport;0.000628275402055166!GO:0051170;nuclear import;0.000697192311820882!GO:0007269;neurotransmitter secretion;0.000698752002312986!GO:0006613;cotranslational protein targeting to membrane;0.00071181351644654!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000712192791025293!GO:0030133;transport vesicle;0.000757797009675462!GO:0003676;nucleic acid binding;0.000772321614646666!GO:0009892;negative regulation of metabolic process;0.000841648309331402!GO:0005773;vacuole;0.000841648309331402!GO:0006607;NLS-bearing substrate import into nucleus;0.000862321494241581!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000921896395454266!GO:0009056;catabolic process;0.00094450685105091!GO:0003724;RNA helicase activity;0.000964337795664186!GO:0005741;mitochondrial outer membrane;0.000976283924745898!GO:0051087;chaperone binding;0.00106405735495217!GO:0048468;cell development;0.00110551488829131!GO:0016197;endosome transport;0.00110551488829131!GO:0051276;chromosome organization and biogenesis;0.00110551488829131!GO:0044432;endoplasmic reticulum part;0.00111114971884889!GO:0005938;cell cortex;0.00118682546745379!GO:0016791;phosphoric monoester hydrolase activity;0.00122183518507223!GO:0008026;ATP-dependent helicase activity;0.00124979603574019!GO:0006470;protein amino acid dephosphorylation;0.00128364095155263!GO:0019226;transmission of nerve impulse;0.00135638908467886!GO:0030532;small nuclear ribonucleoprotein complex;0.0014706732677902!GO:0043623;cellular protein complex assembly;0.00147514690600832!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0014924179025649!GO:0004812;aminoacyl-tRNA ligase activity;0.0014924179025649!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0014924179025649!GO:0019904;protein domain specific binding;0.0014924179025649!GO:0030118;clathrin coat;0.00149410175568089!GO:0019888;protein phosphatase regulator activity;0.00151276879765512!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00176731006364727!GO:0019902;phosphatase binding;0.00180315859490097!GO:0051188;cofactor biosynthetic process;0.00181414665059752!GO:0051726;regulation of cell cycle;0.00187971499375666!GO:0004386;helicase activity;0.00194181214218438!GO:0007019;microtubule depolymerization;0.0019644480315839!GO:0031901;early endosome membrane;0.00197666720490706!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00199623679066877!GO:0004722;protein serine/threonine phosphatase activity;0.00199957583221137!GO:0016481;negative regulation of transcription;0.00203092748646746!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00210205392476413!GO:0007049;cell cycle;0.0021366230291626!GO:0003697;single-stranded DNA binding;0.00215953377627058!GO:0005875;microtubule associated complex;0.00225225592551015!GO:0030867;rough endoplasmic reticulum membrane;0.00229296008490037!GO:0006752;group transfer coenzyme metabolic process;0.00235573470002604!GO:0003713;transcription coactivator activity;0.00245959674561284!GO:0006892;post-Golgi vesicle-mediated transport;0.00249286870578735!GO:0005813;centrosome;0.00250586633780402!GO:0051028;mRNA transport;0.00252730846814488!GO:0022406;membrane docking;0.0025285928377106!GO:0048278;vesicle docking;0.0025285928377106!GO:0016050;vesicle organization and biogenesis;0.002557507999928!GO:0006402;mRNA catabolic process;0.00257484802797521!GO:0050767;regulation of neurogenesis;0.00267534386996278!GO:0031968;organelle outer membrane;0.00270619318901248!GO:0019867;outer membrane;0.00273421458808673!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00273421458808673!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00281377177382427!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00281377177382427!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00281377177382427!GO:0000074;regulation of progression through cell cycle;0.0028293575168723!GO:0043038;amino acid activation;0.0029158411910749!GO:0006418;tRNA aminoacylation for protein translation;0.0029158411910749!GO:0043039;tRNA aminoacylation;0.0029158411910749!GO:0006904;vesicle docking during exocytosis;0.0030686315165594!GO:0006916;anti-apoptosis;0.00326616383776392!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00336147430701184!GO:0043069;negative regulation of programmed cell death;0.00344766085808538!GO:0006650;glycerophospholipid metabolic process;0.0034508267646037!GO:0008154;actin polymerization and/or depolymerization;0.00366976408986139!GO:0005791;rough endoplasmic reticulum;0.00381536528125578!GO:0005516;calmodulin binding;0.00386540433329438!GO:0043066;negative regulation of apoptosis;0.00390313120243044!GO:0006333;chromatin assembly or disassembly;0.00394678582145323!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00394678582145323!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0039521402417073!GO:0030426;growth cone;0.00408059426515676!GO:0030427;site of polarized growth;0.00417314887605253!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00419021678935653!GO:0031324;negative regulation of cellular metabolic process;0.00419268042505922!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00427363567627527!GO:0005099;Ras GTPase activator activity;0.00433732851766434!GO:0030424;axon;0.00444684084329405!GO:0015980;energy derivation by oxidation of organic compounds;0.00469998140158414!GO:0048487;beta-tubulin binding;0.00484959871427468!GO:0008286;insulin receptor signaling pathway;0.00486522332261834!GO:0005815;microtubule organizing center;0.00486522332261834!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00502352234082098!GO:0016740;transferase activity;0.00515005621367101!GO:0033673;negative regulation of kinase activity;0.00517002393046777!GO:0006469;negative regulation of protein kinase activity;0.00517002393046777!GO:0000323;lytic vacuole;0.00530320115533944!GO:0005764;lysosome;0.00530320115533944!GO:0008654;phospholipid biosynthetic process;0.00541626083723051!GO:0008139;nuclear localization sequence binding;0.00554227354694582!GO:0043209;myelin sheath;0.00554263205724069!GO:0005100;Rho GTPase activator activity;0.0055963144566912!GO:0031114;regulation of microtubule depolymerization;0.00579618044695002!GO:0007026;negative regulation of microtubule depolymerization;0.00579618044695002!GO:0001726;ruffle;0.00582237731672684!GO:0005048;signal sequence binding;0.00585082265662976!GO:0005789;endoplasmic reticulum membrane;0.00595960026253352!GO:0005869;dynactin complex;0.00620198522648375!GO:0044448;cell cortex part;0.00622110668147642!GO:0030054;cell junction;0.00624867295257951!GO:0009108;coenzyme biosynthetic process;0.00634883128352488!GO:0051168;nuclear export;0.00635838607142278!GO:0005839;proteasome core complex (sensu Eukaryota);0.00654381517268662!GO:0016363;nuclear matrix;0.00655519570540245!GO:0050839;cell adhesion molecule binding;0.00681036566659516!GO:0031902;late endosome membrane;0.00692215320984269!GO:0045892;negative regulation of transcription, DNA-dependent;0.00704995740968522!GO:0032011;ARF protein signal transduction;0.00707025503405594!GO:0032012;regulation of ARF protein signal transduction;0.00707025503405594!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00707025503405594!GO:0055083;monovalent inorganic anion homeostasis;0.00707025503405594!GO:0055064;chloride ion homeostasis;0.00707025503405594!GO:0030644;cellular chloride ion homeostasis;0.00707025503405594!GO:0046488;phosphatidylinositol metabolic process;0.00707073879050537!GO:0007017;microtubule-based process;0.00711539773630358!GO:0001505;regulation of neurotransmitter levels;0.00716977926022227!GO:0048167;regulation of synaptic plasticity;0.00716977926022227!GO:0006887;exocytosis;0.00742990333196061!GO:0043087;regulation of GTPase activity;0.00768661553901293!GO:0006891;intra-Golgi vesicle-mediated transport;0.00778720399297654!GO:0030258;lipid modification;0.00781722694082881!GO:0051261;protein depolymerization;0.00782576400137918!GO:0046467;membrane lipid biosynthetic process;0.00782576400137918!GO:0019887;protein kinase regulator activity;0.00789004178480954!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0079261461940782!GO:0012506;vesicle membrane;0.00808937439381212!GO:0051427;hormone receptor binding;0.00816078390606227!GO:0050811;GABA receptor binding;0.00845321157702872!GO:0007272;ensheathment of neurons;0.00845321157702872!GO:0008366;axon ensheathment;0.00845321157702872!GO:0006612;protein targeting to membrane;0.00885140984547831!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0094466542830651!GO:0051348;negative regulation of transferase activity;0.0094486942202402!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0098305382873423!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00999570521568513!GO:0042802;identical protein binding;0.0101314856210397!GO:0051920;peroxiredoxin activity;0.0110711573110007!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0112809328916262!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.011285059375686!GO:0019198;transmembrane receptor protein phosphatase activity;0.011285059375686!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0114469074331103!GO:0004667;prostaglandin-D synthase activity;0.0114469074331103!GO:0050802;circadian sleep/wake cycle, sleep;0.0114469074331103!GO:0022410;circadian sleep/wake cycle process;0.0114469074331103!GO:0042749;regulation of circadian sleep/wake cycle;0.0114469074331103!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0114469074331103!GO:0008186;RNA-dependent ATPase activity;0.011951436672585!GO:0050803;regulation of synapse structure and activity;0.0119615118903367!GO:0030742;GTP-dependent protein binding;0.012223207522995!GO:0001508;regulation of action potential;0.0122561888415328!GO:0043021;ribonucleoprotein binding;0.0122561888415328!GO:0030384;phosphoinositide metabolic process;0.0129611952120824!GO:0042578;phosphoric ester hydrolase activity;0.0138466275332538!GO:0035257;nuclear hormone receptor binding;0.0138687508061291!GO:0030660;Golgi-associated vesicle membrane;0.0142973686879866!GO:0003690;double-stranded DNA binding;0.0147852692984028!GO:0008361;regulation of cell size;0.0150460118801291!GO:0051020;GTPase binding;0.015441735759096!GO:0030658;transport vesicle membrane;0.0155578363319817!GO:0048500;signal recognition particle;0.0158447519800962!GO:0004672;protein kinase activity;0.0158925449195772!GO:0065007;biological regulation;0.0158996231078912!GO:0035035;histone acetyltransferase binding;0.0164481362037681!GO:0007243;protein kinase cascade;0.0173090710609483!GO:0005774;vacuolar membrane;0.0174852086935747!GO:0048699;generation of neurons;0.0175096926349616!GO:0046930;pore complex;0.0175993519777788!GO:0006643;membrane lipid metabolic process;0.0177780933815484!GO:0015629;actin cytoskeleton;0.0177780933815484!GO:0022008;neurogenesis;0.0183048057460593!GO:0030041;actin filament polymerization;0.0183048057460593!GO:0019903;protein phosphatase binding;0.018453563034151!GO:0051252;regulation of RNA metabolic process;0.0186336870634437!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0189705456644449!GO:0007268;synaptic transmission;0.0195047424188621!GO:0044433;cytoplasmic vesicle part;0.019535288905573!GO:0043086;negative regulation of catalytic activity;0.0197167925992213!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0201158287131029!GO:0033043;regulation of organelle organization and biogenesis;0.0201158287131029!GO:0045296;cadherin binding;0.0204641172030575!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0204898866246038!GO:0042254;ribosome biogenesis and assembly;0.0207144426638697!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0208276742293463!GO:0005092;GDP-dissociation inhibitor activity;0.0211306203395121!GO:0035023;regulation of Rho protein signal transduction;0.0211306203395121!GO:0003746;translation elongation factor activity;0.0211306203395121!GO:0065002;intracellular protein transport across a membrane;0.021208127690777!GO:0000059;protein import into nucleus, docking;0.0214306262633203!GO:0006414;translational elongation;0.0214754043244039!GO:0007050;cell cycle arrest;0.0215082025385561!GO:0065009;regulation of a molecular function;0.0216326266312246!GO:0031124;mRNA 3'-end processing;0.0217390806988565!GO:0019207;kinase regulator activity;0.0226296768889638!GO:0004298;threonine endopeptidase activity;0.0226961612486814!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0226961612486814!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0228729399762858!GO:0005868;cytoplasmic dynein complex;0.0236458215286949!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0237040772954524!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0237040772954524!GO:0006401;RNA catabolic process;0.0242106155067979!GO:0005667;transcription factor complex;0.0244993390483157!GO:0043488;regulation of mRNA stability;0.0247165910265372!GO:0043487;regulation of RNA stability;0.0247165910265372!GO:0008022;protein C-terminus binding;0.0248933890673954!GO:0051540;metal cluster binding;0.0248933890673954!GO:0051536;iron-sulfur cluster binding;0.0248933890673954!GO:0005885;Arp2/3 protein complex;0.0253763766645184!GO:0019894;kinesin binding;0.0255770800747081!GO:0042026;protein refolding;0.0256081188428611!GO:0008088;axon cargo transport;0.0256585962950127!GO:0006468;protein amino acid phosphorylation;0.0258030609365566!GO:0030132;clathrin coat of coated pit;0.0258159850491968!GO:0000209;protein polyubiquitination;0.0264787037891782!GO:0016049;cell growth;0.0270428880252815!GO:0006376;mRNA splice site selection;0.027760226718027!GO:0000389;nuclear mRNA 3'-splice site recognition;0.027760226718027!GO:0004004;ATP-dependent RNA helicase activity;0.0284402462663949!GO:0000314;organellar small ribosomal subunit;0.0287186998940784!GO:0005763;mitochondrial small ribosomal subunit;0.0287186998940784!GO:0030182;neuron differentiation;0.0288532496362602!GO:0030137;COPI-coated vesicle;0.0291211928827545!GO:0007034;vacuolar transport;0.0292929607896445!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0292929607896445!GO:0031371;ubiquitin conjugating enzyme complex;0.0300298711377578!GO:0030030;cell projection organization and biogenesis;0.0302564205077006!GO:0048858;cell projection morphogenesis;0.0302564205077006!GO:0032990;cell part morphogenesis;0.0302564205077006!GO:0009117;nucleotide metabolic process;0.0307424148187019!GO:0031267;small GTPase binding;0.0311930819077019!GO:0016859;cis-trans isomerase activity;0.031399967929374!GO:0051789;response to protein stimulus;0.0324590800837609!GO:0006986;response to unfolded protein;0.0324590800837609!GO:0003725;double-stranded RNA binding;0.0329460588993152!GO:0005765;lysosomal membrane;0.0334812435358655!GO:0001578;microtubule bundle formation;0.0342883992799341!GO:0017166;vinculin binding;0.0344685524718644!GO:0000062;acyl-CoA binding;0.0345738108705082!GO:0035258;steroid hormone receptor binding;0.0346212178828668!GO:0001666;response to hypoxia;0.0346212178828668!GO:0005952;cAMP-dependent protein kinase complex;0.0354853069226834!GO:0030911;TPR domain binding;0.0362260254569805!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0363643104131843!GO:0019783;small conjugating protein-specific protease activity;0.0363869847837237!GO:0000287;magnesium ion binding;0.0364598918631374!GO:0017016;Ras GTPase binding;0.0371167000305936!GO:0043681;protein import into mitochondrion;0.0376081980391939!GO:0043407;negative regulation of MAP kinase activity;0.0378293737029777!GO:0019911;structural constituent of myelin sheath;0.0378498202623246!GO:0005545;phosphatidylinositol binding;0.0384794823625581!GO:0051287;NAD binding;0.0397749400357682!GO:0016579;protein deubiquitination;0.0401137593560029!GO:0008090;retrograde axon cargo transport;0.0411738381395022!GO:0033596;TSC1-TSC2 complex;0.0411738381395022!GO:0033693;neurofilament bundle assembly;0.0411738381395022!GO:0006665;sphingolipid metabolic process;0.0424450918390257!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0425043648211596!GO:0045047;protein targeting to ER;0.0425043648211596!GO:0003711;transcription elongation regulator activity;0.0429257452699891!GO:0008180;signalosome;0.0440562326914262!GO:0004843;ubiquitin-specific protease activity;0.0441568690806696!GO:0004183;carboxypeptidase E activity;0.0442365269640891!GO:0030070;insulin processing;0.0442365269640891!GO:0030125;clathrin vesicle coat;0.0442365269640891!GO:0030665;clathrin coated vesicle membrane;0.0442365269640891!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0451175247177212!GO:0046839;phospholipid dephosphorylation;0.0451195177528189!GO:0030659;cytoplasmic vesicle membrane;0.0462625779599282!GO:0031123;RNA 3'-end processing;0.048183748010945!GO:0006818;hydrogen transport;0.048183748010945!GO:0006974;response to DNA damage stimulus;0.048183748010945!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.048183748010945!GO:0015002;heme-copper terminal oxidase activity;0.048183748010945!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.048183748010945!GO:0004129;cytochrome-c oxidase activity;0.048183748010945!GO:0042995;cell projection;0.0482360913792027!GO:0044456;synapse part;0.0482791427221148!GO:0016079;synaptic vesicle exocytosis;0.0486977903545062!GO:0044437;vacuolar part;0.0486977903545062!GO:0031628;opioid receptor binding;0.0488503164366976!GO:0031852;mu-type opioid receptor binding;0.0488503164366976!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0489446023119144!GO:0004683;calmodulin-dependent protein kinase activity;0.0495865162928693 | |||
|sample_id=10150 | |sample_id=10150 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=medial frontal gyrus | |sample_tissue=medial frontal gyrus | ||
|top_motifs=REST:3.88884208934;MYFfamily:3.83625240843;DBP:3.82563332998;NHLH1,2:3.75731845057;AHR_ARNT_ARNT2:3.57850236437;PRRX1,2:3.57636513421;CUX2:3.4055686946;EGR1..3:3.35707214746;PRDM1:3.35324624368;ZFP161:3.26174566035;ATF2:3.23979644727;RREB1:3.17148042825;MED-1{core}:3.08816028016;MTE{core}:2.97195385992;ZBTB6:2.84820259375;GTF2I:2.84568451894;MTF1:2.8244153942;PAX6:2.7628893242;MZF1:2.73645969455;GATA4:2.71010605088;HOXA9_MEIS1:2.70028498842;OCT4_SOX2{dimer}:2.69517061143;TFAP2B:2.64495504111;SOX2:2.51562059526;NKX3-2:2.4993618606;POU6F1:2.49874942405;POU5F1:2.48780561418;ZNF384:2.40431798541;NFIX:2.39704624708;PATZ1:2.39387051197;RFX1:2.34609789484;FOXD3:2.33463258993;HIC1:2.32824347474;FOXM1:2.32702727838;RFX2..5_RFXANK_RFXAP:2.30526378127;PAX5:2.23522489148;PAX4:2.11709212086;NFIL3:2.07922250168;HBP1_HMGB_SSRP1_UBTF:2.0478292137;CDC5L:2.03528378695;KLF4:2.00547233642;GFI1B:2.00203258054;SOX5:1.98352089335;IKZF2:1.96819222893;BREu{core}:1.94929418826;SMAD1..7,9:1.91754325557;HOX{A4,D4}:1.90838043995;TGIF1:1.89663808121;LMO2:1.8847134967;FOXP1:1.87564309195;FOX{F1,F2,J1}:1.8700812237;BPTF:1.86717507935;FOXQ1:1.84892152555;MAZ:1.84076990739;SOX{8,9,10}:1.80154790629;ARID5B:1.76588562612;HMGA1,2:1.69764963816;POU3F1..4:1.61712633839;NKX6-1,2:1.57191602644;NRF1:1.51288950293;TEF:1.4945610534;TFDP1:1.38134079373;FOXP3:1.37106617696;EP300:1.36846262857;STAT1,3:1.3593829521;SOX17:1.31529382061;XBP1:1.3100706546;RBPJ:1.28302086695;LEF1_TCF7_TCF7L1,2:1.27418236415;JUN:1.19360432919;T:1.18136161315;EBF1:1.08928410994;HMX1:1.08853854535;GCM1,2:1.07116324543;ZNF143:1.06775264971;ZNF238:1.04840113339;SP1:1.04818879469;MAFB:1.01204380358;ALX1:1.00344416717;FOX{D1,D2}:0.937708629843;HAND1,2:0.91507438891;AR:0.899803431023;POU1F1:0.88233586551;GTF2A1,2:0.867022387196;ADNP_IRX_SIX_ZHX:0.86455009632;SREBF1,2:0.835003801177;TOPORS:0.823761339858;STAT2,4,6:0.810253628804;NANOG:0.760678657139;TLX1..3_NFIC{dimer}:0.743969363322;SPZ1:0.729369583481;TFAP2{A,C}:0.716266790899;MYOD1:0.688224974125;NKX2-3_NKX2-5:0.683813430522;NR3C1:0.661780129016;ONECUT1,2:0.653317536908;FOXL1:0.627352799146;TLX2:0.598824571099;ZNF423:0.585607907592;ZBTB16:0.585014748211;GZF1:0.580704756104;RORA:0.569246662465;ESRRA:0.564619319193;MYBL2:0.558718341679;GFI1:0.544205164026;FOXO1,3,4:0.408693444062;FOXN1:0.386249315478;ZEB1:0.385352251128;CRX:0.382035780141;CREB1:0.368557691122;MEF2{A,B,C,D}:0.364269978389;ZIC1..3:0.338114307831;PAX2:0.250957889984;UFEwm:0.214199890397;PBX1:0.199372326633;IRF7:0.1829519822;FOX{I1,J2}:0.180764766967;YY1:0.172557557043;ATF5_CREB3:0.169114598646;NFATC1..3:0.147108026164;IKZF1:0.0410678068385;AIRE:0.0133121947289;PAX1,9:-0.0202981185629;ATF4:-0.0436824647678;NFY{A,B,C}:-0.0570105530821;HSF1,2:-0.11244236573;XCPE1{core}:-0.133900913757;NFE2L2:-0.134213111224;PDX1:-0.141401133922;IRF1,2:-0.141426106595;NANOG{mouse}:-0.158856124601;FOXA2:-0.17677441796;DMAP1_NCOR{1,2}_SMARC:-0.222877312338;PAX3,7:-0.236291024438;LHX3,4:-0.238328752092;CDX1,2,4:-0.304459176288;NKX3-1:-0.333465094952;HOX{A6,A7,B6,B7}:-0.369721750092;VSX1,2:-0.372185532723;SPI1:-0.405870363644;TBX4,5:-0.446169302308;CEBPA,B_DDIT3:-0.497992784497;SNAI1..3:-0.616297842654;NKX2-2,8:-0.622322912916;NFE2:-0.628374047101;PITX1..3:-0.637399038889;EVI1:-0.673193690993;bHLH_family:-0.673294672857;SPIB:-0.711262537072;NR1H4:-0.744840760081;GATA6:-0.745569339854;ATF6:-0.80263351426;ETS1,2:-0.810994028345;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.861508987468;TAL1_TCF{3,4,12}:-0.90504502646;TFAP4:-0.923119137608;HNF1A:-1.0065175973;HIF1A:-1.05010689643;E2F1..5:-1.08988589327;HNF4A_NR2F1,2:-1.11140807477;FOSL2:-1.12892617377;TEAD1:-1.13769727897;BACH2:-1.13801205756;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.1430620489;POU2F1..3:-1.15030036892;TP53:-1.1618760853;FOS_FOS{B,L1}_JUN{B,D}:-1.19053327041;NFE2L1:-1.20439783416;RUNX1..3:-1.25740673425;PAX8:-1.26447115768;NFKB1_REL_RELA:-1.29260771657;TFCP2:-1.31766026149;GLI1..3:-1.33629355552;ZNF148:-1.39391034305;ELF1,2,4:-1.42688162002;ELK1,4_GABP{A,B1}:-1.45209519709;RXRA_VDR{dimer}:-1.46959396928;RXR{A,B,G}:-1.47514267549;NR5A1,2:-1.48732823162;HLF:-1.52206563485;TBP:-1.52699006517;ALX4:-1.63966290361;MYB:-1.7656252828;ESR1:-1.88030758509;PPARG:-1.89088630384;SRF:-1.96650664854;NKX2-1,4:-2.14545408856;STAT5{A,B}:-2.2276692458;HOX{A5,B5}:-2.24386858864;NR6A1:-2.34036646272;EN1,2:-2.68197641168;HES1:-2.7029623225 | |top_motifs=REST:3.88884208934;MYFfamily:3.83625240843;DBP:3.82563332998;NHLH1,2:3.75731845057;AHR_ARNT_ARNT2:3.57850236437;PRRX1,2:3.57636513421;CUX2:3.4055686946;EGR1..3:3.35707214746;PRDM1:3.35324624368;ZFP161:3.26174566035;ATF2:3.23979644727;RREB1:3.17148042825;MED-1{core}:3.08816028016;MTE{core}:2.97195385992;ZBTB6:2.84820259375;GTF2I:2.84568451894;MTF1:2.8244153942;PAX6:2.7628893242;MZF1:2.73645969455;GATA4:2.71010605088;HOXA9_MEIS1:2.70028498842;OCT4_SOX2{dimer}:2.69517061143;TFAP2B:2.64495504111;SOX2:2.51562059526;NKX3-2:2.4993618606;POU6F1:2.49874942405;POU5F1:2.48780561418;ZNF384:2.40431798541;NFIX:2.39704624708;PATZ1:2.39387051197;RFX1:2.34609789484;FOXD3:2.33463258993;HIC1:2.32824347474;FOXM1:2.32702727838;RFX2..5_RFXANK_RFXAP:2.30526378127;PAX5:2.23522489148;PAX4:2.11709212086;NFIL3:2.07922250168;HBP1_HMGB_SSRP1_UBTF:2.0478292137;CDC5L:2.03528378695;KLF4:2.00547233642;GFI1B:2.00203258054;SOX5:1.98352089335;IKZF2:1.96819222893;BREu{core}:1.94929418826;SMAD1..7,9:1.91754325557;HOX{A4,D4}:1.90838043995;TGIF1:1.89663808121;LMO2:1.8847134967;FOXP1:1.87564309195;FOX{F1,F2,J1}:1.8700812237;BPTF:1.86717507935;FOXQ1:1.84892152555;MAZ:1.84076990739;SOX{8,9,10}:1.80154790629;ARID5B:1.76588562612;HMGA1,2:1.69764963816;POU3F1..4:1.61712633839;NKX6-1,2:1.57191602644;NRF1:1.51288950293;TEF:1.4945610534;TFDP1:1.38134079373;FOXP3:1.37106617696;EP300:1.36846262857;STAT1,3:1.3593829521;SOX17:1.31529382061;XBP1:1.3100706546;RBPJ:1.28302086695;LEF1_TCF7_TCF7L1,2:1.27418236415;JUN:1.19360432919;T:1.18136161315;EBF1:1.08928410994;HMX1:1.08853854535;GCM1,2:1.07116324543;ZNF143:1.06775264971;ZNF238:1.04840113339;SP1:1.04818879469;MAFB:1.01204380358;ALX1:1.00344416717;FOX{D1,D2}:0.937708629843;HAND1,2:0.91507438891;AR:0.899803431023;POU1F1:0.88233586551;GTF2A1,2:0.867022387196;ADNP_IRX_SIX_ZHX:0.86455009632;SREBF1,2:0.835003801177;TOPORS:0.823761339858;STAT2,4,6:0.810253628804;NANOG:0.760678657139;TLX1..3_NFIC{dimer}:0.743969363322;SPZ1:0.729369583481;TFAP2{A,C}:0.716266790899;MYOD1:0.688224974125;NKX2-3_NKX2-5:0.683813430522;NR3C1:0.661780129016;ONECUT1,2:0.653317536908;FOXL1:0.627352799146;TLX2:0.598824571099;ZNF423:0.585607907592;ZBTB16:0.585014748211;GZF1:0.580704756104;RORA:0.569246662465;ESRRA:0.564619319193;MYBL2:0.558718341679;GFI1:0.544205164026;FOXO1,3,4:0.408693444062;FOXN1:0.386249315478;ZEB1:0.385352251128;CRX:0.382035780141;CREB1:0.368557691122;MEF2{A,B,C,D}:0.364269978389;ZIC1..3:0.338114307831;PAX2:0.250957889984;UFEwm:0.214199890397;PBX1:0.199372326633;IRF7:0.1829519822;FOX{I1,J2}:0.180764766967;YY1:0.172557557043;ATF5_CREB3:0.169114598646;NFATC1..3:0.147108026164;IKZF1:0.0410678068385;AIRE:0.0133121947289;PAX1,9:-0.0202981185629;ATF4:-0.0436824647678;NFY{A,B,C}:-0.0570105530821;HSF1,2:-0.11244236573;XCPE1{core}:-0.133900913757;NFE2L2:-0.134213111224;PDX1:-0.141401133922;IRF1,2:-0.141426106595;NANOG{mouse}:-0.158856124601;FOXA2:-0.17677441796;DMAP1_NCOR{1,2}_SMARC:-0.222877312338;PAX3,7:-0.236291024438;LHX3,4:-0.238328752092;CDX1,2,4:-0.304459176288;NKX3-1:-0.333465094952;HOX{A6,A7,B6,B7}:-0.369721750092;VSX1,2:-0.372185532723;SPI1:-0.405870363644;TBX4,5:-0.446169302308;CEBPA,B_DDIT3:-0.497992784497;SNAI1..3:-0.616297842654;NKX2-2,8:-0.622322912916;NFE2:-0.628374047101;PITX1..3:-0.637399038889;EVI1:-0.673193690993;bHLH_family:-0.673294672857;SPIB:-0.711262537072;NR1H4:-0.744840760081;GATA6:-0.745569339854;ATF6:-0.80263351426;ETS1,2:-0.810994028345;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.861508987468;TAL1_TCF{3,4,12}:-0.90504502646;TFAP4:-0.923119137608;HNF1A:-1.0065175973;HIF1A:-1.05010689643;E2F1..5:-1.08988589327;HNF4A_NR2F1,2:-1.11140807477;FOSL2:-1.12892617377;TEAD1:-1.13769727897;BACH2:-1.13801205756;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.1430620489;POU2F1..3:-1.15030036892;TP53:-1.1618760853;FOS_FOS{B,L1}_JUN{B,D}:-1.19053327041;NFE2L1:-1.20439783416;RUNX1..3:-1.25740673425;PAX8:-1.26447115768;NFKB1_REL_RELA:-1.29260771657;TFCP2:-1.31766026149;GLI1..3:-1.33629355552;ZNF148:-1.39391034305;ELF1,2,4:-1.42688162002;ELK1,4_GABP{A,B1}:-1.45209519709;RXRA_VDR{dimer}:-1.46959396928;RXR{A,B,G}:-1.47514267549;NR5A1,2:-1.48732823162;HLF:-1.52206563485;TBP:-1.52699006517;ALX4:-1.63966290361;MYB:-1.7656252828;ESR1:-1.88030758509;PPARG:-1.89088630384;SRF:-1.96650664854;NKX2-1,4:-2.14545408856;STAT5{A,B}:-2.2276692458;HOX{A5,B5}:-2.24386858864;NR6A1:-2.34036646272;EN1,2:-2.68197641168;HES1:-2.7029623225 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10150-102I6;search_select_hide=table117:FF:10150-102I6 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | medial frontal gyrus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12310 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12310
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12310
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0633 |
| 10 | 10 | 0.0542 |
| 100 | 100 | 0.293 |
| 101 | 101 | 0.45 |
| 102 | 102 | 0.866 |
| 103 | 103 | 0.117 |
| 104 | 104 | 0.144 |
| 105 | 105 | 0.113 |
| 106 | 106 | 0.0536 |
| 107 | 107 | 0.106 |
| 108 | 108 | 0.974 |
| 109 | 109 | 0.00251 |
| 11 | 11 | 0.0142 |
| 110 | 110 | 0.0498 |
| 111 | 111 | 0.161 |
| 112 | 112 | 0.413 |
| 113 | 113 | 0.556 |
| 114 | 114 | 0.157 |
| 115 | 115 | 0.885 |
| 116 | 116 | 0.163 |
| 117 | 117 | 0.011 |
| 118 | 118 | 0.12 |
| 119 | 119 | 0.173 |
| 12 | 12 | 0.503 |
| 120 | 120 | 0.221 |
| 121 | 121 | 0.332 |
| 122 | 122 | 0.914 |
| 123 | 123 | 0.597 |
| 124 | 124 | 0.114 |
| 125 | 125 | 0.164 |
| 126 | 126 | 0.0153 |
| 127 | 127 | 0.554 |
| 128 | 128 | 0.171 |
| 129 | 129 | 0.524 |
| 13 | 13 | 9.39575e-4 |
| 130 | 130 | 0.226 |
| 131 | 131 | 0.0686 |
| 132 | 132 | 0.598 |
| 133 | 133 | 0.0499 |
| 134 | 134 | 0.613 |
| 135 | 135 | 0.225 |
| 136 | 136 | 0.00179 |
| 137 | 137 | 0.943 |
| 138 | 138 | 0.964 |
| 139 | 139 | 0.114 |
| 14 | 14 | 0.793 |
| 140 | 140 | 0.41 |
| 141 | 141 | 0.612 |
| 142 | 142 | 0.763 |
| 143 | 143 | 0.0489 |
| 144 | 144 | 0.869 |
| 145 | 145 | 0.123 |
| 146 | 146 | 0.484 |
| 147 | 147 | 0.769 |
| 148 | 148 | 0.303 |
| 149 | 149 | 0.227 |
| 15 | 15 | 0.0878 |
| 150 | 150 | 0.165 |
| 151 | 151 | 0.639 |
| 152 | 152 | 0.0904 |
| 153 | 153 | 0.835 |
| 154 | 154 | 0.479 |
| 155 | 155 | 0.877 |
| 156 | 156 | 0.432 |
| 157 | 157 | 0.452 |
| 158 | 158 | 0.364 |
| 159 | 159 | 0.0316 |
| 16 | 16 | 0.0461 |
| 160 | 160 | 0.247 |
| 161 | 161 | 0.223 |
| 162 | 162 | 0.684 |
| 163 | 163 | 0.707 |
| 164 | 164 | 0.0423 |
| 165 | 165 | 0.0399 |
| 166 | 166 | 0.932 |
| 167 | 167 | 0.815 |
| 168 | 168 | 0.556 |
| 169 | 169 | 0.00944 |
| 17 | 17 | 0.134 |
| 18 | 18 | 0.127 |
| 19 | 19 | 0.185 |
| 2 | 2 | 0.891 |
| 20 | 20 | 0.127 |
| 21 | 21 | 0.0605 |
| 22 | 22 | 0.189 |
| 23 | 23 | 0.448 |
| 24 | 24 | 0.0414 |
| 25 | 25 | 0.457 |
| 26 | 26 | 1.85883e-4 |
| 27 | 27 | 0.81 |
| 28 | 28 | 0.653 |
| 29 | 29 | 0.00722 |
| 3 | 3 | 0.0494 |
| 30 | 30 | 0.962 |
| 31 | 31 | 0.888 |
| 32 | 32 | 0.0266 |
| 33 | 33 | 0.0495 |
| 34 | 34 | 0.635 |
| 35 | 35 | 0.621 |
| 36 | 36 | 0.162 |
| 37 | 37 | 0.0367 |
| 38 | 38 | 0.349 |
| 39 | 39 | 0.25 |
| 4 | 4 | 0.692 |
| 40 | 40 | 0.0281 |
| 41 | 41 | 0.293 |
| 42 | 42 | 0.245 |
| 43 | 43 | 0.12 |
| 44 | 44 | 0.168 |
| 45 | 45 | 0.682 |
| 46 | 46 | 0.0747 |
| 47 | 47 | 0.0679 |
| 48 | 48 | 0.057 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.59 |
| 50 | 50 | 0.332 |
| 51 | 51 | 0.434 |
| 52 | 52 | 0.531 |
| 53 | 53 | 0.85 |
| 54 | 54 | 0.397 |
| 55 | 55 | 0.561 |
| 56 | 56 | 0.484 |
| 57 | 57 | 0.313 |
| 58 | 58 | 0.309 |
| 59 | 59 | 0.0844 |
| 6 | 6 | 0.946 |
| 60 | 60 | 0.0803 |
| 61 | 61 | 0.0667 |
| 62 | 62 | 0.196 |
| 63 | 63 | 0.185 |
| 64 | 64 | 0.21 |
| 65 | 65 | 0.282 |
| 66 | 66 | 0.15 |
| 67 | 67 | 0.363 |
| 68 | 68 | 0.126 |
| 69 | 69 | 0.292 |
| 7 | 7 | 0.0515 |
| 70 | 70 | 0.0537 |
| 71 | 71 | 0.011 |
| 72 | 72 | 0.414 |
| 73 | 73 | 0.0299 |
| 74 | 74 | 0.922 |
| 75 | 75 | 0.0422 |
| 76 | 76 | 0.434 |
| 77 | 77 | 0.148 |
| 78 | 78 | 0.00223 |
| 79 | 79 | 0.359 |
| 8 | 8 | 0.0604 |
| 80 | 80 | 0.527 |
| 81 | 81 | 0.705 |
| 82 | 82 | 0.625 |
| 83 | 83 | 0.0663 |
| 84 | 84 | 0.671 |
| 85 | 85 | 0.248 |
| 86 | 86 | 0.237 |
| 87 | 87 | 2.09946e-4 |
| 88 | 88 | 0.795 |
| 89 | 89 | 0.392 |
| 9 | 9 | 0.37 |
| 90 | 90 | 0.0724 |
| 91 | 91 | 0.751 |
| 92 | 92 | 0.526 |
| 93 | 93 | 0.997 |
| 94 | 94 | 0.191 |
| 95 | 95 | 0.0133 |
| 96 | 96 | 0.797 |
| 97 | 97 | 0.703 |
| 98 | 98 | 0.234 |
| 99 | 99 | 0.595 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12310
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
UBERON:0002702 middle frontal gyrus
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000200 (gyrus)
0001870 (frontal cortex)
0000956 (cerebral cortex)
0002702 (middle frontal gyrus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
