Personal tools

Coexpression cluster:C1153: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 9: Line 9:
|tf_chipseq_enrich=MAFF#23764;2:16.09010185427:0.00623834681426503:0.0275300728021223!MAX#4149;7:6.45255550900712:2.14589603858566e-06:7.76560070595454e-05!MYC#4609;7:5.2222818716094:9.4355989882785e-06:0.000250876915157031!NFKB1#4790;5:3.9200453029956:0.00303658142448461:0.0161179877714855!SMARCC1#6599;2:12.4752455198947:0.0102004731657184:0.0379877056395117
|tf_chipseq_enrich=MAFF#23764;2:16.09010185427:0.00623834681426503:0.0275300728021223!MAX#4149;7:6.45255550900712:2.14589603858566e-06:7.76560070595454e-05!MYC#4609;7:5.2222818716094:9.4355989882785e-06:0.000250876915157031!NFKB1#4790;5:3.9200453029956:0.00303658142448461:0.0161179877714855!SMARCC1#6599;2:12.4752455198947:0.0102004731657184:0.0379877056395117
|tfbs_overrepresentation=0.31043,0.131575,0.947389,0.107813,0.405466,0.0462738,0.0974871,0.131367,0.0746874,0.0589549,0.295561,0.00327683,0.386236,0.269614,0.313114,0.138515,0.298536,0.214302,0.119001,0.234193,0.385995,0.282418,0.180923,0.20757,0.0943256,0.432377,0.422025,0.199011,0.303793,0.204444,0.414424,0.000212049,0.0415685,0.42006,0.148393,0.00124815,0.934067,0.097401,0.258596,0.148774,0.210798,0.0564873,0.296737,0.377815,0.259708,0.0825288,0.0864669,0.373342,0.240639,0.260266,0.000709819,0.12188,0.156121,0.203677,0.403772,0.0873518,0.232986,0.427667,0.173296,0.229205,0.0673274,0.314503,0.235283,0.168316,0.122724,0.113864,0.637,0.134457,0.189423,0.34721,0.670888,0.150845,0.195543,0.25669,0.0173573,0.0394864,0.210826,0.0989984,0.0847661,0.0168408,0.209062,0.451469,0.0963703,0.247724,0.552245,0.491847,0.143736,0.421411,0.888138,0.140328,0.00130549,0.111901,0.208559,0.107066,0.188008,0.248084,0.871457,0.322402,0.203166,0.526481,0.129026,0.174882,0.300234,0.0843602,0.438429,0.0929061,0.149379,0.618184,0.304684,0.519136,0.375285,0.0775356,0.314757,0.0407805,0.220427,0.0769904,0.0468147,0.127234,0.294794,0.184794,0.346582,0.431052,0.296899,0.188824,0.222747,0.365096,0.198942,0.034178,0.185876,0.0457956,0.133529,0.165976,0.128445,0.0523619,0.269253,0.234279,0.144853,0.124383,0.0754012,0.00920461,0.052339,0.272785,0.412653,0.326814,0.879733,0.154324,0.215565,0.1856,0.0885156,0.259543,0.0971196,0.30366,0.371915,0.0609284,0.0968299,0.253074,0.165818,0.123538,0.116496,0.0769293,0.00341668,0.208356,0.251281,0.311437,0.525489,0.0332702,0.0909267,0.272323,0.0916381,0.217617,0.370083,0.292316,0.766596,0.121785,0.17666,0.197691,0.297301,0.373889,0.367859,0.0811784,0.332099,0.262763,0.0627829,0.249166,0.16364,0.255634,0.00141861,0.0912436,0.18278,0.35905,0.232364,0.0131971,0.263667,0.45461,0.243403,0.106408,0.173147,0.135052,0.150784,0.237426,0.196091,0.135293,0.0704675,0.135734,0.289872,0.00577396,0.525644,0.319069,0.0175277,0.367697,0.103767,0.226759,0.260173,0.243859,0.0122386,0.350868,0.00895684,0.219863,0.140859,0.224003,0.300341,0.662833,0.32693,0.336135,0.163924,0.270849,0.294471,0.189218,0.135411,0.134214,0.860233,0.678094,0.0949171,0.169481,0.000105869,0.204086,0.106746,0.160103,0.340697,0.431213,0.0812749,0.63269,0.214704,0.183242,0.25057,0.290614,0.179951,0.241366,0.663276,0.252043,6.42975e-05,0.37985,0.380877,0.213951,0.214075,0.333636,0.232558,0.409093,0.154888,0.869652,0.138561,0.361831,0.340466,0.273737,0.0786852,0.179028,0.179229,0.201771,0.254117,0.16741,0.532883,0.141494,0.496492,0.748734,0.190495,0.0865316,0.27777,0.871477,0.787698,0.971688,0.905319,0.575229,0.380957,0.535046,0.614575,0.408427,0.507115,0.74825,0.664373,0.214092,0.793549,0.241042,0.691446,0.606605,0.532767,0.186918,0.523169,0.19345,0.0015928,0.693154,0.603039,0.880156,0.38355,0.6506,0.373708,0.723928,0.238054,0.60842,0.437154,0.727324,0.100365,0.765804,0.439013,0.256939,0.511801,0.0957838,0.71452,0.78693,0.494595,0.530579,0.205002,0.0699586,0.589017,0.445808,0.225057,0.884305,0.54096,0.586014,0.0536716,0.552809,0.750148,0.865425,0.715851,0.554465,0.779369,0.741035,0.298206,0.866143,0.64314,0.374876,0.942661,0.981994,0.830709,0.528337,0.467165,0.380732,0.62916,0.266616,0.16893,0.899187,0.804395,0.814166,0.821424,0.486761,0.537738,0.775056,0.340223,0.14951,0.162309,0.379192,0.62513,0.965193,0.332632,0.711307,0.263267,0.0398914,0.288537,0.750089,0.437649,0.583275,0.523849,0.102102,0.165804,0.454926,0.702452,0.874639,0.80356,0.557198,0.0768885,0.77992,0.549109,0.236455,0.931576,0.532418,0.340787,0.729146,0.453428,0.61578,0.401761,0.327395,0.858503,0.721107,0.20071,0.363777,0.241579,0.942161,0.246698,0.0524225,0.0529282,0.314229,0.667503,0.749333,0.175626,0.0315444,0.320625,0.10531,0.291113,0.503499,0.286678,0.215083,0.0115595,0.555733,0.542255,0.625729,0.574375,0.57326,0.883094,0.224884,0.822125,0.542308,0.159495,0.646316,0.450384,0.34286,0.358681,0.651741,0.767511,0.961929,0.416603,0.51876,0.704347,0.738461,0.518983,0.619771,0.846682,0.537511,0.300014,0.0557631,0.820036,0.33353,0.000512615,0.0968895,0.460268,0.387548,0.195754,0.133496,0.518162,0.19873,0.630454,0.539782,0.265981,0.777717,0.122637,0.21899,0.409678,0.588029,0.15528,0.125135,0.392877,0.172615,0.129203,0.304883,0.11859,0.412193,0.744608,0.743378,0.0141468,0.241931,0.54931,0.0986558,0.569749,0.270589,0.2868,0.231853,0.525257,0.140425,0.673929,0.0412928,0.570618,0.535059,0.684902,0.105116,0.351863,0.247203,0.227166,0.197433,0.190714,0.333925,0.232295,0.0993709,0.00905448,0.264955,0.275796,0.42369,0.394858,0.62923,0.112748,0.182834,0.148755,0.374546,0.240628,0.438923,0.61103,0.398206,0.28169,0.3861,0.108827,0.405826,0.703418,0.273081,0.363066,0.378645,0.35119,0.192669,0.208253,0.0260665,0.00310839,0.232159,0.528175,0.0111948,0.359315,0.298797,0.425775,0.0687597,0.280435,0.10082,0.117938,0.421126,0.321571,0.176362,0.212715,0.334514,0.264825,0.19886,0.125399,0.539304,0.817594,0.291561,0.0337354,0.146629,0.426032,0.1158,0.177111,0.167984,0.0647522,0.00176382,0.123448,0.17256,0.126216,0.00463747,0.0787488,0.0883646,0.496336,6.54437e-06,0.407665,0.11039,0.0750505,0.660283,0.0754745,0.632378,0.439214,0.0896836,0.133679,0.000348514,0.262768,0.235824,0.23812,0.506939,0.0654706,0.844302,0.000549587,0.0883079,0.192275,0.123717,0.3044,0.494788,0.435034,0.00165036,0.27954,0.689314,0.0040197,0.545823,0.168686,0.35711,0.180717,0.0814673,0.614081,0.311267,0.299453,0.347601,0.297851,0.195385,0.578705,0.546003,0.106912,0.207535,0.747423,0.283013,0.17144,0.236468,0.274647,0.280244,0.933654,0.750867,0.1168,0.216736,0.112879,0.138362,0.1674,0.205022,0.304414,0.0775871,0.1646,0.530976,0.956744,0.916686,0.435374,0.190081,0.25636,0.392755,0.366993,0.843094,0.12921,0.107541,0.324602,0.136306,0.362226,0.565792,0.158567,0.446426,0.551931,0.0810658,0.268889,0.361819,0.996492,0.998378,0.417001,0.436925,0.234633,0.150144,0.00264495,0.111506,0.209512,0.415762,0.167545,0.1033,0.238509,0.156356,0.450242,0.322099,0.0857464,0.282499,0.101873,0.121306,0.246526,0.203595,0.356991,0.227948,0.44271,0.128341,0.463619,0.168391,0.545636,0.320047,0.397073,0.437057,0.221207,0.603174,0.358,0.621995,0.318595,0.140173,0.390753,0.0550548,0.805801,0.326484,0.15977,0.201434,0.134947,0.304849,0.316782,0.212636,0.325012,0.353123,0.394821,0.291345,0.00344244,0.00509407,0.547467,0.255995,0.184894,0.609179,0.244347,0.243363,0.382464,0.361244,0.207462,0.51104,0.487422,0.29768,0.217499,0.500934,0.225368,0.244195,0.0586175,0.348776,0.198885,0.608664,0.347052,0.386025,0.1797,0.379465,0.327304,0.217315,0.0892444,0.132491,0.48467,0.367752,0.436987,0.458334,0.704893,0.895348,0.0821811,0.71056,0.279549,0.0984834,0.284421,0.71736,0.00495141,0.751141,0.344864,0.458949,0.279105,0.741039,0.659829,0.14201,0.750889,0.401507,0.330231,0.648881,0.123881,0.0272023,0.601152,0.910041,0.147508,0.0329228,0.684866,0.790371,0.481522,0.744931,0.0972319,0.954926,0.951598,0.451787,0.818359,0.00826896,0.680172,0.542303,0.805952,0.846379,0.192833,0.54891,0.341975,0.178566,0.00135236,0.863925,0.780774,0.615729,0.433619,0.154752,0.74852,0.478352,0.969954,0.32181,0.954834,0.931591,0.337191,0.407631,0.910621,0.797881,0.976385,0.664234,0.972335,0.779967,0.971958,0.621436,0.96824,0.411785,0.40673,0.415502,0.203449,0.499305,0.0105063,0.0191281,0.676266,0.327011,0.299176,0.710278,0.210121,4.12533e-06,0.640275,0.341296,0.457524,0.036687,0.00126604,0.303955,0.585566,0.373172,0.538803,0.685206,0.893074,0.706206,0.505417,0.596462,0.240432,0.619962,0.072382,0.681127,0.0312505,0.977195,0.834451,0.443364,0.715629,0.715255,0.0162987,0.954715,0.867478,0.41419,0.7547,0.294507,0.926591,0.346938,0.00193951,0.00120094,0.223035,0.783193,0.362009,0.611179,0.664218,0.516101,0.706724,0.654039,0.532798,0.685486,0.0903045,0.466416,0.411899,0.525367,0.667,0.748565,0.0195444,0.0407023,0.684382,0.573415,0.474724,0.661532,0.574524,0.570287,0.00600878,0.315643,0.00161631,0.490466,0.676249,0.760368,0.487711,0.440345,0.809866,0.0938229,0.0890104,0.179706,0.363579,0.21176,0.00362495,0.540565,0.855535,0.775603,0.118405,0.525188,0.657348,0.52794,0.67786,0.780554,0.646027,0.000503736,0.00193853,0.642069,0.31638,0.243699,0.826815,0.564763,0.0894143,0.00225639,0.364157,0.172412,0.53064,0.415017,0.0769041,0.387804,0.034016,0.385339,0.159832,0.0363719,0.338978,0.390233,0.339879,0.438999,0.41967,0.197678,0.208523,0.34551,0.4924,0.026431,0.497662,0.418843,0.749185,0.0787267,0.394729,0.0214171,0.118183,0.0758483,0.580249,0.436618,0.403472,0.382758,0.264429,0.404954,0.0744027,0.204325,0.265849,0.370442,0.451398,0.533438,0.188364,0.279598,0.420279,0.485091,0.00310316,0.150111,0.104304,0.514853,0.244241,0.307495,0.023925,0.3382,0.00349196,0.350305,0.0875262,0.147486,0.117583,0.103076,0.518238,0.40865,0.634608,0.0596356,0.25829,0.215261,0.235004,0.133496,0.433115,0.0622512,0.440492,0.397558,0.266168,0.504119,0.0115214,0.371725,0.00827957,0.500457,0.00065001,0.435107,0.26559,0.378345,0.380153,0.160696,0.502341,0.507413,0.412407,0.42955,0.103456,0.300222,0.393729,0.0304173,0.249956,0.000375427,0.482721,0.35808,0.406625,0.000480118,0.0153342,0.027448,0.00776783,0.0433206,0.499937,0.0219589,0.356463,0.011135,0.211724,0.409573,0.0118992,0.180313,0.436872,0.181464,0.40945,0.231548,0.120636,0.121001,0.317719,0.172653,0.0924531,0.120918,0.227375,0.0351249,0.425328,0.0132872,0.462521,0.0873107,0.179489,0.214126,0.143317,0.261663,0.14273,0.227254,0.0115311,0.168955,0.274981,0.236422,0.0999117,0.149301,0.196723,0.0836477,0.287028,0.413461,0.558766,0.187007,0.630108,0.299959,0.160183,0.0329198,0.0966304,0.452427,0.0513553,0.494497,0.366448,0.540845,0.511559,0.280842,0.0638873,0.416632,0.404559,0.545676,0.467154,0.600528,0.249647,0.0206178,0.0222581,0.248584,0.397145,0.0885545,0.537963,0.0441673,0.488863,0.342785,0.119442,0.0225867,0.0672363,0.449548,0.41929,0.209566,0.189123,0.0610821,0.355645,0.00812209,0.522124,0.158122,0.521096,0.220023,0.444217,0.00121006,0.0613546,0.432735,0.493369,0.10197,0.0890644
|tfbs_overrepresentation=0.31043,0.131575,0.947389,0.107813,0.405466,0.0462738,0.0974871,0.131367,0.0746874,0.0589549,0.295561,0.00327683,0.386236,0.269614,0.313114,0.138515,0.298536,0.214302,0.119001,0.234193,0.385995,0.282418,0.180923,0.20757,0.0943256,0.432377,0.422025,0.199011,0.303793,0.204444,0.414424,0.000212049,0.0415685,0.42006,0.148393,0.00124815,0.934067,0.097401,0.258596,0.148774,0.210798,0.0564873,0.296737,0.377815,0.259708,0.0825288,0.0864669,0.373342,0.240639,0.260266,0.000709819,0.12188,0.156121,0.203677,0.403772,0.0873518,0.232986,0.427667,0.173296,0.229205,0.0673274,0.314503,0.235283,0.168316,0.122724,0.113864,0.637,0.134457,0.189423,0.34721,0.670888,0.150845,0.195543,0.25669,0.0173573,0.0394864,0.210826,0.0989984,0.0847661,0.0168408,0.209062,0.451469,0.0963703,0.247724,0.552245,0.491847,0.143736,0.421411,0.888138,0.140328,0.00130549,0.111901,0.208559,0.107066,0.188008,0.248084,0.871457,0.322402,0.203166,0.526481,0.129026,0.174882,0.300234,0.0843602,0.438429,0.0929061,0.149379,0.618184,0.304684,0.519136,0.375285,0.0775356,0.314757,0.0407805,0.220427,0.0769904,0.0468147,0.127234,0.294794,0.184794,0.346582,0.431052,0.296899,0.188824,0.222747,0.365096,0.198942,0.034178,0.185876,0.0457956,0.133529,0.165976,0.128445,0.0523619,0.269253,0.234279,0.144853,0.124383,0.0754012,0.00920461,0.052339,0.272785,0.412653,0.326814,0.879733,0.154324,0.215565,0.1856,0.0885156,0.259543,0.0971196,0.30366,0.371915,0.0609284,0.0968299,0.253074,0.165818,0.123538,0.116496,0.0769293,0.00341668,0.208356,0.251281,0.311437,0.525489,0.0332702,0.0909267,0.272323,0.0916381,0.217617,0.370083,0.292316,0.766596,0.121785,0.17666,0.197691,0.297301,0.373889,0.367859,0.0811784,0.332099,0.262763,0.0627829,0.249166,0.16364,0.255634,0.00141861,0.0912436,0.18278,0.35905,0.232364,0.0131971,0.263667,0.45461,0.243403,0.106408,0.173147,0.135052,0.150784,0.237426,0.196091,0.135293,0.0704675,0.135734,0.289872,0.00577396,0.525644,0.319069,0.0175277,0.367697,0.103767,0.226759,0.260173,0.243859,0.0122386,0.350868,0.00895684,0.219863,0.140859,0.224003,0.300341,0.662833,0.32693,0.336135,0.163924,0.270849,0.294471,0.189218,0.135411,0.134214,0.860233,0.678094,0.0949171,0.169481,0.000105869,0.204086,0.106746,0.160103,0.340697,0.431213,0.0812749,0.63269,0.214704,0.183242,0.25057,0.290614,0.179951,0.241366,0.663276,0.252043,6.42975e-05,0.37985,0.380877,0.213951,0.214075,0.333636,0.232558,0.409093,0.154888,0.869652,0.138561,0.361831,0.340466,0.273737,0.0786852,0.179028,0.179229,0.201771,0.254117,0.16741,0.532883,0.141494,0.496492,0.748734,0.190495,0.0865316,0.27777,0.871477,0.787698,0.971688,0.905319,0.575229,0.380957,0.535046,0.614575,0.408427,0.507115,0.74825,0.664373,0.214092,0.793549,0.241042,0.691446,0.606605,0.532767,0.186918,0.523169,0.19345,0.0015928,0.693154,0.603039,0.880156,0.38355,0.6506,0.373708,0.723928,0.238054,0.60842,0.437154,0.727324,0.100365,0.765804,0.439013,0.256939,0.511801,0.0957838,0.71452,0.78693,0.494595,0.530579,0.205002,0.0699586,0.589017,0.445808,0.225057,0.884305,0.54096,0.586014,0.0536716,0.552809,0.750148,0.865425,0.715851,0.554465,0.779369,0.741035,0.298206,0.866143,0.64314,0.374876,0.942661,0.981994,0.830709,0.528337,0.467165,0.380732,0.62916,0.266616,0.16893,0.899187,0.804395,0.814166,0.821424,0.486761,0.537738,0.775056,0.340223,0.14951,0.162309,0.379192,0.62513,0.965193,0.332632,0.711307,0.263267,0.0398914,0.288537,0.750089,0.437649,0.583275,0.523849,0.102102,0.165804,0.454926,0.702452,0.874639,0.80356,0.557198,0.0768885,0.77992,0.549109,0.236455,0.931576,0.532418,0.340787,0.729146,0.453428,0.61578,0.401761,0.327395,0.858503,0.721107,0.20071,0.363777,0.241579,0.942161,0.246698,0.0524225,0.0529282,0.314229,0.667503,0.749333,0.175626,0.0315444,0.320625,0.10531,0.291113,0.503499,0.286678,0.215083,0.0115595,0.555733,0.542255,0.625729,0.574375,0.57326,0.883094,0.224884,0.822125,0.542308,0.159495,0.646316,0.450384,0.34286,0.358681,0.651741,0.767511,0.961929,0.416603,0.51876,0.704347,0.738461,0.518983,0.619771,0.846682,0.537511,0.300014,0.0557631,0.820036,0.33353,0.000512615,0.0968895,0.460268,0.387548,0.195754,0.133496,0.518162,0.19873,0.630454,0.539782,0.265981,0.777717,0.122637,0.21899,0.409678,0.588029,0.15528,0.125135,0.392877,0.172615,0.129203,0.304883,0.11859,0.412193,0.744608,0.743378,0.0141468,0.241931,0.54931,0.0986558,0.569749,0.270589,0.2868,0.231853,0.525257,0.140425,0.673929,0.0412928,0.570618,0.535059,0.684902,0.105116,0.351863,0.247203,0.227166,0.197433,0.190714,0.333925,0.232295,0.0993709,0.00905448,0.264955,0.275796,0.42369,0.394858,0.62923,0.112748,0.182834,0.148755,0.374546,0.240628,0.438923,0.61103,0.398206,0.28169,0.3861,0.108827,0.405826,0.703418,0.273081,0.363066,0.378645,0.35119,0.192669,0.208253,0.0260665,0.00310839,0.232159,0.528175,0.0111948,0.359315,0.298797,0.425775,0.0687597,0.280435,0.10082,0.117938,0.421126,0.321571,0.176362,0.212715,0.334514,0.264825,0.19886,0.125399,0.539304,0.817594,0.291561,0.0337354,0.146629,0.426032,0.1158,0.177111,0.167984,0.0647522,0.00176382,0.123448,0.17256,0.126216,0.00463747,0.0787488,0.0883646,0.496336,6.54437e-06,0.407665,0.11039,0.0750505,0.660283,0.0754745,0.632378,0.439214,0.0896836,0.133679,0.000348514,0.262768,0.235824,0.23812,0.506939,0.0654706,0.844302,0.000549587,0.0883079,0.192275,0.123717,0.3044,0.494788,0.435034,0.00165036,0.27954,0.689314,0.0040197,0.545823,0.168686,0.35711,0.180717,0.0814673,0.614081,0.311267,0.299453,0.347601,0.297851,0.195385,0.578705,0.546003,0.106912,0.207535,0.747423,0.283013,0.17144,0.236468,0.274647,0.280244,0.933654,0.750867,0.1168,0.216736,0.112879,0.138362,0.1674,0.205022,0.304414,0.0775871,0.1646,0.530976,0.956744,0.916686,0.435374,0.190081,0.25636,0.392755,0.366993,0.843094,0.12921,0.107541,0.324602,0.136306,0.362226,0.565792,0.158567,0.446426,0.551931,0.0810658,0.268889,0.361819,0.996492,0.998378,0.417001,0.436925,0.234633,0.150144,0.00264495,0.111506,0.209512,0.415762,0.167545,0.1033,0.238509,0.156356,0.450242,0.322099,0.0857464,0.282499,0.101873,0.121306,0.246526,0.203595,0.356991,0.227948,0.44271,0.128341,0.463619,0.168391,0.545636,0.320047,0.397073,0.437057,0.221207,0.603174,0.358,0.621995,0.318595,0.140173,0.390753,0.0550548,0.805801,0.326484,0.15977,0.201434,0.134947,0.304849,0.316782,0.212636,0.325012,0.353123,0.394821,0.291345,0.00344244,0.00509407,0.547467,0.255995,0.184894,0.609179,0.244347,0.243363,0.382464,0.361244,0.207462,0.51104,0.487422,0.29768,0.217499,0.500934,0.225368,0.244195,0.0586175,0.348776,0.198885,0.608664,0.347052,0.386025,0.1797,0.379465,0.327304,0.217315,0.0892444,0.132491,0.48467,0.367752,0.436987,0.458334,0.704893,0.895348,0.0821811,0.71056,0.279549,0.0984834,0.284421,0.71736,0.00495141,0.751141,0.344864,0.458949,0.279105,0.741039,0.659829,0.14201,0.750889,0.401507,0.330231,0.648881,0.123881,0.0272023,0.601152,0.910041,0.147508,0.0329228,0.684866,0.790371,0.481522,0.744931,0.0972319,0.954926,0.951598,0.451787,0.818359,0.00826896,0.680172,0.542303,0.805952,0.846379,0.192833,0.54891,0.341975,0.178566,0.00135236,0.863925,0.780774,0.615729,0.433619,0.154752,0.74852,0.478352,0.969954,0.32181,0.954834,0.931591,0.337191,0.407631,0.910621,0.797881,0.976385,0.664234,0.972335,0.779967,0.971958,0.621436,0.96824,0.411785,0.40673,0.415502,0.203449,0.499305,0.0105063,0.0191281,0.676266,0.327011,0.299176,0.710278,0.210121,4.12533e-06,0.640275,0.341296,0.457524,0.036687,0.00126604,0.303955,0.585566,0.373172,0.538803,0.685206,0.893074,0.706206,0.505417,0.596462,0.240432,0.619962,0.072382,0.681127,0.0312505,0.977195,0.834451,0.443364,0.715629,0.715255,0.0162987,0.954715,0.867478,0.41419,0.7547,0.294507,0.926591,0.346938,0.00193951,0.00120094,0.223035,0.783193,0.362009,0.611179,0.664218,0.516101,0.706724,0.654039,0.532798,0.685486,0.0903045,0.466416,0.411899,0.525367,0.667,0.748565,0.0195444,0.0407023,0.684382,0.573415,0.474724,0.661532,0.574524,0.570287,0.00600878,0.315643,0.00161631,0.490466,0.676249,0.760368,0.487711,0.440345,0.809866,0.0938229,0.0890104,0.179706,0.363579,0.21176,0.00362495,0.540565,0.855535,0.775603,0.118405,0.525188,0.657348,0.52794,0.67786,0.780554,0.646027,0.000503736,0.00193853,0.642069,0.31638,0.243699,0.826815,0.564763,0.0894143,0.00225639,0.364157,0.172412,0.53064,0.415017,0.0769041,0.387804,0.034016,0.385339,0.159832,0.0363719,0.338978,0.390233,0.339879,0.438999,0.41967,0.197678,0.208523,0.34551,0.4924,0.026431,0.497662,0.418843,0.749185,0.0787267,0.394729,0.0214171,0.118183,0.0758483,0.580249,0.436618,0.403472,0.382758,0.264429,0.404954,0.0744027,0.204325,0.265849,0.370442,0.451398,0.533438,0.188364,0.279598,0.420279,0.485091,0.00310316,0.150111,0.104304,0.514853,0.244241,0.307495,0.023925,0.3382,0.00349196,0.350305,0.0875262,0.147486,0.117583,0.103076,0.518238,0.40865,0.634608,0.0596356,0.25829,0.215261,0.235004,0.133496,0.433115,0.0622512,0.440492,0.397558,0.266168,0.504119,0.0115214,0.371725,0.00827957,0.500457,0.00065001,0.435107,0.26559,0.378345,0.380153,0.160696,0.502341,0.507413,0.412407,0.42955,0.103456,0.300222,0.393729,0.0304173,0.249956,0.000375427,0.482721,0.35808,0.406625,0.000480118,0.0153342,0.027448,0.00776783,0.0433206,0.499937,0.0219589,0.356463,0.011135,0.211724,0.409573,0.0118992,0.180313,0.436872,0.181464,0.40945,0.231548,0.120636,0.121001,0.317719,0.172653,0.0924531,0.120918,0.227375,0.0351249,0.425328,0.0132872,0.462521,0.0873107,0.179489,0.214126,0.143317,0.261663,0.14273,0.227254,0.0115311,0.168955,0.274981,0.236422,0.0999117,0.149301,0.196723,0.0836477,0.287028,0.413461,0.558766,0.187007,0.630108,0.299959,0.160183,0.0329198,0.0966304,0.452427,0.0513553,0.494497,0.366448,0.540845,0.511559,0.280842,0.0638873,0.416632,0.404559,0.545676,0.467154,0.600528,0.249647,0.0206178,0.0222581,0.248584,0.397145,0.0885545,0.537963,0.0441673,0.488863,0.342785,0.119442,0.0225867,0.0672363,0.449548,0.41929,0.209566,0.189123,0.0610821,0.355645,0.00812209,0.522124,0.158122,0.521096,0.220023,0.444217,0.00121006,0.0613546,0.432735,0.493369,0.10197,0.0890644
|tfbs_overrepresentation_for_novel_motifs=0.392069,0.100351,0.384703,0.529489,0.343148,0.52784,0.604235,0.226729,0.224331,0.443077,0.497563,0.647852,1.03506,1.44576,0.341795,0.365029,0.827563,0.28906,1.08139,0.32524,1.00032,1.80169,0.520063,0.897212,0.430372,0.670692,0.957451,1.28759,0.346214,0.898182,0.475674,3.32485,0.714156,0.186138,0.309012,1.05693,0.305874,1.3112,0.282922,0.597792,0.307642,0.459366,0.254304,0.340293,0.109128,0.415364,2.50499,2.11685,0.876276,1.63856,0.684981,0.617179,1.23204,0.941629,1.09491,0.595623,0.350547,0.562713,0.150585,0.561701,0.905643,0.60771,1.19465,0.799729,1.51519,0.76514,1.18348,1.55228,0.854088,1.38987,0.4462,0.656075,0.369103,1.0929,0.179863,0.503161,0.473656,0.782748,0.850825,0.424224,0.580264,0.798651,0.625403,0.649554,1.04131,0.0324537,0.097572,0.448771,0.711163,1.65172,1.27705,1.01423,0.881388,2.06836,0.343884,0.759662,0.194299,0.924148,0.715799,0.132387,0.28424,0.875714,0.918549,0.831244,1.78098,0.493026,0.815341,0.589207,0.43012,0.327379,2.71339,0.915771,0.988112,0.507004,1.22894,0.304323,0.358137,0.474472,0.762789,0.26701,1.0846,0.708722,0.525076,0.636741,1.33983,0.783512,0.597853,0.886402,1.12733,0.27799,1.01492,0.47854,1.14174,0.633392,1.28996,4.22331,0.469685,0.518459,1.24743,2.10682,1.70417,1.21002,2.48645,0.920609,0.755332,0.554217,0.738579,1.94751,0.456039,0.26104,2.31423,0.0685123,1.0153,0.216774,0.607223,1.42052,0.694887,0.877715,1.92821,0.401655,1.2088,0.996724,1.97961,0.404861,0.7715,0.624608,0.24928,0.602897,0.377843
}}
}}

Revision as of 14:43, 26 November 2012


Full id: C1153_Monocytederived_CD14_Dendritic_Macrophage_acute_spleen_lymph



Phase1 CAGE Peaks

Hg19::chr11:72983377..72983428,+p1@P2RY6
Hg19::chr11:72983450..72983455,+p11@P2RY6
Hg19::chr1:159796094..159796108,-p@chr1:159796094..159796108
-
Hg19::chr1:159796534..159796545,+p6@SLAMF8
Hg19::chr1:159796561..159796581,+p4@SLAMF8
Hg19::chr1:159796620..159796645,+p3@SLAMF8
Hg19::chr1:159796650..159796690,+p1@SLAMF8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0045029UDP-activated nucleotide receptor activity0.00326730049767864
GO:0015065uridine nucleotide receptor activity0.00326730049767864
GO:0030321transepithelial chloride transport0.005808106742807
GO:0045028purinergic nucleotide receptor activity, G-protein coupled0.0136832824560085
GO:0001608nucleotide receptor activity, G-protein coupled0.0136832824560085
GO:0001614purinergic nucleotide receptor activity0.0136832824560085
GO:0016502nucleotide receptor activity0.0136832824560085
GO:0006821chloride transport0.0212713128400425
GO:0007200G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)0.0212713128400425
GO:0048015phosphoinositide-mediated signaling0.02804667290501
GO:0015698inorganic anion transport0.0484567284829324
GO:0019932second-messenger-mediated signaling0.0484567284829324



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
macrophage dendritic cell progenitor8.49e-4361
monopoietic cell6.56e-4059
monocyte6.56e-4059
monoblast6.56e-4059
promonocyte6.56e-4059
granulocyte monocyte progenitor cell9.49e-3867
defensive cell4.28e-3648
phagocyte4.28e-3648
myeloid lineage restricted progenitor cell2.62e-3466
myeloid leukocyte5.46e-3272
classical monocyte8.02e-2742
CD14-positive, CD16-negative classical monocyte8.02e-2742
myeloid cell1.92e-19108
common myeloid progenitor1.92e-19108
nongranular leukocyte2.87e-18115
hematopoietic lineage restricted progenitor cell3.41e-18120
leukocyte3.30e-16136
stuff accumulating cell5.52e-1587
macrophage3.54e-126
hematopoietic oligopotent progenitor cell5.71e-11161
hematopoietic multipotent progenitor cell5.71e-11161
hematopoietic stem cell1.22e-10168
angioblastic mesenchymal cell1.22e-10168
hematopoietic cell1.77e-09177
immature conventional dendritic cell3.68e-085
common dendritic progenitor3.68e-085
adult endothelial progenitor cell4.83e-073
Uber Anatomy
Ontology termp-valuen
immune system1.10e-3293
adult organism7.14e-32114
bone marrow1.12e-3176
hematopoietic system1.28e-2898
blood island1.28e-2898
bone element2.22e-2882
hemolymphoid system2.52e-27108
skeletal element1.12e-2490
skeletal system6.62e-21100
lateral plate mesoderm8.77e-14203
organ3.14e-13503
musculoskeletal system3.90e-10167
neural tube7.48e-0956
neural rod7.48e-0956
future spinal cord7.48e-0956
neural keel7.48e-0956
anatomical system9.42e-09624
anatomical group1.08e-08625
multi-cellular organism4.96e-08656
germ layer5.11e-08560
germ layer / neural crest5.11e-08560
embryonic tissue5.11e-08560
presumptive structure5.11e-08560
germ layer / neural crest derived structure5.11e-08560
epiblast (generic)5.11e-08560
neural nucleus7.38e-089
nucleus of brain7.38e-089
mesoderm7.85e-08315
mesoderm-derived structure7.85e-08315
presumptive mesoderm7.85e-08315
embryonic structure8.73e-08564
regional part of nervous system9.08e-0853
regional part of brain9.08e-0853
developing anatomical structure9.16e-08581
embryo3.76e-07592


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
MAFF#23764216.090101854270.006238346814265030.0275300728021223
MAX#414976.452555509007122.14589603858566e-067.76560070595454e-05
MYC#460975.22228187160949.4355989882785e-060.000250876915157031
NFKB1#479053.92004530299560.003036581424484610.0161179877714855
SMARCC1#6599212.47524551989470.01020047316571840.0379877056395117



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.