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Coexpression cluster:C59: Difference between revisions

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|pathway_enrichment=0.000481694892022353;0.030491286665015;2;200;Focal adhesion (KEGG):04510!8.71154780629587e-05;0.00919068293564215;2;85;ECM-receptor interaction (KEGG):04512!7.90849808217909e-05;0.00919068293564215;2;81;Protein digestion and absorption (KEGG):04974!0.000135597657293231;0.0107291646333269;2;106;Amoebiasis (KEGG):05146!0.000425848206009;0.029951323822633;2;188;Focal Adhesion (Wikipathways):WP306!1.13900315595625e-05;0.00720988997720308;2;31;Inflammatory Response Pathway (Wikipathways):WP453!0.000120663279167051;0.0107291646333269;2;100;Senescence and Autophagy (Wikipathways):WP615!8.71154780629587e-05;0.00919068293564215;2;85;Integrin cell surface interactions (Reactome):REACT_13552!4.21831510575296e-05;0.00919068293564215;3;466;Hemostasis (Reactome):REACT_604!5.08276270087817e-05;0.00919068293564215;2;65;Signaling by PDGF (Reactome):REACT_16888!0.000842854829985519;0.0485024643073485;2;265;Axon guidance (Reactome):REACT_18266
|pathway_enrichment=0.000481694892022353;0.030491286665015;2;200;Focal adhesion (KEGG):04510!8.71154780629587e-05;0.00919068293564215;2;85;ECM-receptor interaction (KEGG):04512!7.90849808217909e-05;0.00919068293564215;2;81;Protein digestion and absorption (KEGG):04974!0.000135597657293231;0.0107291646333269;2;106;Amoebiasis (KEGG):05146!0.000425848206009;0.029951323822633;2;188;Focal Adhesion (Wikipathways):WP306!1.13900315595625e-05;0.00720988997720308;2;31;Inflammatory Response Pathway (Wikipathways):WP453!0.000120663279167051;0.0107291646333269;2;100;Senescence and Autophagy (Wikipathways):WP615!8.71154780629587e-05;0.00919068293564215;2;85;Integrin cell surface interactions (Reactome):REACT_13552!4.21831510575296e-05;0.00919068293564215;3;466;Hemostasis (Reactome):REACT_604!5.08276270087817e-05;0.00919068293564215;2;65;Signaling by PDGF (Reactome):REACT_16888!0.000842854829985519;0.0485024643073485;2;265;Axon guidance (Reactome):REACT_18266
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|tfbs_overrepresentation_for_novel_motifs=0.000240856,1.76251,0.00111544,1.30958,0.138569,0.0913151,0.176005,2.21569,0.168067,0.0795209,5.73787e-06,0.124329,0.00307503,0.0970217,0.0983978,16.1745,0.0413937,0.532748,6.51944,0.348258,0.965737,1.32224,0.00283295,0.421955,0.120339,1.63483e-05,2.0985,0.0470579,7.35699e-06,1.11278,0.00074495,84.8269,0.137167,5.89649,0.000166822,0.169016,1.94489e-06,0.764171,0.265959,0.0134187,0.234888,0.198211,2.91323,0.865717,0.161719,8.48262e-07,0.0030888,0.000352965,2.65715,1.07789,0.01454,0.537939,0.202333,0.121522,0.545244,0.72733,0.618229,0.223408,7.2133,0.0601814,0.0104574,0.00325921,2.51827,0.0023859,0.322715,0.390743,0.0251882,0.154424,0.0551358,0.0815247,5.84887e-07,0.0592739,2.29618e-07,0.319832,4.83533e-08,0.101788,3.63795,0.05638,1.82056,0.151,1.75325,0.0100116,0.578094,0.660849,0.00767433,6.12348e-15,8.19678e-16,1.43714,0.00822035,1.13947,0.0457256,0.0319064,2.0668,0.262488,1.66845e-06,1.30937,1.58704,1.32083,0.00888592,0.0015258,0.778819,0.0265346,0.0018622,0.0155684,0.682207,4.77194e-06,0.00305684,0.0141392,0.00258884,2.32486e-11,0.942951,0.504975,0.0078613,0.28831,4.08884,0.923268,9.76883e-10,0.0331547,1.18142,0.883336,0.0115071,0.00788598,0.087254,0.108069,0.0641202,0.0080232,0.238741,0.00826165,0.194946,1.98211,0.00586541,0.347856,0.210867,0.348237,0.0491972,0.00331208,0.117755,0.332907,0.0383557,1.35102,0.243177,0.03021,0.106929,0.10246,0.897624,1.34947,1.83658,0.417765,0.188016,2.07045e-07,0.000726595,0,3.26553,2.62191,0.0399142,0.0933882,1.72532,0.0997177,0.717223,2.28157e-06,0.0299659,0.0824436,0.20398,2.6198e-10,0.573501,2.42508,2.72602,1.8718,1.00451
}}
}}

Revision as of 13:16, 26 November 2012


Full id: C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic



Phase1 CAGE Peaks

Hg19::chr17:48261631..48261646,-p@chr17:48261631..48261646
-
Hg19::chr17:48261650..48261656,-p@chr17:48261650..48261656
-
Hg19::chr17:48261658..48261673,-p@chr17:48261658..48261673
-
Hg19::chr17:48261706..48261714,-p@chr17:48261706..48261714
-
Hg19::chr17:48261731..48261748,-p@chr17:48261731..48261748
-
Hg19::chr17:48261749..48261844,-p@chr17:48261749..48261844
-
Hg19::chr17:48261877..48261964,-p@chr17:48261877..48261964
-
Hg19::chr17:48261981..48262027,-p@chr17:48261981..48262027
-
Hg19::chr17:48262059..48262105,-p@chr17:48262059..48262105
-
Hg19::chr17:48262109..48262118,-p@chr17:48262109..48262118
-
Hg19::chr17:48262303..48262317,-p@chr17:48262303..48262317
-
Hg19::chr17:48262320..48262327,-p@chr17:48262320..48262327
-
Hg19::chr17:48262372..48262376,-p@chr17:48262372..48262376
-
Hg19::chr17:48262424..48262433,-p@chr17:48262424..48262433
-
Hg19::chr17:48262471..48262492,-p@chr17:48262471..48262492
-
Hg19::chr17:48262517..48262540,-p@chr17:48262517..48262540
-
Hg19::chr17:48262521..48262531,+p8@AB032018
Hg19::chr17:48262538..48262596,+p3@AB032018
Hg19::chr17:48262548..48262561,-p@chr17:48262548..48262561
-
Hg19::chr17:48262579..48262582,-p@chr17:48262579..48262582
-
Hg19::chr17:48262626..48262656,+p1@AB032018
Hg19::chr17:48262662..48262702,+p2@AB032018
Hg19::chr17:48262718..48262726,+p4@AB032018
Hg19::chr17:48262749..48262800,+p2@CU691369
Hg19::chr17:48262750..48262761,-p23@COL1A1
Hg19::chr17:48262790..48262905,-p3@COL1A1
Hg19::chr17:48262810..48262902,+p1@CU691369
Hg19::chr17:48262908..48262943,+p4@CU691369
Hg19::chr17:48262913..48262927,-p9@COL1A1
Hg19::chr17:48262950..48262971,+p3@CU691369
Hg19::chr17:48262983..48262995,-p31@COL1A1
Hg19::chr17:48263008..48263015,-p34@COL1A1
Hg19::chr17:48263132..48263177,+p@chr17:48263132..48263177
+
Hg19::chr17:48263174..48263189,-p2@COL1A1
Hg19::chr17:48263186..48263196,+p@chr17:48263186..48263196
+
Hg19::chr17:48263223..48263298,+p@chr17:48263223..48263298
+
Hg19::chr17:48263316..48263349,+p@chr17:48263316..48263349
+
Hg19::chr17:48263353..48263364,+p@chr17:48263353..48263364
+
Hg19::chr17:48263361..48263372,-p10@COL1A1
Hg19::chr17:48263684..48263743,+p@chr17:48263684..48263743
+
Hg19::chr17:48263697..48263732,-p@chr17:48263697..48263732
-
Hg19::chr17:48263738..48263761,-p@chr17:48263738..48263761
-
Hg19::chr17:48263753..48263758,+p@chr17:48263753..48263758
+
Hg19::chr17:48263765..48263788,+p@chr17:48263765..48263788
+
Hg19::chr17:48263775..48263804,-p@chr17:48263775..48263804
-
Hg19::chr17:48263814..48263827,+p@chr17:48263814..48263827
+
Hg19::chr17:48263816..48263826,-p@chr17:48263816..48263826
-
Hg19::chr17:48263831..48263873,-p@chr17:48263831..48263873
-
Hg19::chr17:48264002..48264028,+p@chr17:48264002..48264028
+
Hg19::chr17:48264023..48264034,-p46@COL1A1
Hg19::chr17:48264032..48264093,+p@chr17:48264032..48264093
+
Hg19::chr17:48264045..48264073,-p6@COL1A1
Hg19::chr17:48264096..48264115,+p@chr17:48264096..48264115
+
Hg19::chr17:48264102..48264133,-p8@COL1A1
Hg19::chr17:48264135..48264149,-p33@COL1A1
Hg19::chr17:48264154..48264192,-p12@COL1A1
Hg19::chr17:48264177..48264238,+p@chr17:48264177..48264238
+
Hg19::chr17:48264220..48264260,-p16@COL1A1
Hg19::chr17:48264267..48264295,-p24@COL1A1
Hg19::chr17:48264368..48264380,+p@chr17:48264368..48264380
+
Hg19::chr17:48264399..48264490,-p11@COL1A1
Hg19::chr17:48264872..48264908,-p@chr17:48264872..48264908
-
Hg19::chr17:48265259..48265297,+p@chr17:48265259..48265297
+
Hg19::chr17:48265264..48265325,-p1@Y15912
p1@Y15914
Hg19::chr17:48265299..48265317,+p@chr17:48265299..48265317
+
Hg19::chr17:48265330..48265352,-p2@Y15912
p2@Y15914
Hg19::chr17:48265451..48265474,+p@chr17:48265451..48265474
+
Hg19::chr17:48265475..48265515,-p40@COL1A1
Hg19::chr17:48265923..48266006,-p15@COL1A1
Hg19::chr17:48266123..48266159,-p25@COL1A1
Hg19::chr17:48266255..48266282,+p@chr17:48266255..48266282
+
Hg19::chr17:48266283..48266378,-p18@COL1A1
Hg19::chr17:48266311..48266336,+p@chr17:48266311..48266336
+
Hg19::chr17:48266543..48266569,+p@chr17:48266543..48266569
+
Hg19::chr17:48266548..48266566,-p53@COL1A1
Hg19::chr17:48266579..48266595,-p54@COL1A1
Hg19::chr17:48266596..48266640,-p29@COL1A1
Hg19::chr17:48266758..48266778,-p50@COL1A1
Hg19::chr17:48266783..48266900,-p13@COL1A1
Hg19::chr17:48266837..48266866,+p@chr17:48266837..48266866
+
Hg19::chr17:48267058..48267099,-p2@Y16346
Hg19::chr17:48267241..48267277,-p3@Y16346
Hg19::chr17:48267383..48267484,-p1@Y16346
Hg19::chr17:48267707..48267746,-p@chr17:48267707..48267746
-
Hg19::chr17:48267934..48267964,-p1@Y15913
p1@Y15915
p1@Y15919
Hg19::chr17:48268194..48268230,-p43@COL1A1
Hg19::chr17:48268232..48268300,-p26@COL1A1
Hg19::chr17:48268768..48268861,-p14@COL1A1
Hg19::chr17:48269169..48269186,-p2@Y15916
Hg19::chr17:48269180..48269221,+p@chr17:48269180..48269221
+
Hg19::chr17:48269193..48269251,-p1@Y15916
Hg19::chr17:48269369..48269390,-p48@COL1A1
Hg19::chr17:48269863..48269900,-p45@COL1A1
Hg19::chr17:48270002..48270030,+p@chr17:48270002..48270030
+
Hg19::chr17:48270020..48270059,-p41@COL1A1
Hg19::chr17:48270155..48270188,+p@chr17:48270155..48270188
+
Hg19::chr17:48270182..48270219,-p52@COL1A1
Hg19::chr17:48270352..48270384,+p@chr17:48270352..48270384
+
Hg19::chr17:48270370..48270427,-p1@X98708
p1@Y15918
Hg19::chr17:48271320..48271413,-p21@COL1A1
Hg19::chr17:48271512..48271560,-p36@COL1A1
Hg19::chr17:48271701..48271751,+p@chr17:48271701..48271751
+
Hg19::chr17:48271731..48271815,-p22@COL1A1
Hg19::chr17:48271928..48271965,+p@chr17:48271928..48271965
+
Hg19::chr17:48271957..48271994,-p37@COL1A1
Hg19::chr17:48272098..48272147,-p19@COL1A1
Hg19::chr17:48272114..48272152,+p@chr17:48272114..48272152
+
Hg19::chr17:48272163..48272166,-p58@COL1A1
Hg19::chr17:48272167..48272190,-p42@COL1A1
Hg19::chr17:48272401..48272431,+p@chr17:48272401..48272431
+
Hg19::chr17:48272431..48272469,-p1@Y15917
Hg19::chr17:48272618..48272661,-p20@COL1A1
Hg19::chr17:48272664..48272696,-p44@COL1A1
Hg19::chr17:48272818..48272860,-p49@COL1A1
Hg19::chr17:48272916..48272940,+p@chr17:48272916..48272940
+
Hg19::chr17:48272951..48272983,-p30@COL1A1
Hg19::chr17:48272988..48273034,-p28@COL1A1
Hg19::chr17:48273307..48273347,-p35@COL1A1
Hg19::chr17:48273510..48273539,+p@chr17:48273510..48273539
+
Hg19::chr17:48273537..48273574,-p1@S64717
Hg19::chr17:48273661..48273705,+p@chr17:48273661..48273705
+
Hg19::chr17:48273697..48273736,-p47@COL1A1
Hg19::chr17:48273866..48273902,-p51@COL1A1
Hg19::chr17:48274000..48274037,-p39@COL1A1
Hg19::chr17:48274398..48274435,-p32@COL1A1
Hg19::chr17:48274562..48274599,-p1@S67495
Hg19::chr17:48275117..48275151,-p@chr17:48275117..48275151
-
Hg19::chr17:48275332..48275372,-p@chr17:48275332..48275372
-
Hg19::chr17:48275543..48275577,-p1@S83315
Hg19::chr17:48275813..48275818,-p57@COL1A1
Hg19::chr17:48275829..48275874,-p17@COL1A1
Hg19::chr17:48276607..48276688,-p@chr17:48276607..48276688
-
Hg19::chr17:48276617..48276653,+p@chr17:48276617..48276653
+
Hg19::chr17:48276798..48276821,-p@chr17:48276798..48276821
-
Hg19::chr17:48276910..48276930,+p@chr17:48276910..48276930
+
Hg19::chr17:48276936..48276972,-p@chr17:48276936..48276972
-
Hg19::chr17:48277131..48277184,+p@chr17:48277131..48277184
+
Hg19::chr17:48277133..48277317,-p4@COL1A1
Hg19::chr17:48277213..48277223,+p@chr17:48277213..48277223
+
Hg19::chr17:48277234..48277288,+p@chr17:48277234..48277288
+
Hg19::chr17:48278760..48278786,+p@chr17:48278760..48278786
+
Hg19::chr17:48278787..48278869,+p@chr17:48278787..48278869
+
Hg19::chr17:48278983..48278999,-p1@COL1A1
Hg19::chr1:224983437..224983438,+p@chr1:224983437..224983438
+
Hg19::chr2:189899879..189899890,-p@chr2:189899879..189899890
-
Hg19::chr2:189975013..189975042,-p@chr2:189975013..189975042
-
Hg19::chr3:120118781..120118794,-p13@FSTL1
Hg19::chr5:151041617..151041628,-p@chr5:151041617..151041628
-
Hg19::chr5:151042161..151042178,-p@chr5:151042161..151042178
-
Hg19::chr5:151042201..151042272,-p@chr5:151042201..151042272
-
Hg19::chr5:151042323..151042359,-p@chr5:151042323..151042359
-
Hg19::chr5:151042388..151042426,-p@chr5:151042388..151042426
-
Hg19::chr5:151042435..151042447,-p@chr5:151042435..151042447
-
Hg19::chr5:151042450..151042476,-p@chr5:151042450..151042476
-
Hg19::chr5:151042516..151042554,-p@chr5:151042516..151042554
-
Hg19::chr5:151042551..151042574,+p@chr5:151042551..151042574
+
Hg19::chr5:151042613..151042631,-p@chr5:151042613..151042631
-
Hg19::chr5:151042678..151042697,-p@chr5:151042678..151042697
-
Hg19::chr5:151042725..151042748,-p@chr5:151042725..151042748
-
Hg19::chr5:151042823..151042844,-p@chr5:151042823..151042844
-
Hg19::chr5:151042845..151042868,-p@chr5:151042845..151042868
-
Hg19::chr5:151042941..151042979,-p@chr5:151042941..151042979
-
Hg19::chr5:151042981..151043046,+p@chr5:151042981..151043046
+
Hg19::chr5:151042986..151043017,-p@chr5:151042986..151043017
-
Hg19::chr5:151043018..151043069,-p@chr5:151043018..151043069
-
Hg19::chr5:151043071..151043166,-p@chr5:151043071..151043166
-
Hg19::chr5:151043654..151043703,+p@chr5:151043654..151043703
+
Hg19::chr5:151043671..151043682,-p@chr5:151043671..151043682
-
Hg19::chr5:151043701..151043704,-p@chr5:151043701..151043704
-
Hg19::chr5:151043714..151043725,-p@chr5:151043714..151043725
-
Hg19::chr5:151043716..151043733,+p@chr5:151043716..151043733
+
Hg19::chr5:151043733..151043775,-p@chr5:151043733..151043775
-
Hg19::chr5:151043787..151043805,-p@chr5:151043787..151043805
-
Hg19::chr5:151045945..151046004,-p2@AK126525
Hg19::chr5:151045968..151045998,+p@chr5:151045968..151045998
+
Hg19::chr5:151046007..151046075,-p1@AK126525
Hg19::chr5:151046019..151046049,+p@chr5:151046019..151046049
+
Hg19::chr5:151047017..151047037,+p@chr5:151047017..151047037
+
Hg19::chr5:151047050..151047078,+p@chr5:151047050..151047078
+
Hg19::chr5:151047055..151047075,-p5@SPARC
Hg19::chr5:151047094..151047114,-p9@SPARC
Hg19::chr5:151047107..151047139,+p@chr5:151047107..151047139
+
Hg19::chr5:151047121..151047143,-p12@SPARC
Hg19::chr5:151049247..151049281,-p@chr5:151049247..151049281
-
Hg19::chr5:151049251..151049282,+p@chr5:151049251..151049282
+
Hg19::chr5:151049288..151049300,-p@chr5:151049288..151049300
-
Hg19::chr5:151049316..151049353,-p@chr5:151049316..151049353
-
Hg19::chr5:151051121..151051183,+p@chr5:151051121..151051183
+
Hg19::chr5:151051155..151051191,-p6@SPARC
Hg19::chr5:151051195..151051216,-p10@SPARC
Hg19::chr5:151051220..151051229,-p13@SPARC
Hg19::chr5:151051242..151051266,-p7@SPARC
Hg19::chr5:151052705..151052723,+p@chr5:151052705..151052723
+
Hg19::chr5:151052726..151052744,+p@chr5:151052726..151052744
+
Hg19::chr5:151052758..151052772,-p@chr5:151052758..151052772
-
Hg19::chr5:151054160..151054186,+p@chr5:151054160..151054186
+
Hg19::chr5:151054190..151054248,-p8@SPARC
Hg19::chr5:151055721..151055772,-p11@SPARC
Hg19::chr5:151066469..151066483,-p1@SPARC
Hg19::chr5:151066486..151066501,-p2@SPARC
Hg19::chr5:151066514..151066529,-p3@SPARC
Hg19::chr7:94024199..94024213,+p1@COL1A2
Hg19::chr7:94029498..94029517,+p@chr7:94029498..94029517
+
Hg19::chr7:94029524..94029584,+p@chr7:94029524..94029584
+
Hg19::chr7:94030866..94030910,+p@chr7:94030866..94030910
+
Hg19::chr7:94033868..94033880,+p1@S89896
Hg19::chr7:94034000..94034033,+p2@S89896
Hg19::chr7:94034140..94034180,+p@chr7:94034140..94034180
+
Hg19::chr7:94034542..94034562,-p@chr7:94034542..94034562
-
Hg19::chr7:94034974..94035010,+p10@COL1A2
Hg19::chr7:94035554..94035591,+p@chr7:94035554..94035591
+
Hg19::chr7:94035583..94035621,-p@chr7:94035583..94035621
-
Hg19::chr7:94037152..94037181,+p@chr7:94037152..94037181
+
Hg19::chr7:94037521..94037550,-p@chr7:94037521..94037550
-
Hg19::chr7:94037672..94037694,-p@chr7:94037672..94037694
-
Hg19::chr7:94038075..94038115,+p@chr7:94038075..94038115
+
Hg19::chr7:94038630..94038658,+p@chr7:94038630..94038658
+
Hg19::chr7:94038672..94038682,+p@chr7:94038672..94038682
+
Hg19::chr7:94038689..94038708,+p@chr7:94038689..94038708
+
Hg19::chr7:94038862..94038901,+p@chr7:94038862..94038901
+
Hg19::chr7:94039027..94039116,+p@chr7:94039027..94039116
+
Hg19::chr7:94039543..94039584,+p@chr7:94039543..94039584
+
Hg19::chr7:94039588..94039609,-p@chr7:94039588..94039609
-
Hg19::chr7:94039723..94039751,+p@chr7:94039723..94039751
+
Hg19::chr7:94039766..94039808,+p@chr7:94039766..94039808
+
Hg19::chr7:94039767..94039815,-p@chr7:94039767..94039815
-
Hg19::chr7:94040191..94040227,+p@chr7:94040191..94040227
+
Hg19::chr7:94040358..94040405,+p@chr7:94040358..94040405
+
Hg19::chr7:94040407..94040428,+p@chr7:94040407..94040428
+
Hg19::chr7:94041375..94041406,+p@chr7:94041375..94041406
+
Hg19::chr7:94041890..94041936,+p@chr7:94041890..94041936
+
Hg19::chr7:94042387..94042425,+p@chr7:94042387..94042425
+
Hg19::chr7:94043225..94043260,-p@chr7:94043225..94043260
-
Hg19::chr7:94043566..94043591,-p@chr7:94043566..94043591
-
Hg19::chr7:94044531..94044560,+p@chr7:94044531..94044560
+
Hg19::chr7:94045713..94045725,+p@chr7:94045713..94045725
+
Hg19::chr7:94045732..94045787,+p@chr7:94045732..94045787
+
Hg19::chr7:94045765..94045794,-p@chr7:94045765..94045794
-
Hg19::chr7:94047076..94047090,+p29@COL1A2
Hg19::chr7:94047099..94047117,+p7@COL1A2
Hg19::chr7:94047123..94047152,-p@chr7:94047123..94047152
-
Hg19::chr7:94047804..94047838,+p13@COL1A2
Hg19::chr7:94047835..94047866,-p@chr7:94047835..94047866
-
Hg19::chr7:94048800..94048838,+p14@COL1A2
Hg19::chr7:94049540..94049566,+p@chr7:94049540..94049566
+
Hg19::chr7:94049702..94049727,+p@chr7:94049702..94049727
+
Hg19::chr7:94049849..94049884,+p@chr7:94049849..94049884
+
Hg19::chr7:94049879..94049929,-p@chr7:94049879..94049929
-
Hg19::chr7:94049890..94049910,+p@chr7:94049890..94049910
+
Hg19::chr7:94049917..94049930,+p@chr7:94049917..94049930
+
Hg19::chr7:94050316..94050344,+p@chr7:94050316..94050344
+
Hg19::chr7:94051197..94051238,+p@chr7:94051197..94051238
+
Hg19::chr7:94052296..94052403,+p@chr7:94052296..94052403
+
Hg19::chr7:94053635..94053729,+p4@COL1A2
Hg19::chr7:94054463..94054512,+p12@COL1A2
Hg19::chr7:94055058..94055131,+p5@COL1A2
Hg19::chr7:94055725..94055751,+p11@COL1A2
Hg19::chr7:94055753..94055769,+p26@COL1A2
Hg19::chr7:94055760..94055795,-p@chr7:94055760..94055795
-
Hg19::chr7:94055770..94055813,+p3@COL1A2
Hg19::chr7:94056489..94056511,+p16@COL1A2
Hg19::chr7:94056523..94056567,+p8@COL1A2
Hg19::chr7:94056562..94056600,-p@chr7:94056562..94056600
-
Hg19::chr7:94056568..94056582,+p28@COL1A2
Hg19::chr7:94056938..94056972,+p6@COL1A2
Hg19::chr7:94056974..94057093,+p2@COL1A2
Hg19::chr7:94057105..94057127,+p9@COL1A2
Hg19::chr7:94057128..94057140,+p@chr7:94057128..94057140
+
Hg19::chr7:94057156..94057168,+p@chr7:94057156..94057168
+
Hg19::chr7:94057594..94057612,+p@chr7:94057594..94057612
+
Hg19::chr7:94057614..94057624,+p@chr7:94057614..94057624
+
Hg19::chr7:94057638..94057652,+p@chr7:94057638..94057652
+
Hg19::chr7:94057671..94057702,+p@chr7:94057671..94057702
+
Hg19::chr7:94057696..94057707,-p@chr7:94057696..94057707
-
Hg19::chr7:94057725..94057751,-p@chr7:94057725..94057751
-
Hg19::chr7:94057728..94057755,+p@chr7:94057728..94057755
+
Hg19::chr7:94057757..94057768,+p@chr7:94057757..94057768
+
Hg19::chr7:94058514..94058548,+p@chr7:94058514..94058548
+
Hg19::chr7:94058520..94058567,-p@chr7:94058520..94058567
-
Hg19::chr7:94058557..94058584,+p@chr7:94058557..94058584
+
Hg19::chr7:94058570..94058617,-p@chr7:94058570..94058617
-
Hg19::chr7:94058618..94058650,-p@chr7:94058618..94058650
-
Hg19::chr7:94058648..94058661,+p@chr7:94058648..94058661
+
Hg19::chr7:94058664..94058689,+p@chr7:94058664..94058689
+
Hg19::chr7:94058692..94058714,+p@chr7:94058692..94058714
+
Hg19::chr7:94059570..94059584,+p2@K02046
Hg19::chr7:94059589..94059687,+p1@K02046
Hg19::chr7:94059670..94059691,-p@chr7:94059670..94059691
-
Hg19::chr7:94059776..94059797,+p@chr7:94059776..94059797
+
Hg19::chr7:94059804..94059817,+p@chr7:94059804..94059817
+
Hg19::chr7:94059831..94059847,+p@chr7:94059831..94059847
+
Hg19::chr7:94060008..94060022,-p@chr7:94060008..94060022
-
Hg19::chr7:94060074..94060086,+p@chr7:94060074..94060086
+
Hg19::chr7:94060122..94060134,+p@chr7:94060122..94060134
+
Hg19::chr7:94060151..94060162,+p@chr7:94060151..94060162
+
Hg19::chr7:94060182..94060195,+p@chr7:94060182..94060195
+
Hg19::chr9:131186466..131186485,+p7@CERCAM


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0004816948920223530.0304912866650152200Focal adhesion (KEGG):04510
8.71154780629587e-050.00919068293564215285ECM-receptor interaction (KEGG):04512
7.90849808217909e-050.00919068293564215281Protein digestion and absorption (KEGG):04974
0.0001355976572932310.01072916463332692106Amoebiasis (KEGG):05146
0.0004258482060090.0299513238226332188Focal Adhesion (Wikipathways):WP306
1.13900315595625e-050.00720988997720308231Inflammatory Response Pathway (Wikipathways):WP453
0.0001206632791670510.01072916463332692100Senescence and Autophagy (Wikipathways):WP615
8.71154780629587e-050.00919068293564215285Integrin cell surface interactions (Reactome):REACT_13552
4.21831510575296e-050.009190682935642153466Hemostasis (Reactome):REACT_604
5.08276270087817e-050.00919068293564215265Signaling by PDGF (Reactome):REACT_16888
0.0008428548299855190.04850246430734852265Axon guidance (Reactome):REACT_18266



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005584collagen type I6.44603038489087e-06
GO:0008147structural constituent of bone6.44603038489087e-06
GO:0044420extracellular matrix part2.30314774701338e-05
GO:0005583fibrillar collagen2.9532131139368e-05
GO:0001501skeletal development5.17325564363905e-05
GO:0044421extracellular region part5.17325564363905e-05
GO:0005578proteinaceous extracellular matrix0.000328619286134617
GO:0005581collagen0.00038321432857395
GO:0031214biomineral formation0.000818453034055813
GO:0001503ossification0.000818453034055813
GO:0046849bone remodeling0.000885909097236298
GO:0048771tissue remodeling0.000971847088610543
GO:0005201extracellular matrix structural constituent0.00122918978539034
GO:0050954sensory perception of mechanical stimulus0.00122918978539034
GO:0007605sensory perception of sound0.00122918978539034
GO:0006817phosphate transport0.00135234513845316
GO:0048513organ development0.00258796641079435
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway0.00258796641079435
GO:0015698inorganic anion transport0.00375061241749324
GO:0007167enzyme linked receptor protein signaling pathway0.00465995155994494
GO:0009888tissue development0.00465995155994494
GO:0006820anion transport0.00498425912105211
GO:0048731system development0.00528130714890037
GO:0007159leukocyte adhesion0.00760027328706414
GO:0051591response to cAMP0.00802541607704151
GO:0048856anatomical structure development0.00878098692929916
GO:0031960response to corticosteroid stimulus0.00878098692929916
GO:0009103lipopolysaccharide biosynthetic process0.00911818034281925
GO:0008653lipopolysaccharide metabolic process0.00943204502218036
GO:0009612response to mechanical stimulus0.0103321126366538
GO:0007275multicellular organismal development0.0108246521555363
GO:0005518collagen binding0.0108246521555363
GO:0042542response to hydrogen peroxide0.0110484362287232
GO:0043434response to peptide hormone stimulus0.0117944415559125
GO:0000302response to reactive oxygen species0.0140572863723272
GO:0048545response to steroid hormone stimulus0.0187175629731496
GO:0033692cellular polysaccharide biosynthetic process0.0191166387066115
GO:0000271polysaccharide biosynthetic process0.0191166387066115
GO:0007584response to nutrient0.0191166387066115
GO:0010035response to inorganic substance0.0191166387066115
GO:0007600sensory perception0.0223351177534285
GO:0032502developmental process0.0242096134401782
GO:0031667response to nutrient levels0.0253772630408364
GO:0010033response to organic substance0.0256241731877004
GO:0005788endoplasmic reticulum lumen0.0258599195614814
GO:0009991response to extracellular stimulus0.0260852302672223
GO:0005604basement membrane0.0281819078697815
GO:0009725response to hormone stimulus0.0281819078697815
GO:0008201heparin binding0.0281819078697815
GO:0032501multicellular organismal process0.0296067134600146
GO:0044264cellular polysaccharide metabolic process0.0299128253104611
GO:0005976polysaccharide metabolic process0.0300325558884176
GO:0050877neurological system process0.0302549691748208
GO:0043284biopolymer biosynthetic process0.0334936724509308
GO:0006811ion transport0.0334936724509308
GO:0005539glycosaminoglycan binding0.0356195299440271
GO:0005509calcium ion binding0.0359449920463006
GO:0030247polysaccharide binding0.0359449920463006
GO:0005507copper ion binding0.0359449920463006
GO:0006979response to oxidative stress0.0362458117056837
GO:0001871pattern binding0.0368382240892378
GO:0051179localization0.0368382240892378
GO:0003008system process0.0368382240892378
GO:0005515protein binding0.0376066553049762
GO:0008544epidermis development0.0376066553049762
GO:0016051carbohydrate biosynthetic process0.0378532123607544
GO:0007398ectoderm development0.0394312995832476
GO:0009628response to abiotic stimulus0.0438583468469463



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
dense mesenchyme tissue8.71e-2173
somite1.18e-2071
presomitic mesoderm1.18e-2071
presumptive segmental plate1.18e-2071
dermomyotome1.18e-2071
trunk paraxial mesoderm1.18e-2071
skeletal muscle tissue3.12e-2062
striated muscle tissue3.12e-2062
myotome3.12e-2062
paraxial mesoderm4.74e-2072
presumptive paraxial mesoderm4.74e-2072
muscle tissue1.11e-1964
musculature1.11e-1964
musculature of body1.11e-1964
epithelial vesicle7.38e-1978
multilaminar epithelium1.91e-1683
trunk mesenchyme3.05e-14122
mesenchyme7.08e-14160
entire embryonic mesenchyme7.08e-14160
splanchnic layer of lateral plate mesoderm6.09e-1083
mesoderm1.85e-09315
mesoderm-derived structure1.85e-09315
presumptive mesoderm1.85e-09315
organism subdivision5.56e-09264
adipose tissue8.29e-0914
trunk7.50e-08199
connective tissue9.23e-08371
integument1.03e-0746
integumental system1.03e-0746
unilaminar epithelium1.09e-07148
artery1.73e-0742
arterial blood vessel1.73e-0742
arterial system1.73e-0742
heart3.06e-0724
primitive heart tube3.06e-0724
primary heart field3.06e-0724
anterior lateral plate mesoderm3.06e-0724
heart tube3.06e-0724
heart primordium3.06e-0724
cardiac mesoderm3.06e-0724
cardiogenic plate3.06e-0724
heart rudiment3.06e-0724
surface structure4.36e-0799
vasculature6.98e-0778
vascular system6.98e-0778
systemic artery9.11e-0733
systemic arterial system9.11e-0733
cardiovascular system9.65e-07109


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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