FFCP PHASE1:Hg19::chr3:69788576..69788648,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4286 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7105 | |||
|TSSclassifier=strong | |||
|UniProt=O75030 | |||
|association_with_transcript=0bp_to_ENST00000352241,ENST00000448226,ENST00000461511,ENST00000495741,NM_198159,uc003dnz.2_5end | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_1_at_MITF_5end | |||
|id=chr3:69788576..69788648,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.57e-16!71;CL:0000839!5.92e-16!70;CL:0002194!7.42e-14!63;CL:0000576!7.42e-14!63;CL:0000040!7.42e-14!63;CL:0000559!7.42e-14!63;CL:0002009!2.06e-13!65;CL:0000766!9.53e-13!76;CL:0000763!2.25e-10!112;CL:0000049!2.25e-10!112;CL:0002057!4.09e-10!42;CL:0000860!2.35e-09!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;4.79e-12;39!CL:0000234;4.79e-12;39!CL:0000860;1.45e-10;33!CL:0002057;1.45e-10;33!CL:0000576;1.57e-07;48!CL:0000766;5.44e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.61e-17,67;CL:0000839,6.37e-17,66;CL:0002194,8.88e-15,59;CL:0000576,8.88e-15,59;CL:0000040,8.88e-15,59;CL:0000559,8.88e-15,59;CL:0002009,2.82e-14,61;CL:0000766,1.02e-13,72;CL:0000473,1.87e-13,48;CL:0000234,1.87e-13,48;CL:0000763,3.85e-11,108;CL:0000049,3.85e-11,108;CL:0000860,3.56e-10,42;CL:0002057,3.56e-10,42 | |||
|ontology_enrichment_development_v019=CL:0002057;6.50e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-31!115;UBERON:0000062!5.62e-21!511;UBERON:0002371!8.89e-15!80;UBERON:0001474!1.86e-13!86;UBERON:0000468!1.10e-12!659;UBERON:0004765!1.43e-12!101;UBERON:0001434!1.43e-12!101;UBERON:0000480!1.02e-11!626;UBERON:0000467!1.09e-11!625;UBERON:0002390!1.16e-11!102;UBERON:0003061!1.16e-11!102;UBERON:0002050!1.59e-11!605;UBERON:0005423!1.59e-11!605;UBERON:0000923!3.51e-11!604;UBERON:0005291!3.51e-11!604;UBERON:0006598!3.51e-11!604;UBERON:0002532!3.51e-11!604;UBERON:0000922!5.09e-11!612;UBERON:0002193!4.06e-10!112;UBERON:0001049!1.08e-09!57;UBERON:0005068!1.08e-09!57;UBERON:0006241!1.08e-09!57;UBERON:0007135!1.08e-09!57;UBERON:0002405!1.22e-08!115;UBERON:0000955!3.72e-08!69;UBERON:0006238!3.72e-08!69;UBERON:0003080!6.53e-08!42;UBERON:0002616!9.22e-08!59;UBERON:0001017!1.55e-07!82;UBERON:0002780!1.95e-07!41;UBERON:0001890!1.95e-07!41;UBERON:0006240!1.95e-07!41;UBERON:0005743!5.48e-07!86;UBERON:0002204!6.93e-07!167;UBERON:0003075!7.58e-07!86;UBERON:0007284!7.58e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.93e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.41e-31,114;UBERON:0002371,1.90e-15,76;UBERON:0001474,5.15e-14,82;UBERON:0004765,1.15e-12,90;UBERON:0001434,1.19e-12,100;UBERON:0002390,3.64e-12,98;UBERON:0003061,3.64e-12,98;UBERON:0002405,1.62e-11,93;UBERON:0002193,1.62e-10,108;UBERON:0000922,2.00e-09,592;UBERON:0005423,2.44e-09,581;UBERON:0001049,5.24e-09,56;UBERON:0005068,5.24e-09,56;UBERON:0006241,5.24e-09,56;UBERON:0007135,5.24e-09,56;UBERON:0002050,1.66e-08,564;UBERON:0000923,2.83e-08,560;UBERON:0010316,2.83e-08,560;UBERON:0005291,2.83e-08,560;UBERON:0006598,2.83e-08,560;UBERON:0010317,2.83e-08,560;UBERON:0002532,2.83e-08,560;UBERON:0000073,7.69e-08,53;UBERON:0002616,7.69e-08,53;UBERON:0000955,1.50e-07,68;UBERON:0006238,1.50e-07,68;UBERON:0002780,2.30e-07,41;UBERON:0001890,2.30e-07,41;UBERON:0003080,2.30e-07,41;UBERON:0006240,2.30e-07,41;UBERON:0001017,5.57e-07,81;UBERON:0002204,9.01e-07,167 | |||
|phase1_expression=18.8945514441379,23.5510576280081,14.3773492177891,16.0117277365009,21.0071714380825,12.2127393374052,5.06599756336621,5.68547886084148,14.8875808073908,0.491467873003018,0.697801167972428,0.436882744260345,0.263766978228454,2.10402800032079,4.30816588446291,2.6893005858071,1.20538905604795,0,0.487932798790507,1.47745269692145,0.408001382488506,0.940364164434263,1.43117993565528,2.46373965131192,1.63205431473244,0.687720651731561,0.985207073399349,1.02324015707783,3.93364276848904,2.68680578668049,10.217864138861,0,0.90361775633475,0.369754010166788,0,0,1.17440175733939,8.86392653651004,12.8348446380891,8.46342395791822,63.5919946841385,84.5362468309537,85.2575128869157,6.25212426752128,11.7141542543531,8.24785808038575,35.7940716834754,59.6193437631647,83.9304265125731,18.9876978932619,11.7833925003386,16.3172738623124,32.7508396699788,32.2742341791913,24.3767675869815,14.4946601447806,18.0118059038178,25.8432007111847,15.9163624032869,14.4418062184242,10.2293940127847,10.5552416059749,8.37747362010854,7.6720455095885,18.2831820336008,20.9932533135722,16.8162007228805,33.6673211444036,17.2089363078666,23.2392063834475,22.3997815974346,19.8869923433285,15.8231193720442,4.64761629886272,3.18906449947565,4.82214884669265,9.0986191228661,9.6113211418564,18.4834424701642,2.28010194992999,3.38158351238453,3.83594722905731,0,1.63841583378639,0,0.426730222566507,0,0,0,0,0,0,0,0,2.80254281490768,1.58030450865046,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.76791966692651,0,0.710331756132051,0,0,0,0,0,2.68280343881454,0.895037932904712,8.67453965722959,8.52274448081012,11.2980284789442,3.9764297352555,5.83961844363163,5.2939497611878,4.87804674417641,5.18225235589444,25.6064092598028,0.728590576585084,0.370784442784429,45.4366351116557,50.4976238167875,55.3105115758479,3.57735936458013,1.71598473234038,4.45749001595478,1.39133685156694,0,0.694281003215189,2.26123176769604,1.67799774483962,1.37559020970034,1.04497483268405,2.32575083252396,3.20189636418039,1.67360306382335,1.20848795132744,2.28081631715554,1.95249646038536,4.04429388380456,0,2.67899184852239,3.59246996201872,3.60356737546631,1.53316637465883,0,3.66403487860815,0,0,0.436094052142534,7.45457927542978,1.13967460498122,3.04541115870403,0.573673241497627,2.12801029319014,3.36406560085384,2.1349799145941,0.74000264525148,3.7345324247972,0.67355336034844,1.14423332179421,2.57307626996383,2.88087962239999,2.81185718200556,2.80944069147288,0,2.09228152772521,3.40560046066918,3.39933183173076,3.23036855415172,5.71631679513701,1.84251475967652,8.78269139994006,8.31602000097437,4.94533858557114,2.73048408581408,2.15585442544872,2.02003336744879,2.87772595705518,10.8055005038831,5.26773145057006,2.75839016219118,7.81237906314303,0.340296549480063,3.22901344239952,4.05759038755278,3.17897851739343,0.300091096084402,0.92747276314595,2.83404594050192,4.09457083929498,0.168776332241266,0.974370051611986,1.26216887122057,1.28869858099219,12.931684545505,0.710019185033229,1.20902517873168,7.12154487704048,2.51239109112286,3.81844568827169,4.87567812161307,0.609868530647977,0.397589304964456,1.39432731443422,1.86589899027667,1.00928340350251,0,1.56449532329816,9.00537313470039,4.14404764057442,14.3954057689914,7.94067429836544,8.16316920274923,7.08055698328027,3.85617647813571,5.4044046638873,4.57546832594053,4.98268300133303,4.31460186112526,5.69042248863504,3.07797725557112,1.4763109092493,1.40241773803446,2.057870056657,0,3.80265104465493,2.94848165003288,3.54473944008842,0,2.33678033231916,2.57351715447788,2.96325770603289,0,1.91005047582099,1.20364978706088,0.977424915930974,2.07986957055916,4.3299402607582,5.10093781890338,5.28339124061197,1.73239737313289,2.31492756288305,2.66355813128438,3.95102198979638,0.858486162094873,65.7399406253351,114.194081387948,72.9779006837656,4.68669169933885,5.20744597416465,1.55952606966625,3.85101647622248,1.16253575405585,1.91691339582606,461.132790670603,68.2375363602502,264.343347314484,199.029655668824,227.867592334616,22.160765107967,21.0093634057053,5.86087236050235,10.2643467613623,12.1336441389922,9.01029173531752,30.5834282914719,3.47606361470618,3.48768055066624,2.71351657537515,1.68053230485111,39.3422090437071,0,12.233153362904,17.6812642749322,0.771622122786426,0,0.532844358032199,4.43231780340257,3.7983512377401,1.64648067356154,0.325736184293735,2.84313558994037,0.791951872933429,4.22015127883421,2.61460037580088,4.1988656296464,59.5956525141833,61.2753651547194,73.7918788190611,3.11512312139057,3.44585807502342,8.5582143024431,3.18518874668674,6.36976599906189,7.87868238255541,0,0.394061520403854,0,0.641715181398742,3.04913549066956,5.20559415430487,0,0.670065061337395,1.91381625495949,0,0,2.07207756718018,12.269149171914,2.50085260529839,1.89885516589815,11.2304265226636,8.3861624734666,15.2971342582917,15.3455253640454,6.01892199455438,4.5481500811197,6.2083842775503,1.32845119707087,1.47495334833363,8.16705975999979,1.37060810223918,2.40200396667599,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| |||
|short_description=p1@MITF | |||
}} |
Revision as of 19:43, 21 January 2014
Short description: | p1@MITF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MITF_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | 0bp_to_ENST00000352241, ENST00000448226, ENST00000461511, ENST00000495741, NM_198159, uc003dnz.2_5end |
EntrezGene: | MITF |
HGNC: | 7105 |
UniProt: | O75030 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.61e-17 | 67 |
myeloid lineage restricted progenitor cell | 6.37e-17 | 66 |
monopoietic cell | 8.88e-15 | 59 |
monocyte | 8.88e-15 | 59 |
monoblast | 8.88e-15 | 59 |
promonocyte | 8.88e-15 | 59 |
macrophage dendritic cell progenitor | 2.82e-14 | 61 |
myeloid leukocyte | 1.02e-13 | 72 |
defensive cell | 1.87e-13 | 48 |
phagocyte | 1.87e-13 | 48 |
myeloid cell | 3.85e-11 | 108 |
common myeloid progenitor | 3.85e-11 | 108 |
classical monocyte | 3.56e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.56e-10 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.41e-31 | 114 |
bone marrow | 1.90e-15 | 76 |
bone element | 5.15e-14 | 82 |
skeletal element | 1.15e-12 | 90 |
skeletal system | 1.19e-12 | 100 |
hematopoietic system | 3.64e-12 | 98 |
blood island | 3.64e-12 | 98 |
immune system | 1.62e-11 | 93 |
hemolymphoid system | 1.62e-10 | 108 |
embryo | 2.00e-09 | 592 |
developing anatomical structure | 2.44e-09 | 581 |
neural tube | 5.24e-09 | 56 |
neural rod | 5.24e-09 | 56 |
future spinal cord | 5.24e-09 | 56 |
neural keel | 5.24e-09 | 56 |
embryonic structure | 1.66e-08 | 564 |
germ layer | 2.83e-08 | 560 |
germ layer / neural crest | 2.83e-08 | 560 |
embryonic tissue | 2.83e-08 | 560 |
presumptive structure | 2.83e-08 | 560 |
germ layer / neural crest derived structure | 2.83e-08 | 560 |
epiblast (generic) | 2.83e-08 | 560 |
regional part of nervous system | 7.69e-08 | 53 |
regional part of brain | 7.69e-08 | 53 |
brain | 1.50e-07 | 68 |
future brain | 1.50e-07 | 68 |
regional part of forebrain | 2.30e-07 | 41 |
forebrain | 2.30e-07 | 41 |
anterior neural tube | 2.30e-07 | 41 |
future forebrain | 2.30e-07 | 41 |
central nervous system | 5.57e-07 | 81 |
musculoskeletal system | 9.01e-07 | 167 |