FFCP PHASE1:Mm9::chr3:89263198..89263211,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=68603|HGNC=|MCL_coexpression_id=87|UniProt=D3YXP6|association_with_transcript=-41bp_to_ENSMUST00000107410_5end|description=CAGE_peak_5_at_Pmvk_5end|id=chr3:89263198..89263211,+|ontology_enrichment_celltype=CL:0000117!2.50e-12!23;CL:0000337!2.50e-12!23;CL:0000540!2.33e-09!33;CL:0000047!2.33e-09!33;CL:0000031!2.33e-09!33;CL:0000404!2.33e-09!33;CL:0000221!1.51e-08!44;CL:0000133!1.51e-08!44;CL:0002319!2.56e-08!43|ontology_enrichment_celltype_v019_2=CL:0000117,8.38e-29,23;CL:0000337,8.38e-29,23;CL:0000540,2.47e-18,33;CL:0000047,2.47e-18,33;CL:0000031,2.47e-18,33;CL:0000404,2.47e-18,33;CL:0002319,6.13e-16,43;CL:0000221,1.94e-15,44;CL:0000133,1.94e-15,44;CL:0000393,1.18e-14,39;CL:0000211,1.18e-14,39;CL:0002321,1.27e-10,70;CL:0000723,1.62e-07,91;CL:0000048,1.62e-07,91;CL:0002613,4.08e-07,3;CL:0002609,4.16e-07,6;CL:0000120,9.33e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.02e-15!73;UBERON:0005743!2.02e-15!73;UBERON:0001049!8.16e-15!52;UBERON:0005068!8.16e-15!52;UBERON:0006241!8.16e-15!52;UBERON:0007135!8.16e-15!52;UBERON:0000073!8.55e-15!75;UBERON:0001016!8.55e-15!75;UBERON:0004121!3.16e-14!102;UBERON:0000924!3.16e-14!102;UBERON:0006601!3.16e-14!102;UBERON:0002020!9.32e-14!34;UBERON:0002346!4.60e-13!71;UBERON:0003075!4.60e-13!71;UBERON:0007284!4.60e-13!71;UBERON:0000955!7.61e-13!50;UBERON:0006238!7.61e-13!50;UBERON:0002616!2.60e-12!49;UBERON:0003080!3.37e-12!40;UBERON:0002780!7.72e-12!39;UBERON:0001890!7.72e-12!39;UBERON:0006240!7.72e-12!39;UBERON:0000033!2.38e-11!63;UBERON:0003056!7.50e-11!49;UBERON:0002791!1.63e-10!29;UBERON:0003528!1.63e-10!29;UBERON:0001893!1.63e-10!29;UBERON:0000956!1.25e-07!21;UBERON:0001869!1.25e-07!21;UBERON:0000203!1.25e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.23e-25,34;UBERON:0001017,8.85e-21,73;UBERON:0001016,5.51e-20,75;UBERON:0000073,2.67e-19,54;UBERON:0003528,9.23e-18,29;UBERON:0002791,9.23e-18,29;UBERON:0001893,9.23e-18,29;UBERON:0001049,3.55e-17,52;UBERON:0005068,3.55e-17,52;UBERON:0006241,3.55e-17,52;UBERON:0007135,3.55e-17,52;UBERON:0004121,4.76e-15,95;UBERON:0000924,4.76e-15,95;UBERON:0006601,4.76e-15,95;UBERON:0002780,1.04e-14,39;UBERON:0001890,1.04e-14,39;UBERON:0006240,1.04e-14,39;UBERON:0003080,3.34e-14,40;UBERON:0002346,1.18e-12,64;UBERON:0003075,1.18e-12,64;UBERON:0007284,1.18e-12,64;UBERON:0000955,1.22e-12,47;UBERON:0006238,1.22e-12,47;UBERON:0002616,1.22e-11,46;UBERON:0010371,2.47e-11,73;UBERON:0000956,5.85e-11,21;UBERON:0001869,5.85e-11,21;UBERON:0000203,5.85e-11,21;UBERON:0003056,1.34e-10,49;UBERON:0001948,2.10e-10,5;UBERON:0002315,2.10e-10,5;UBERON:0002240,1.45e-08,6;UBERON:0005174,1.45e-08,6;UBERON:0001137,1.45e-08,6;UBERON:0002619,1.63e-08,17;UBERON:0002420,2.19e-08,8;UBERON:0007245,2.19e-08,8;UBERON:0010009,2.19e-08,8;UBERON:0010011,2.19e-08,8;UBERON:0000454,2.19e-08,8;UBERON:0002021,1.14e-07,10;UBERON:0000411,1.14e-07,10;UBERON:0001950,1.14e-07,10;UBERON:0000025,1.58e-07,114;UBERON:0000369,6.70e-07,5;UBERON:0002435,6.70e-07,5;UBERON:0000204,6.70e-07,5;UBERON:0010082,6.70e-07,5;UBERON:0010314,8.06e-07,92|phase1_expression=0.640595388419176,0.348975407639361,0.909998478779072,0.60492842261366,0,0.671517087647559,0.700837921786577,0.129123323441576,0,0,0,0.159544317990673,0,0,0.333109761815663,0.202475267389826,0,0,0,0,0.0850432901510698,0.496454756004426,1.30599894569468,0.799962113967033,0.45881856213434,0,0.430761996159075,0.215471232685889,0.760093677825496,0,0.665191531965914,1.27006134691926,0.61506478758457,0,0,0.166234645358492,0,0,0.7813353445238,0,0,0,0,0,0,0.367093504323363,0.782391344348039,0.872100625521786,0.219686182734472,0.194429899074283,1.81982348112971,1.43752564364972,0,0,0,0,0,0,2.02316460859598,3.1739458756322,5.07065122804943,3.38844532069132,1.77858959222228,0,0,0,0,0,0.414758449233911,1.21505344498522,1.26194976810829,3.71346279724945,3.75476519617743,1.34739879136449,2.20444583341944,1.83843757322004,0,1.27687338085188,1.22885226604995,3.69281605644543,3.65950574409639,5.2091337055676,1.11673199600552,3.37657566019008,0.763991238884051,3.53554302568401,2.27794689278565,3.35519002485541,0.075726193333184,0.226714680320357,0.289864488701678,0.860423876981386,4.0798280022465,2.15881276655127,0,0,0,0.852151612890289,0.519572009205738,0.35333957451034,0.704217098883403,0,0,0,1.29894624606728,0.506719730950197,0.505524445014783,0.22836775943812,0,0,0.520455980298408,0.913396434936424,0.461230994512117,0.452167921657868,0.23517741427141,0.251333182659351,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0.255457055208591,0,0,0.127070227073065,0.898743836428936,0,2.01046963380583,1.04294592115366,0.511430914660661,0.83115217823824,0.973447578406546,0,0,0.758168275301024,0.210441855886474,0.390361328888111,0.689706313300419,0.360124259610698,0.150704817835715,0.136072998302656,0.640568601424249,0.281105173679186,0.258703370739016,0,1.13463648100692,0.351902248327898,0.219195732427575,0.834141747676794,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0,0,0.154267112887378,0,0,0.233530684734339,0,0,0,0,0.219550115291051,0,0.210289948564127,0.823236899034275,0,0.264450566663544,0.639864751605702,0.232236671860439,0.644337306610467,0.403367049246685,0.444756087689741,0.570676878337677,0.949058123089023,0.494096864172033,0,0.596869416123452,0.19496408711912,0,0,0,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0,0.140271639780637,0,0,0.31399745568275,0.246794327843601,0.296452627087149,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,0.241177159752417,0.50925170356284,1.72617682470486,0,0,0,0,0.312037673114561,1.01031551178845,1.07638448113147,0.482443521363367,0.369506380333209,0.568474235311454,0.325929952884052,0,0.234690248288502,0.167506257441816,0,0.975668239288994,0.157635144106191,0,0.159454768657487,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0.491764273019036,0,0.642202359951168,0.703270119553219,0.819674726883377,0,0.631016438832513,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0,0.404810701674894,0,0.395287777946524,1.60660658210904,0.141940085208269,0.534196811001766,0.325773918707152,0,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0,0,0,0,0,0.340439605753788,0.720244376125241,0.646793418913773,1.07168517515796,0.177340233642274,1.07021290561242,0.658196082408484,0.304464949114599,0,0.21183207086382,0,1.48397627647332,0.968786560175433,0.904693873922338,0.954978752025092,0.492422699235184,0,0.18542530201051,0,0,0.185194527369712,0.753473828018764,0,0,0.169978429993855,0.279902904647316,0.138199973804424,0,0.632671987162271,0.813277868507395,0.648032044930808,0.209088296014469,0.87345025498471,0.269728692769641,0.41326727862668,0,0.388844919875379,0,0,0.149516546043979,0.66183396182839,1.16670713006429,0.904118764344118,0.675824501963113,0.352071715937262,0,0.104859344425711,0,0.288030006257865,0.316011120628178,0,0.616265742988964,0.25984164595559,0,0.198681354781265,0,0.295379054349154,0.201932899896295,0.15241361331,0.201652370273681,0,0.0962118416403295,0,0.226730383615211,0.665957860122194,0.269141569828427,0.503653849092235,0,0,0,0,0,1.12950368523413,0.920650473014354,1.71868654031819,2.40594455281163,3.42541259885321,0.755393897389701,0.675022500231806,1.35096360967266,1.35942722695261,1.03552062350364,0.518936737920883,0.798049746802062,0.853668028770671,0.729320151204882,1.04806581313991,1.65459157605013,0,0.618105171716683,0.64183841918363,0.505394423527595,0,0.377252682772152,0.655490552289177,0.832326981263301,0.34461281373368,1.42888107384922,0.695305955669133,0.964546102318525,1.23625770240992,0.441596760403192,1.02860775715625,0,0.715308569841963,0.290692833264657,0.564656282491984,0.507687647350059,0.365855945745545,0.789209134313529,0.679020569229309,0.561142271657738,0.830445126869219,0.394017929502254,0.818462086339379,0.309873682371932,0.578719832943424,0.999242311751784,0.233931608445408,0.429742108096597,0.57386499620653,0.661774257358546,0.231867835620421|short_description=p5@Pmvk}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68603 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YXP6 | |||
|association_with_transcript=-41bp_to_ENSMUST00000107410_5end | |||
|cluster_id=chr3:89263198..89263211,+ | |||
|description=CAGE_peak_5_at_Pmvk_5end | |||
|id=chr3:89263198..89263211,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.50e-12!23;CL:0000337!2.50e-12!23;CL:0000540!2.33e-09!33;CL:0000047!2.33e-09!33;CL:0000031!2.33e-09!33;CL:0000404!2.33e-09!33;CL:0000221!1.51e-08!44;CL:0000133!1.51e-08!44;CL:0002319!2.56e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.38e-29,23;CL:0000337,8.38e-29,23;CL:0000540,2.47e-18,33;CL:0000047,2.47e-18,33;CL:0000031,2.47e-18,33;CL:0000404,2.47e-18,33;CL:0002319,6.13e-16,43;CL:0000221,1.94e-15,44;CL:0000133,1.94e-15,44;CL:0000393,1.18e-14,39;CL:0000211,1.18e-14,39;CL:0002321,1.27e-10,70;CL:0000723,1.62e-07,91;CL:0000048,1.62e-07,91;CL:0002613,4.08e-07,3;CL:0002609,4.16e-07,6;CL:0000120,9.33e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.02e-15!73;UBERON:0005743!2.02e-15!73;UBERON:0001049!8.16e-15!52;UBERON:0005068!8.16e-15!52;UBERON:0006241!8.16e-15!52;UBERON:0007135!8.16e-15!52;UBERON:0000073!8.55e-15!75;UBERON:0001016!8.55e-15!75;UBERON:0004121!3.16e-14!102;UBERON:0000924!3.16e-14!102;UBERON:0006601!3.16e-14!102;UBERON:0002020!9.32e-14!34;UBERON:0002346!4.60e-13!71;UBERON:0003075!4.60e-13!71;UBERON:0007284!4.60e-13!71;UBERON:0000955!7.61e-13!50;UBERON:0006238!7.61e-13!50;UBERON:0002616!2.60e-12!49;UBERON:0003080!3.37e-12!40;UBERON:0002780!7.72e-12!39;UBERON:0001890!7.72e-12!39;UBERON:0006240!7.72e-12!39;UBERON:0000033!2.38e-11!63;UBERON:0003056!7.50e-11!49;UBERON:0002791!1.63e-10!29;UBERON:0003528!1.63e-10!29;UBERON:0001893!1.63e-10!29;UBERON:0000956!1.25e-07!21;UBERON:0001869!1.25e-07!21;UBERON:0000203!1.25e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.23e-25,34;UBERON:0001017,8.85e-21,73;UBERON:0001016,5.51e-20,75;UBERON:0000073,2.67e-19,54;UBERON:0003528,9.23e-18,29;UBERON:0002791,9.23e-18,29;UBERON:0001893,9.23e-18,29;UBERON:0001049,3.55e-17,52;UBERON:0005068,3.55e-17,52;UBERON:0006241,3.55e-17,52;UBERON:0007135,3.55e-17,52;UBERON:0004121,4.76e-15,95;UBERON:0000924,4.76e-15,95;UBERON:0006601,4.76e-15,95;UBERON:0002780,1.04e-14,39;UBERON:0001890,1.04e-14,39;UBERON:0006240,1.04e-14,39;UBERON:0003080,3.34e-14,40;UBERON:0002346,1.18e-12,64;UBERON:0003075,1.18e-12,64;UBERON:0007284,1.18e-12,64;UBERON:0000955,1.22e-12,47;UBERON:0006238,1.22e-12,47;UBERON:0002616,1.22e-11,46;UBERON:0010371,2.47e-11,73;UBERON:0000956,5.85e-11,21;UBERON:0001869,5.85e-11,21;UBERON:0000203,5.85e-11,21;UBERON:0003056,1.34e-10,49;UBERON:0001948,2.10e-10,5;UBERON:0002315,2.10e-10,5;UBERON:0002240,1.45e-08,6;UBERON:0005174,1.45e-08,6;UBERON:0001137,1.45e-08,6;UBERON:0002619,1.63e-08,17;UBERON:0002420,2.19e-08,8;UBERON:0007245,2.19e-08,8;UBERON:0010009,2.19e-08,8;UBERON:0010011,2.19e-08,8;UBERON:0000454,2.19e-08,8;UBERON:0002021,1.14e-07,10;UBERON:0000411,1.14e-07,10;UBERON:0001950,1.14e-07,10;UBERON:0000025,1.58e-07,114;UBERON:0000369,6.70e-07,5;UBERON:0002435,6.70e-07,5;UBERON:0000204,6.70e-07,5;UBERON:0010082,6.70e-07,5;UBERON:0010314,8.06e-07,92 | |||
|phase1_expression=0.640595388419176,0.348975407639361,0.909998478779072,0.60492842261366,0,0.671517087647559,0.700837921786577,0.129123323441576,0,0,0,0.159544317990673,0,0,0.333109761815663,0.202475267389826,0,0,0,0,0.0850432901510698,0.496454756004426,1.30599894569468,0.799962113967033,0.45881856213434,0,0.430761996159075,0.215471232685889,0.760093677825496,0,0.665191531965914,1.27006134691926,0.61506478758457,0,0,0.166234645358492,0,0,0.7813353445238,0,0,0,0,0,0,0.367093504323363,0.782391344348039,0.872100625521786,0.219686182734472,0.194429899074283,1.81982348112971,1.43752564364972,0,0,0,0,0,0,2.02316460859598,3.1739458756322,5.07065122804943,3.38844532069132,1.77858959222228,0,0,0,0,0,0.414758449233911,1.21505344498522,1.26194976810829,3.71346279724945,3.75476519617743,1.34739879136449,2.20444583341944,1.83843757322004,0,1.27687338085188,1.22885226604995,3.69281605644543,3.65950574409639,5.2091337055676,1.11673199600552,3.37657566019008,0.763991238884051,3.53554302568401,2.27794689278565,3.35519002485541,0.075726193333184,0.226714680320357,0.289864488701678,0.860423876981386,4.0798280022465,2.15881276655127,0,0,0,0.852151612890289,0.519572009205738,0.35333957451034,0.704217098883403,0,0,0,1.29894624606728,0.506719730950197,0.505524445014783,0.22836775943812,0,0,0.520455980298408,0.913396434936424,0.461230994512117,0.452167921657868,0.23517741427141,0.251333182659351,0,0,0,0.161766849947409,0,0,0,0,0.209446706813455,0.255457055208591,0,0,0.127070227073065,0.898743836428936,0,2.01046963380583,1.04294592115366,0.511430914660661,0.83115217823824,0.973447578406546,0,0,0.758168275301024,0.210441855886474,0.390361328888111,0.689706313300419,0.360124259610698,0.150704817835715,0.136072998302656,0.640568601424249,0.281105173679186,0.258703370739016,0,1.13463648100692,0.351902248327898,0.219195732427575,0.834141747676794,0,0.205782136407943,0.199034266818493,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0,0,0.154267112887378,0,0,0.233530684734339,0,0,0,0,0.219550115291051,0,0.210289948564127,0.823236899034275,0,0.264450566663544,0.639864751605702,0.232236671860439,0.644337306610467,0.403367049246685,0.444756087689741,0.570676878337677,0.949058123089023,0.494096864172033,0,0.596869416123452,0.19496408711912,0,0,0,0.379335801906163,0.114248512609729,1.1270773567308,0.203651327845314,0,0.140271639780637,0,0,0.31399745568275,0.246794327843601,0.296452627087149,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,0.241177159752417,0.50925170356284,1.72617682470486,0,0,0,0,0.312037673114561,1.01031551178845,1.07638448113147,0.482443521363367,0.369506380333209,0.568474235311454,0.325929952884052,0,0.234690248288502,0.167506257441816,0,0.975668239288994,0.157635144106191,0,0.159454768657487,0.163863314715738,0.345369963731791,0.289298117163023,0,0,0.491764273019036,0,0.642202359951168,0.703270119553219,0.819674726883377,0,0.631016438832513,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0,0.404810701674894,0,0.395287777946524,1.60660658210904,0.141940085208269,0.534196811001766,0.325773918707152,0,0,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0,0,0,0,0,0,0.340439605753788,0.720244376125241,0.646793418913773,1.07168517515796,0.177340233642274,1.07021290561242,0.658196082408484,0.304464949114599,0,0.21183207086382,0,1.48397627647332,0.968786560175433,0.904693873922338,0.954978752025092,0.492422699235184,0,0.18542530201051,0,0,0.185194527369712,0.753473828018764,0,0,0.169978429993855,0.279902904647316,0.138199973804424,0,0.632671987162271,0.813277868507395,0.648032044930808,0.209088296014469,0.87345025498471,0.269728692769641,0.41326727862668,0,0.388844919875379,0,0,0.149516546043979,0.66183396182839,1.16670713006429,0.904118764344118,0.675824501963113,0.352071715937262,0,0.104859344425711,0,0.288030006257865,0.316011120628178,0,0.616265742988964,0.25984164595559,0,0.198681354781265,0,0.295379054349154,0.201932899896295,0.15241361331,0.201652370273681,0,0.0962118416403295,0,0.226730383615211,0.665957860122194,0.269141569828427,0.503653849092235,0,0,0,0,0,1.12950368523413,0.920650473014354,1.71868654031819,2.40594455281163,3.42541259885321,0.755393897389701,0.675022500231806,1.35096360967266,1.35942722695261,1.03552062350364,0.518936737920883,0.798049746802062,0.853668028770671,0.729320151204882,1.04806581313991,1.65459157605013,0,0.618105171716683,0.64183841918363,0.505394423527595,0,0.377252682772152,0.655490552289177,0.832326981263301,0.34461281373368,1.42888107384922,0.695305955669133,0.964546102318525,1.23625770240992,0.441596760403192,1.02860775715625,0,0.715308569841963,0.290692833264657,0.564656282491984,0.507687647350059,0.365855945745545,0.789209134313529,0.679020569229309,0.561142271657738,0.830445126869219,0.394017929502254,0.818462086339379,0.309873682371932,0.578719832943424,0.999242311751784,0.233931608445408,0.429742108096597,0.57386499620653,0.661774257358546,0.231867835620421 | |||
|short_description=p5@Pmvk | |||
}} |
Revision as of 05:08, 4 August 2015
Short description: | p5@Pmvk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Pmvk_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -41bp_to_ENSMUST00000107410_5end |
EntrezGene: | 68603 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.38e-29 | 23 |
neuroblast (sensu Vertebrata) | 8.38e-29 | 23 |
neuron | 2.47e-18 | 33 |
neuronal stem cell | 2.47e-18 | 33 |
neuroblast | 2.47e-18 | 33 |
electrically signaling cell | 2.47e-18 | 33 |
neural cell | 6.13e-16 | 43 |
ectodermal cell | 1.94e-15 | 44 |
neurectodermal cell | 1.94e-15 | 44 |
electrically responsive cell | 1.18e-14 | 39 |
electrically active cell | 1.18e-14 | 39 |
embryonic cell | 1.27e-10 | 70 |
somatic stem cell | 1.62e-07 | 91 |
multi fate stem cell | 1.62e-07 | 91 |
striatum neuron | 4.08e-07 | 3 |
neuron of cerebral cortex | 4.16e-07 | 6 |
granule cell | 9.33e-07 | 3 |