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MCL coexpression mm9:816

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Phase1 CAGE Peaks

 Short description
Mm9::chr13:14614073..14614085,-p@chr13:14614073..14614085
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Mm9::chr18:38115339..38115348,+p9@Rell2
Mm9::chr2:135883816..135883838,+p2@6330527O06Rik
Mm9::chr2:135883874..135883885,+p8@6330527O06Rik
Mm9::chr2:135883903..135883912,+p11@6330527O06Rik
Mm9::chr2:135883943..135883948,+p9@6330527O06Rik
Mm9::chr2:135883981..135883999,+p4@6330527O06Rik
Mm9::chr2:135884006..135884029,+p1@6330527O06Rik
Mm9::chr2:19831623..19831634,+p32@Etl4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.88e-0823
neuroblast (sensu Vertebrata)1.88e-0823

Uber Anatomy
Ontology termp-valuen
regional part of nervous system2.28e-3054
neural tube5.45e-3052
neural rod5.45e-3052
future spinal cord5.45e-3052
neural keel5.45e-3052
neurectoderm1.93e-2964
neural plate1.93e-2964
presumptive neural plate1.93e-2964
gray matter2.31e-2634
central nervous system3.90e-2573
ecto-epithelium1.24e-2473
nervous system3.29e-2475
brain7.63e-2347
future brain7.63e-2347
ectoderm-derived structure4.36e-2295
ectoderm4.36e-2295
presumptive ectoderm4.36e-2295
regional part of brain1.84e-2146
brain grey matter4.10e-1929
regional part of telencephalon4.10e-1929
telencephalon4.10e-1929
occipital lobe4.31e-1910
visual cortex4.31e-1910
neocortex4.31e-1910
pre-chordal neural plate6.61e-1949
structure with developmental contribution from neural crest1.39e-1792
anterior neural tube1.86e-1740
regional part of forebrain3.08e-1639
forebrain3.08e-1639
future forebrain3.08e-1639
regional part of cerebral cortex2.06e-1417
posterior neural tube3.82e-1412
chordal neural plate3.82e-1412
cerebral cortex3.02e-1321
cerebral hemisphere3.02e-1321
pallium3.02e-1321
spinal cord3.82e-116
dorsal region element3.82e-116
dorsum3.82e-116
regional part of spinal cord2.99e-095
gray matter of spinal cord2.99e-095
tube4.99e-09114
anatomical conduit6.58e-08122
regional part of midbrain2.06e-074
midbrain2.06e-074
presumptive midbrain2.06e-074
midbrain neural tube2.06e-074
basal ganglion4.20e-078
nuclear complex of neuraxis4.20e-078
aggregate regional part of brain4.20e-078
collection of basal ganglia4.20e-078
cerebral subcortex4.20e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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