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Coexpression cluster:C4150

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Full id: C4150_CD14_Natural_Basophils_CD8_CD4_Eosinophils_Neutrophils



Phase1 CAGE Peaks

Hg19::chr2:178116976..178116993,+p@chr2:178116976..178116993
+
Hg19::chr2:178117017..178117036,+p@chr2:178117017..178117036
+
Hg19::chr7:12726087..12726107,-p1@BC043260


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
classical monocyte2.06e-6642
CD14-positive, CD16-negative classical monocyte2.06e-6642
defensive cell1.36e-5648
phagocyte1.36e-5648
leukocyte5.51e-54136
myeloid leukocyte1.29e-4972
nongranular leukocyte4.58e-47115
macrophage dendritic cell progenitor1.26e-4361
monopoietic cell7.15e-4359
monocyte7.15e-4359
monoblast7.15e-4359
promonocyte7.15e-4359
hematopoietic lineage restricted progenitor cell2.27e-42120
hematopoietic stem cell9.31e-42168
angioblastic mesenchymal cell9.31e-42168
granulocyte monocyte progenitor cell5.87e-4167
myeloid lineage restricted progenitor cell2.24e-3966
hematopoietic cell1.05e-38177
hematopoietic oligopotent progenitor cell7.59e-38161
hematopoietic multipotent progenitor cell7.59e-38161
myeloid cell7.89e-32108
common myeloid progenitor7.89e-32108
stuff accumulating cell1.93e-2787
intermediate monocyte3.23e-199
CD14-positive, CD16-positive monocyte3.23e-199
mesenchymal cell2.35e-12354
connective tissue cell8.86e-12361
granulocyte4.99e-108
motile cell9.01e-10386
CD4-positive, alpha-beta T cell5.44e-096
natural killer cell2.64e-083
pro-NK cell2.64e-083
basophil1.01e-073
stem cell1.67e-07441
somatic stem cell1.76e-07433
single nucleate cell1.94e-073
mononuclear cell1.94e-073
multi fate stem cell2.24e-07427
naive T cell4.28e-073
blood cell4.84e-0711
non-classical monocyte8.34e-073
CD14-low, CD16-positive monocyte8.34e-073
lymphoid lineage restricted progenitor cell8.40e-0752
Uber Anatomy
Ontology termp-valuen
hematopoietic system5.58e-4098
blood island5.58e-4098
bone marrow1.09e-3676
hemolymphoid system1.54e-36108
bone element3.90e-3382
immune system4.85e-3193
skeletal element3.89e-2990
skeletal system4.79e-25100
lateral plate mesoderm7.99e-14203
connective tissue5.35e-11371
musculoskeletal system1.50e-10167


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.178364
MA0004.11.93041
MA0006.10.639288
MA0007.10.804807
MA0009.11.3275
MA0014.10.118426
MA0017.10.686276
MA0019.10.990656
MA0024.11.21731
MA0025.11.46617
MA0027.12.95767
MA0028.10.658629
MA0029.11.23771
MA0030.11.22561
MA0031.11.15713
MA0038.10.94098
MA0040.11.24388
MA0041.10.847069
MA0042.10.810843
MA0043.11.32783
MA0046.11.31611
MA0048.10.341392
MA0050.10.81185
MA0051.10.936307
MA0052.11.24796
MA0055.11.67416
MA0056.10
MA0057.10.333427
MA0058.12.8588
MA0059.11.70014
MA0060.10.492218
MA0061.11.15625
MA0063.10
MA0066.10.941452
MA0067.11.65513
MA0068.10.405474
MA0069.11.31207
MA0070.12.89432
MA0071.10.897953
MA0072.11.29561
MA0073.10.0185922
MA0074.10.935474
MA0076.10.734647
MA0077.11.28751
MA0078.11.04495
MA0081.10.714712
MA0083.11.33535
MA0084.11.84562
MA0087.11.29304
MA0088.10.257905
MA0089.10
MA0090.10.751469
MA0091.10.829044
MA0092.10.785956
MA0093.11.55117
MA0095.10
MA0098.10
MA0100.10.956299
MA0101.10.646932
MA0103.10.628063
MA0105.10.31555
MA0106.10.986396
MA0107.10.556367
MA0108.21.15387
MA0109.10
MA0111.10.767139
MA0113.11.00436
MA0114.10.549955
MA0115.11.57693
MA0116.10.560723
MA0117.11.36676
MA0119.10.695578
MA0122.11.39371
MA0124.11.53432
MA0125.11.44766
MA0130.10
MA0131.11.06461
MA0132.10
MA0133.10
MA0135.11.35921
MA0136.10.948776
MA0139.10.440097
MA0140.10.894983
MA0141.10.712476
MA0142.11.12317
MA0143.11.00455
MA0144.11.31729
MA0145.10.273764
MA0146.10.107247
MA0147.11.38767
MA0148.10.854239
MA0149.10.884158
MA0062.20.449458
MA0035.20.894194
MA0039.20.432958
MA0138.21.04628
MA0002.20.476938
MA0137.20.666381
MA0104.21.2307
MA0047.20.973066
MA0112.20.264678
MA0065.20.277623
MA0150.10.744617
MA0151.10
MA0152.10.902317
MA0153.11.43021
MA0154.10.312019
MA0155.10.256269
MA0156.11.60572
MA0157.11.09377
MA0158.10
MA0159.10.565904
MA0160.10.871361
MA0161.10
MA0162.10.149099
MA0163.10.122425
MA0164.11.01792
MA0080.20.643061
MA0018.20.987913
MA0099.20.902716
MA0079.20.00160703
MA0102.21.88331
MA0258.10.519674
MA0259.10.575594
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#105137.971147625824820.001974187055288560.0115456446336253
ELF1#199734.258097958807540.01295179875054610.0463386971911988
ELK4#2005316.2356816584680.0002336043955745990.00256006395271936
EP300#203336.77394172622320.003216880500103790.0167765795740707
HNF4A#3172215.42152690863580.005444210486686610.0246804366272707
HNF4G#3174219.16894835096450.003543986611284220.0179770954245428
JUND#372736.994663941871030.002921845042734990.0157085645227118
MAX#414936.452555509007120.003721913834265510.018694414415277
NR3C1#2908314.9730233311730.0002978331194675480.00309383262025774
SIN3A#2594235.408884726815140.006318961977991520.0277404821361688
SP1#666735.69838137814090.005403962701712170.0247038632847815



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.