FFCP PHASE1:Hg19::chr16:68482440..68482453,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55512|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14240|TSSclassifier=S|UniProt=A8K0T6,Q9NY59|association_with_transcript=-31bp_to_NM_018667,uc002ewa.2_5end|coexpression_cluster_id=C10|description=CAGE_peak_2_at_SMPD3_5end|id=chr16:68482440..68482453,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006601;4.62e-14;82!UBERON:0010122;6.53e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.03e-47!86;UBERON:0001017!1.59e-47!82;UBERON:0000073!1.90e-46!94;UBERON:0001016!1.90e-46!94;UBERON:0001049!4.72e-44!57;UBERON:0005068!4.72e-44!57;UBERON:0006241!4.72e-44!57;UBERON:0007135!4.72e-44!57;UBERON:0007023!1.26e-42!115;UBERON:0002780!1.86e-38!41;UBERON:0001890!1.86e-38!41;UBERON:0006240!1.86e-38!41;UBERON:0000955!5.80e-38!69;UBERON:0006238!5.80e-38!69;UBERON:0003080!3.11e-37!42;UBERON:0002616!3.66e-36!59;UBERON:0001869!4.60e-33!32;UBERON:0001893!8.80e-33!34;UBERON:0002020!1.97e-32!34;UBERON:0003528!1.97e-32!34;UBERON:0002791!1.96e-31!33;UBERON:0003075!3.98e-30!86;UBERON:0007284!3.98e-30!86;UBERON:0002619!2.87e-28!22;UBERON:0002346!5.40e-28!90;UBERON:0003056!5.76e-26!61;UBERON:0001950!8.81e-26!20;UBERON:0000956!5.02e-24!25;UBERON:0000203!5.02e-24!25;UBERON:0004121!2.73e-21!169;UBERON:0000924!2.69e-20!173;UBERON:0006601!2.69e-20!173;UBERON:0000033!3.75e-20!123;UBERON:0000153!5.68e-20!129;UBERON:0007811!5.68e-20!129;UBERON:0002420!2.07e-10!9;UBERON:0007245!2.07e-10!9;UBERON:0010009!2.07e-10!9;UBERON:0010011!2.07e-10!9;UBERON:0000454!2.07e-10!9;UBERON:0002308!8.71e-10!9;UBERON:0000125!8.71e-10!9;UBERON:0001871!5.00e-09!7;UBERON:0000200!6.37e-09!6;UBERON:0003076!2.55e-08!15;UBERON:0003057!2.55e-08!15;UBERON:0002021!2.74e-08!5;UBERON:0000349!3.86e-08!5;UBERON:0000025!4.70e-08!194;UBERON:0001872!5.79e-08!5;UBERON:0009663!7.93e-08!7;UBERON:0000369!4.18e-07!4;UBERON:0002435!4.18e-07!4;UBERON:0000204!4.18e-07!4;UBERON:0010082!4.18e-07!4;UBERON:0001894!5.06e-07!7;UBERON:0006222!5.06e-07!7;UBERON:0000480!6.52e-07!626;UBERON:0000062!9.14e-07!511|ontology_enrichment_uberon_v019=UBERON:0001869;8.12e-59;32!UBERON:0002619;6.92e-58;22!UBERON:0002791;8.51e-56;32!UBERON:0003528;5.92e-54;34!UBERON:0002020;5.92e-54;34!UBERON:0001893;7.75e-53;34!UBERON:0001950;4.15e-52;20!UBERON:0000956;1.59e-50;25!UBERON:0000203;1.59e-50;25!UBERON:0002780;5.71e-48;41!UBERON:0001890;5.71e-48;41!UBERON:0000073;1.06e-38;53!UBERON:0002616;1.06e-38;53!UBERON:0000955;5.38e-32;68!UBERON:0001017;2.46e-27;75!UBERON:0001016;7.86e-24;83!UBERON:0000200;5.16e-18;6!UBERON:0002420;8.91e-18;9!UBERON:0007245;8.91e-18;9!UBERON:0010009;8.91e-18;9!UBERON:0010011;8.91e-18;9!UBERON:0000454;8.91e-18;9!UBERON:0002021;8.11e-17;5!UBERON:0000349;1.27e-16;5!UBERON:0001871;1.92e-16;6!UBERON:0000369;3.17e-14;4!UBERON:0002435;3.17e-14;4!UBERON:0000204;3.17e-14;4!UBERON:0000125;6.54e-13;9!UBERON:0002308;6.54e-13;9!UBERON:0009663;3.60e-12;7!UBERON:0001872;4.40e-11;5!UBERON:0005383;5.40e-11;3!UBERON:0005382;5.40e-11;3!UBERON:0007023;6.83e-11;114!UBERON:0011216;3.42e-10;132!UBERON:0001870;6.65e-10;3!UBERON:0001873;6.53e-08;2!UBERON:0001876;1.07e-07;2!UBERON:0001954;2.22e-07;2!UBERON:0003022;2.22e-07;2!UBERON:0002421;2.22e-07;2!UBERON:0002600;2.22e-07;2!UBERON:0001894;2.39e-07;7!UBERON:0000007;4.25e-07;2!UBERON:0002771;7.99e-07;2!UBERON:0002702;7.99e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.22e-72,81;UBERON:0001016,4.54e-70,89;UBERON:0000073,3.64e-69,53;UBERON:0002616,3.64e-69,53;UBERON:0001049,7.52e-69,56;UBERON:0005068,7.52e-69,56;UBERON:0006241,7.52e-69,56;UBERON:0007135,7.52e-69,56;UBERON:0002780,5.50e-68,41;UBERON:0001890,5.50e-68,41;UBERON:0003080,5.50e-68,41;UBERON:0006240,5.50e-68,41;UBERON:0001869,9.36e-67,32;UBERON:0000955,2.32e-64,68;UBERON:0006238,2.32e-64,68;UBERON:0001893,1.68e-62,34;UBERON:0003528,5.00e-62,34;UBERON:0002020,5.00e-62,34;UBERON:0002791,1.58e-61,32;UBERON:0002619,3.93e-58,22;UBERON:0001950,1.93e-52,20;UBERON:0000956,9.65e-51,25;UBERON:0000203,9.65e-51,25;UBERON:0003075,1.05e-46,82;UBERON:0007284,1.05e-46,82;UBERON:0003056,3.92e-46,61;UBERON:0002346,4.29e-44,86;UBERON:0010371,8.15e-35,104;UBERON:0007023,6.00e-33,114;UBERON:0004121,1.81e-31,171;UBERON:0000924,1.81e-31,171;UBERON:0006601,1.81e-31,171;UBERON:0011216,5.77e-28,223;UBERON:0010314,4.51e-27,132;UBERON:0000200,2.55e-18,6;UBERON:0002420,9.42e-18,9;UBERON:0007245,9.42e-18,9;UBERON:0010009,9.42e-18,9;UBERON:0010011,9.42e-18,9;UBERON:0000454,9.42e-18,9;UBERON:0002021,7.05e-17,5;UBERON:0001871,1.39e-16,6;UBERON:0000349,1.53e-16,5;UBERON:0000025,1.57e-15,192;UBERON:0000369,3.40e-14,4;UBERON:0002435,3.40e-14,4;UBERON:0000204,3.40e-14,4;UBERON:0010082,3.40e-14,4;UBERON:0000125,8.01e-13,9;UBERON:0002308,8.01e-13,9;UBERON:0009663,4.01e-12,7;UBERON:0001872,4.09e-11,5;UBERON:0005383,5.60e-11,3;UBERON:0005382,5.60e-11,3;UBERON:0004111,1.51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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55512 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14240 | |||
|TSSclassifier=S | |||
|UniProt=A8K0T6,Q9NY59 | |||
|association_with_transcript=-31bp_to_NM_018667,uc002ewa.2_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_2_at_SMPD3_5end | |||
|id=chr16:68482440..68482453,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.62e-14;82!UBERON:0010122;6.53e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.03e-47!86;UBERON:0001017!1.59e-47!82;UBERON:0000073!1.90e-46!94;UBERON:0001016!1.90e-46!94;UBERON:0001049!4.72e-44!57;UBERON:0005068!4.72e-44!57;UBERON:0006241!4.72e-44!57;UBERON:0007135!4.72e-44!57;UBERON:0007023!1.26e-42!115;UBERON:0002780!1.86e-38!41;UBERON:0001890!1.86e-38!41;UBERON:0006240!1.86e-38!41;UBERON:0000955!5.80e-38!69;UBERON:0006238!5.80e-38!69;UBERON:0003080!3.11e-37!42;UBERON:0002616!3.66e-36!59;UBERON:0001869!4.60e-33!32;UBERON:0001893!8.80e-33!34;UBERON:0002020!1.97e-32!34;UBERON:0003528!1.97e-32!34;UBERON:0002791!1.96e-31!33;UBERON:0003075!3.98e-30!86;UBERON:0007284!3.98e-30!86;UBERON:0002619!2.87e-28!22;UBERON:0002346!5.40e-28!90;UBERON:0003056!5.76e-26!61;UBERON:0001950!8.81e-26!20;UBERON:0000956!5.02e-24!25;UBERON:0000203!5.02e-24!25;UBERON:0004121!2.73e-21!169;UBERON:0000924!2.69e-20!173;UBERON:0006601!2.69e-20!173;UBERON:0000033!3.75e-20!123;UBERON:0000153!5.68e-20!129;UBERON:0007811!5.68e-20!129;UBERON:0002420!2.07e-10!9;UBERON:0007245!2.07e-10!9;UBERON:0010009!2.07e-10!9;UBERON:0010011!2.07e-10!9;UBERON:0000454!2.07e-10!9;UBERON:0002308!8.71e-10!9;UBERON:0000125!8.71e-10!9;UBERON:0001871!5.00e-09!7;UBERON:0000200!6.37e-09!6;UBERON:0003076!2.55e-08!15;UBERON:0003057!2.55e-08!15;UBERON:0002021!2.74e-08!5;UBERON:0000349!3.86e-08!5;UBERON:0000025!4.70e-08!194;UBERON:0001872!5.79e-08!5;UBERON:0009663!7.93e-08!7;UBERON:0000369!4.18e-07!4;UBERON:0002435!4.18e-07!4;UBERON:0000204!4.18e-07!4;UBERON:0010082!4.18e-07!4;UBERON:0001894!5.06e-07!7;UBERON:0006222!5.06e-07!7;UBERON:0000480!6.52e-07!626;UBERON:0000062!9.14e-07!511 | |||
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|short_description=p2@SMPD3 | |||
}} |
Revision as of 11:17, 11 September 2013
Short description: | p2@SMPD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SMPD3_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -31bp_to_NM_018667, uc002ewa.2_5end |
EntrezGene: | SMPD3 |
HGNC: | 14240 |
UniProt: | A8K0T6Q9NY59 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.