FFCP PHASE1:Mm9::chr5:72091216..72091236,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14400|HGNC=|MCL_coexpression_id=1|UniProt=P50571,Q53WT3,Q8C446|association_with_transcript=-18bp_to_NM_008069,uc008xrb.1_5end|description=CAGE_peak_3_at_Gabrb1_5end|id=chr5:72091216..72091236,+|ontology_enrichment_celltype=CL:0000117!2.14e-09!23;CL:0000337!2.14e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-11,23;CL:0000337,1.52e-11,23;CL:0000540,3.65e-07,33;CL:0000047,3.65e-07,33;CL:0000031,3.65e-07,33;CL:0000404,3.65e-07,33;CL:0002610,6.50e-07,3;CL:0002612,8.16e-07,3;CL:0002614,8.54e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.72e-25!52;UBERON:0005068!1.72e-25!52;UBERON:0006241!1.72e-25!52;UBERON:0007135!1.72e-25!52;UBERON:0000955!3.73e-24!50;UBERON:0006238!3.73e-24!50;UBERON:0001017!1.34e-23!73;UBERON:0005743!1.34e-23!73;UBERON:0002616!3.03e-23!49;UBERON:0000073!4.57e-23!75;UBERON:0001016!4.57e-23!75;UBERON:0000033!2.87e-21!63;UBERON:0002020!1.01e-19!34;UBERON:0002346!1.43e-19!71;UBERON:0003075!1.43e-19!71;UBERON:0007284!1.43e-19!71;UBERON:0003080!9.35e-18!40;UBERON:0002780!6.06e-17!39;UBERON:0001890!6.06e-17!39;UBERON:0006240!6.06e-17!39;UBERON:0003056!8.32e-17!49;UBERON:0004121!1.91e-16!102;UBERON:0000924!1.91e-16!102;UBERON:0006601!1.91e-16!102;UBERON:0002791!5.88e-16!29;UBERON:0003528!5.88e-16!29;UBERON:0001893!5.88e-16!29;UBERON:0000956!1.01e-10!21;UBERON:0001869!1.01e-10!21;UBERON:0000203!1.01e-10!21;UBERON:0007811!1.55e-10!86;UBERON:0002619!6.41e-10!17;UBERON:0002021!2.70e-09!10;UBERON:0000411!2.70e-09!10;UBERON:0001950!2.70e-09!10;UBERON:0000153!7.07e-09!94;UBERON:0000025!2.04e-08!114;UBERON:0003076!2.23e-08!12;UBERON:0003057!2.23e-08!12;UBERON:0004111!4.11e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.07e-41,54;UBERON:0001049,3.70e-38,52;UBERON:0005068,3.70e-38,52;UBERON:0006241,3.70e-38,52;UBERON:0007135,3.70e-38,52;UBERON:0001017,1.25e-34,73;UBERON:0001016,1.83e-33,75;UBERON:0002020,1.13e-31,34;UBERON:0000955,2.32e-30,47;UBERON:0006238,2.32e-30,47;UBERON:0002346,2.05e-29,64;UBERON:0003075,2.05e-29,64;UBERON:0007284,2.05e-29,64;UBERON:0002616,1.28e-28,46;UBERON:0010371,9.59e-25,73;UBERON:0004121,1.74e-24,95;UBERON:0000924,1.74e-24,95;UBERON:0006601,1.74e-24,95;UBERON:0003080,8.56e-24,40;UBERON:0003528,1.05e-23,29;UBERON:0002791,1.05e-23,29;UBERON:0001893,1.05e-23,29;UBERON:0002780,3.25e-22,39;UBERON:0001890,3.25e-22,39;UBERON:0006240,3.25e-22,39;UBERON:0002619,8.03e-21,17;UBERON:0002021,3.61e-19,10;UBERON:0000411,3.61e-19,10;UBERON:0001950,3.61e-19,10;UBERON:0010314,3.95e-19,92;UBERON:0000956,6.42e-19,21;UBERON:0001869,6.42e-19,21;UBERON:0000203,6.42e-19,21;UBERON:0003056,2.92e-18,49;UBERON:0000025,4.98e-17,114;UBERON:0004111,2.54e-15,122;UBERON:0003076,4.08e-15,12;UBERON:0003057,4.08e-15,12;UBERON:0002240,2.10e-11,6;UBERON:0005174,2.10e-11,6;UBERON:0001137,2.10e-11,6;UBERON:0001948,1.22e-09,5;UBERON:0002315,1.22e-09,5;UBERON:0002950,1.21e-08,4;UBERON:0001891,1.21e-08,4;UBERON:0009616,1.21e-08,4;UBERON:0010286,1.21e-08,4;UBERON:0000483,2.16e-07,174;UBERON:0011216,2.71e-07,194;UBERON:0000119,3.28e-07,176;UBERON:0004684,6.50e-07,3;UBERON:0002275,6.50e-07,3;UBERON:0002257,8.16e-07,3;UBERON:0002038,8.54e-07,3;UBERON:0009663,8.54e-07,3;UBERON:0009661,8.54e-07,3;UBERON:0000125,8.54e-07,3;UBERON:0002308,8.54e-07,3|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,2.19686182734472,2.91644848611425,0.55994568650145,0,0,0,0,0,0,1.03134418455488,0.606949382578793,0,1.26766280701236,0,0,0,0,0,0,0.768436610643109,0.103689612308478,0.135005938331691,0.210324961351382,1.42825492201902,2.20868540951614,0,0.0958454710182364,0,4.40463523997555,4.85211884723713,4.76180253094355,0.791317726381163,0.823388792421687,1.04182674111352,1.67509799400829,4.50210088025344,8.09830713217094,4.41942878210502,6.26435395516053,2.79599168737951,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0.346970653532272,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,4.68449275218475,3.35114730901528,0,0,0,0,5.24267237916879,5.49000723382352,0.628271760564322,5.56237824615285,4.34716277461562,3.94797284663164,5.51620294430376,1.73126918545538,0.248813941220186,1.0108910337347,0,0.130120442962704,0,0.360124259610698,0,0.340182495756639,0.2562274405697,0.281105173679186,0.258703370739016,0,0,0,0,0.834141747676794,0,0,1.39323986772945,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0.164167464079095,0,0,0,0,11.1453672738987,4.32199371992995,0,0,0.213288250535234,0.696710015581316,0.257734922644187,0.605050573870028,0,0,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.189709611372772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0.234690248288502,0,0,0.390267295715598,0.157635144106191,0,0,0,0.518054945597687,0.289298117163023,0,0,0,0,6.90367536947505,4.57125577709592,0,0,0,0,0,0,0,0,0.404810701674894,0,0,5.78378369559253,0.709700426041343,1.42452482933804,0.977321756121456,1.64970122972535,0,0,0,0.377210159511796,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,1.36175842301515,0,0,0.214337035031592,0,0.356737635204141,0.822745103010605,0.608929898229199,0,0,0,0,0,0.0603129249281559,0,0,0,4.63563255026274,0,0,0,0,0,0,0,0,0,0,0,0.609958401380546,0,0,0,0,0,0,0,0,0,0.598066184175915,0.496375471371293,0.583353565032143,0.387479470433193,0.675824501963113,0.469428954583016,0.5208175393758,0.419437377702843,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,1.6942555278512,5.52390283808612,2.86447756719698,6.18671456437275,5.48066015816514,6.7985450765073,3.37511250115903,5.85417564191487,3.62513927187364,4.14208249401456,0,0,0.682934423016537,0.486213434136588,0.209613162627982,0,0,0.618105171716683,0.320919209591815,0.505394423527595,0,0,0.561849044819294,0.640251524048693,0.689225627467359,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,0.294397840268795,0,0.354951612318675,0,0.436039249896986,0.564656282491984,0.761531471025089,0.548783918618318,0.263069711437843,0.135804113845862,0,0.355905054372522,0,0,0.929621047115796,0.192906610981141,0.249810577937946,0.467863216890817,0.429742108096597,0.191288332068843,0,0.927471342481686|short_description=p3@Gabrb1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14400 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P50571,uniprot:Q53WT3,uniprot:Q8C446 | |||
|association_with_transcript=-18bp_to_NM_008069,uc008xrb.1_5end | |||
|cluster_id=chr5:72091216..72091236,+ | |||
|description=CAGE_peak_3_at_Gabrb1_5end | |||
|id=chr5:72091216..72091236,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.14e-09!23;CL:0000337!2.14e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.52e-11,23;CL:0000337,1.52e-11,23;CL:0000540,3.65e-07,33;CL:0000047,3.65e-07,33;CL:0000031,3.65e-07,33;CL:0000404,3.65e-07,33;CL:0002610,6.50e-07,3;CL:0002612,8.16e-07,3;CL:0002614,8.54e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.72e-25!52;UBERON:0005068!1.72e-25!52;UBERON:0006241!1.72e-25!52;UBERON:0007135!1.72e-25!52;UBERON:0000955!3.73e-24!50;UBERON:0006238!3.73e-24!50;UBERON:0001017!1.34e-23!73;UBERON:0005743!1.34e-23!73;UBERON:0002616!3.03e-23!49;UBERON:0000073!4.57e-23!75;UBERON:0001016!4.57e-23!75;UBERON:0000033!2.87e-21!63;UBERON:0002020!1.01e-19!34;UBERON:0002346!1.43e-19!71;UBERON:0003075!1.43e-19!71;UBERON:0007284!1.43e-19!71;UBERON:0003080!9.35e-18!40;UBERON:0002780!6.06e-17!39;UBERON:0001890!6.06e-17!39;UBERON:0006240!6.06e-17!39;UBERON:0003056!8.32e-17!49;UBERON:0004121!1.91e-16!102;UBERON:0000924!1.91e-16!102;UBERON:0006601!1.91e-16!102;UBERON:0002791!5.88e-16!29;UBERON:0003528!5.88e-16!29;UBERON:0001893!5.88e-16!29;UBERON:0000956!1.01e-10!21;UBERON:0001869!1.01e-10!21;UBERON:0000203!1.01e-10!21;UBERON:0007811!1.55e-10!86;UBERON:0002619!6.41e-10!17;UBERON:0002021!2.70e-09!10;UBERON:0000411!2.70e-09!10;UBERON:0001950!2.70e-09!10;UBERON:0000153!7.07e-09!94;UBERON:0000025!2.04e-08!114;UBERON:0003076!2.23e-08!12;UBERON:0003057!2.23e-08!12;UBERON:0004111!4.11e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.07e-41,54;UBERON:0001049,3.70e-38,52;UBERON:0005068,3.70e-38,52;UBERON:0006241,3.70e-38,52;UBERON:0007135,3.70e-38,52;UBERON:0001017,1.25e-34,73;UBERON:0001016,1.83e-33,75;UBERON:0002020,1.13e-31,34;UBERON:0000955,2.32e-30,47;UBERON:0006238,2.32e-30,47;UBERON:0002346,2.05e-29,64;UBERON:0003075,2.05e-29,64;UBERON:0007284,2.05e-29,64;UBERON:0002616,1.28e-28,46;UBERON:0010371,9.59e-25,73;UBERON:0004121,1.74e-24,95;UBERON:0000924,1.74e-24,95;UBERON:0006601,1.74e-24,95;UBERON:0003080,8.56e-24,40;UBERON:0003528,1.05e-23,29;UBERON:0002791,1.05e-23,29;UBERON:0001893,1.05e-23,29;UBERON:0002780,3.25e-22,39;UBERON:0001890,3.25e-22,39;UBERON:0006240,3.25e-22,39;UBERON:0002619,8.03e-21,17;UBERON:0002021,3.61e-19,10;UBERON:0000411,3.61e-19,10;UBERON:0001950,3.61e-19,10;UBERON:0010314,3.95e-19,92;UBERON:0000956,6.42e-19,21;UBERON:0001869,6.42e-19,21;UBERON:0000203,6.42e-19,21;UBERON:0003056,2.92e-18,49;UBERON:0000025,4.98e-17,114;UBERON:0004111,2.54e-15,122;UBERON:0003076,4.08e-15,12;UBERON:0003057,4.08e-15,12;UBERON:0002240,2.10e-11,6;UBERON:0005174,2.10e-11,6;UBERON:0001137,2.10e-11,6;UBERON:0001948,1.22e-09,5;UBERON:0002315,1.22e-09,5;UBERON:0002950,1.21e-08,4;UBERON:0001891,1.21e-08,4;UBERON:0009616,1.21e-08,4;UBERON:0010286,1.21e-08,4;UBERON:0000483,2.16e-07,174;UBERON:0011216,2.71e-07,194;UBERON:0000119,3.28e-07,176;UBERON:0004684,6.50e-07,3;UBERON:0002275,6.50e-07,3;UBERON:0002257,8.16e-07,3;UBERON:0002038,8.54e-07,3;UBERON:0009663,8.54e-07,3;UBERON:0009661,8.54e-07,3;UBERON:0000125,8.54e-07,3;UBERON:0002308,8.54e-07,3 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,2.19686182734472,2.91644848611425,0.55994568650145,0,0,0,0,0,0,1.03134418455488,0.606949382578793,0,1.26766280701236,0,0,0,0,0,0,0.768436610643109,0.103689612308478,0.135005938331691,0.210324961351382,1.42825492201902,2.20868540951614,0,0.0958454710182364,0,4.40463523997555,4.85211884723713,4.76180253094355,0.791317726381163,0.823388792421687,1.04182674111352,1.67509799400829,4.50210088025344,8.09830713217094,4.41942878210502,6.26435395516053,2.79599168737951,0.075726193333184,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0.346970653532272,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,4.68449275218475,3.35114730901528,0,0,0,0,5.24267237916879,5.49000723382352,0.628271760564322,5.56237824615285,4.34716277461562,3.94797284663164,5.51620294430376,1.73126918545538,0.248813941220186,1.0108910337347,0,0.130120442962704,0,0.360124259610698,0,0.340182495756639,0.2562274405697,0.281105173679186,0.258703370739016,0,0,0,0,0.834141747676794,0,0,1.39323986772945,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0,0,0.164167464079095,0,0,0,0,11.1453672738987,4.32199371992995,0,0,0.213288250535234,0.696710015581316,0.257734922644187,0.605050573870028,0,0,0,0,0,0,0,0,0,0,0,0.228497025219458,0,0,0.193952487167626,0.140271639780637,0.189709611372772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0.234690248288502,0,0,0.390267295715598,0.157635144106191,0,0,0,0.518054945597687,0.289298117163023,0,0,0,0,6.90367536947505,4.57125577709592,0,0,0,0,0,0,0,0,0.404810701674894,0,0,5.78378369559253,0.709700426041343,1.42452482933804,0.977321756121456,1.64970122972535,0,0,0,0.377210159511796,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,1.36175842301515,0,0,0.214337035031592,0,0.356737635204141,0.822745103010605,0.608929898229199,0,0,0,0,0,0.0603129249281559,0,0,0,4.63563255026274,0,0,0,0,0,0,0,0,0,0,0,0.609958401380546,0,0,0,0,0,0,0,0,0,0.598066184175915,0.496375471371293,0.583353565032143,0.387479470433193,0.675824501963113,0.469428954583016,0.5208175393758,0.419437377702843,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,1.6942555278512,5.52390283808612,2.86447756719698,6.18671456437275,5.48066015816514,6.7985450765073,3.37511250115903,5.85417564191487,3.62513927187364,4.14208249401456,0,0,0.682934423016537,0.486213434136588,0.209613162627982,0,0,0.618105171716683,0.320919209591815,0.505394423527595,0,0,0.561849044819294,0.640251524048693,0.689225627467359,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,0.294397840268795,0,0.354951612318675,0,0.436039249896986,0.564656282491984,0.761531471025089,0.548783918618318,0.263069711437843,0.135804113845862,0,0.355905054372522,0,0,0.929621047115796,0.192906610981141,0.249810577937946,0.467863216890817,0.429742108096597,0.191288332068843,0,0.927471342481686 | |||
|short_description=p3@Gabrb1 | |||
}} |
Revision as of 13:58, 4 August 2015
Short description: | p3@Gabrb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gabrb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -18bp_to_NM_008069, uc008xrb.1_5end |
EntrezGene: | 14400 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.52e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-11 | 23 |
neuron | 3.65e-07 | 33 |
neuronal stem cell | 3.65e-07 | 33 |
neuroblast | 3.65e-07 | 33 |
electrically signaling cell | 3.65e-07 | 33 |
raphe nuclei neuron | 6.50e-07 | 3 |
neuron of the ventral spinal cord | 8.16e-07 | 3 |
neuron of the substantia nigra | 8.54e-07 | 3 |