FFCP PHASE1:Hg19::chr9:3525727..3525828,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5991 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9984 | |||
|TSSclassifier=strong | |||
|UniProt=E9PGD7,E9PGD6,F6UGA0,P48380,Q5JTM2 | |||
|association_with_transcript=154bp_to_ENST00000302303,ENST00000381985,ENST00000381986,ENST00000381992,ENST00000382004,NM_002919,NM_134428,uc003zhr.2,uc003zhs.1,uc010mhd.2,uc010mhe.1_5end | |||
|cluster_id=chr9:3525727..3525828,- | |||
|coexpression_cluster_id=C280 | |||
|description=CAGE_peak_2_at_RFX3_5end | |||
|id=chr9:3525727..3525828,- | |||
|ontology_enrichment_celltype=CL:0000738!2.84e-31!140;CL:0002031!2.10e-25!124;CL:0002087!2.28e-24!119;CL:0000037!1.57e-23!172;CL:0000566!1.57e-23!172;CL:0002032!4.39e-21!165;CL:0000837!4.39e-21!165;CL:0000988!1.16e-20!182;CL:0002057!1.07e-18!42;CL:0000838!3.86e-16!52;CL:0000542!5.26e-16!53;CL:0000051!5.26e-16!53;CL:0000860!8.82e-16!45;CL:0000766!3.42e-13!76;CL:0000557!9.11e-11!71;CL:0000791!9.81e-11!18;CL:0000789!9.81e-11!18;CL:0002420!9.81e-11!18;CL:0002419!9.81e-11!18;CL:0000790!9.81e-11!18;CL:0000839!7.28e-10!70;CL:0000084!1.70e-09!25;CL:0000827!1.70e-09!25;CL:0002009!8.73e-09!65;CL:0002194!2.41e-08!63;CL:0000576!2.41e-08!63;CL:0000040!2.41e-08!63;CL:0000559!2.41e-08!63;CL:0000763!8.17e-08!112;CL:0000049!8.17e-08!112;CL:0000625!1.19e-07!11;CL:0000236!7.24e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.03e-15;33!CL:0002057;4.03e-15;33!CL:0000576;4.12e-11;48!CL:0000791;5.16e-11;18!CL:0000789;5.16e-11;18!CL:0002419;5.16e-11;18!CL:0002087;1.23e-10;104!CL:0000542;2.40e-10;53!CL:0000084;1.55e-09;25!CL:0000473;3.49e-09;39!CL:0000234;3.49e-09;39!CL:0000766;4.52e-09;69!CL:0000625;3.85e-08;11!CL:0000738;1.07e-07;136!CL:0000236;3.40e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.35e-36,136;CL:0002031,1.08e-29,120;CL:0002087,1.40e-28,115;CL:0000037,4.00e-27,168;CL:0002032,2.09e-24,161;CL:0000837,2.09e-24,161;CL:0000988,1.05e-23,177;CL:0000860,5.37e-20,42;CL:0002057,5.37e-20,42;CL:0000766,8.99e-17,72;CL:0000838,1.19e-16,52;CL:0000542,1.63e-16,53;CL:0000051,1.63e-16,53;CL:0000473,3.27e-15,48;CL:0000234,3.27e-15,48;CL:0000557,6.33e-14,67;CL:0000839,7.82e-13,66;CL:0002009,1.33e-11,61;CL:0002194,4.29e-11,59;CL:0000576,4.29e-11,59;CL:0000040,4.29e-11,59;CL:0000559,4.29e-11,59;CL:0000791,5.69e-11,18;CL:0000789,5.69e-11,18;CL:0002420,5.69e-11,18;CL:0002419,5.69e-11,18;CL:0000790,5.69e-11,18;CL:0000763,8.39e-10,108;CL:0000049,8.39e-10,108;CL:0000084,1.78e-09,25;CL:0000827,1.78e-09,25;CL:0000625,4.11e-08,11;CL:0000236,2.85e-07,14;CL:0000945,9.09e-07,24;CL:0000826,9.09e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;1.07e-14;42!CL:0000790;5.16e-11;18!CL:0000051;2.40e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.68e-20!115;UBERON:0001049!1.42e-14!57;UBERON:0005068!1.42e-14!57;UBERON:0006241!1.42e-14!57;UBERON:0007135!1.42e-14!57;UBERON:0001017!2.51e-14!82;UBERON:0002390!3.10e-13!102;UBERON:0003061!3.10e-13!102;UBERON:0005743!6.82e-13!86;UBERON:0002780!8.84e-13!41;UBERON:0001890!8.84e-13!41;UBERON:0006240!8.84e-13!41;UBERON:0003080!1.54e-12!42;UBERON:0000073!1.22e-11!94;UBERON:0001016!1.22e-11!94;UBERON:0000955!2.46e-11!69;UBERON:0006238!2.46e-11!69;UBERON:0001893!3.27e-11!34;UBERON:0002020!3.88e-11!34;UBERON:0003528!3.88e-11!34;UBERON:0002616!4.48e-11!59;UBERON:0002791!5.68e-11!33;UBERON:0002193!6.21e-11!112;UBERON:0001869!1.17e-10!32;UBERON:0001474!7.64e-09!86;UBERON:0002371!1.00e-08!80;UBERON:0000956!1.56e-08!25;UBERON:0000203!1.56e-08!25;UBERON:0002619!1.76e-08!22;UBERON:0001950!1.25e-07!20;UBERON:0002346!8.51e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.79e-10;34!UBERON:0002020;1.79e-10;34!UBERON:0001893;1.86e-10;34!UBERON:0001869;1.91e-10;32!UBERON:0002791;2.05e-10;32!UBERON:0002780;2.80e-10;41!UBERON:0001890;2.80e-10;41!UBERON:0000956;3.60e-09;25!UBERON:0000203;3.60e-09;25!UBERON:0002619;4.01e-09;22!UBERON:0000073;5.32e-09;53!UBERON:0002616;5.32e-09;53!UBERON:0001950;3.36e-08;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.50e-21,114;UBERON:0002390,2.50e-16,98;UBERON:0003061,2.50e-16,98;UBERON:0001049,7.41e-16,56;UBERON:0005068,7.41e-16,56;UBERON:0006241,7.41e-16,56;UBERON:0007135,7.41e-16,56;UBERON:0001017,1.81e-15,81;UBERON:0000073,1.66e-14,53;UBERON:0002616,1.66e-14,53;UBERON:0001016,1.02e-13,89;UBERON:0002780,1.25e-13,41;UBERON:0001890,1.25e-13,41;UBERON:0003080,1.25e-13,41;UBERON:0006240,1.25e-13,41;UBERON:0002193,4.08e-13,108;UBERON:0000955,3.08e-12,68;UBERON:0006238,3.08e-12,68;UBERON:0001893,6.07e-12,34;UBERON:0003528,7.29e-12,34;UBERON:0002020,7.29e-12,34;UBERON:0002371,1.07e-11,76;UBERON:0001474,1.26e-11,82;UBERON:0001869,2.39e-11,32;UBERON:0002791,3.24e-11,32;UBERON:0004765,9.55e-10,90;UBERON:0002405,1.33e-09,93;UBERON:0000956,4.62e-09,25;UBERON:0000203,4.62e-09,25;UBERON:0002619,5.24e-09,22;UBERON:0002346,1.16e-08,86;UBERON:0003075,1.36e-08,82;UBERON:0007284,1.36e-08,82;UBERON:0001950,4.31e-08,20;UBERON:0001434,2.06e-07,100 | |||
|phase1_expression=0.363356758541113,0,0.704772020479856,0,0,0.872338524100369,0,1.26343974685366,0.261185628199839,0,0,0,0,1.73272894144065,1.65698687863958,0,0.602694528023977,0.730310090387373,1.46379839637152,0.492484232307152,0,1.88072832886853,5.43848375549008,2.73748850145768,3.26410862946487,3.20936304141395,1.72411237844886,1.57421562627358,65.691834233767,88.6645909604561,32.666202019692,0,0,0.369754010166788,7.97912165977107,6.68195392690881,31.7088474481635,21.6058209327432,27.0735004084691,36.674837150979,0.447830948479849,0,1.03030227053675,20.3557534291391,11.3362783106643,17.223468344335,20.6861842846059,8.63452564845834,10.2203102395384,16.9738511470069,21.7736600549736,26.9589742072987,25.8559260552464,14.846147722428,28.4395621848118,26.1656851964221,7.91427835167753,12.8092386133698,38.2604865463628,13.1580901101198,26.8521592835597,24.408996213817,26.3292028060554,25.9997097824943,21.7656928971438,6.24123747160254,8.71951148593805,15.8286659111748,11.9941071236646,19.5469960234605,23.005181100068,13.6262725315399,21.835904733421,5.70389273042243,7.65375479874157,6.28975936525128,7.75067554910816,15.6183968555167,15.7511074963139,17.1007646244749,10.3436672143527,9.86386430329023,15.839662001519,21.2994058392231,27.5747868697702,29.444385357089,13.2130675721884,16.0930683187255,23.1365705474702,16.2189138271012,56.9212969109448,56.3747701796101,65.7509952375394,64.7639510037227,52.6878049202644,14.7495087474043,112.517988505113,117.510218062,119.248869419715,3.17654341242288,55.0808630610768,64.3889015799237,85.723760499481,9.13565746458423,41.8340388614269,48.9589907029803,55.7855959355932,5.37983542847836,8.58391693895196,3.28875809207352,4.14525026678773,11.012517257932,91.3445229078292,96.8497797684761,77.3562876156828,5.89208582027344,108.451399689344,154.288723021701,114.364900792815,18.1582286164735,26.6944216081132,23.7613011112094,46.2265615568762,17.7901389504642,28.7340671070395,21.0731754319175,22.9915839137893,92.5374951401522,97.6156714609802,97.1771750053581,2.43806866313962,0,0.12786256184353,1.44575660953827,0.50133791063589,0.724232594804119,0,0,2.26883561193763,0.665188192387692,1.66886092816939,7.40031776562076,0,0,0,0.174129737299267,0.664789802594326,7.63169997777094,4.0039643754609,11.1437250398869,1.39133685156694,0,0.694281003215189,0,0.419499436209906,1.10047216776027,0.208994966536811,0.258416759169329,1.06729878806013,0.66944122552934,1.61131726843659,0,0.488124115096339,0.367663080345869,0,2.23249320710199,1.12264686313085,1.23872628531654,0,0,0.366403487860815,5.27121669744253,50.4114343392823,0,0.496971951695318,1.2663051166458,1.45650098894541,4.58938593198102,0.354668382198357,0,1.06748995729705,0.98667019366864,0.311211035399766,0.942974704487816,0.653847612453835,0.302714855289863,2.88087962239999,0.468642863667593,0.312160076830321,0.570471821544449,0.149448680551801,0.352303495931295,0.809364721840658,0.98315564691574,0,0.859840221182376,0.206651562351531,2.37600571456411,0.989067717114227,0,0,0.168336113954066,0.500474079487857,0.277064115484183,0.438977620880838,0.612975591598039,0.300476117813194,0.794025282120147,11.1221574127094,0.85422955527427,0.211931901159562,9.00273288253207,1.54578793857658,7.9868567414145,0.37223371266318,5.56961896396179,0.194874010322397,8.58274832429989,0.920498986422993,0.323292113637624,20.5905563659636,0.806016785821122,0.169560592310488,0,0.545492241181669,0,1.70763188581434,1.72288698817931,1.85910308591229,6.01234119089148,1.00928340350251,1.82488679537915,0,0,0,2.78620756819187,0,0.118306800039844,0,0.241011029883482,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,5.29755719297581,0.122988438543114,0.343135620597051,0.219500570817251,0,0.100528972411631,0.462942225792648,0,1.03993478527958,0,1.62302566965108,0.821860859650752,0.866198686566443,0.462985512576611,0.951270761172991,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0.16798212819886,0.283550194484773,1.07470227243418,1.74380363108377,0,5.91195885475132,2.81754988842323,132.689993946094,140.516954581537,166.135042389116,0.380987365753014,0,1.17217447210047,1.71072446022705,0.205654985406647,0.300343057843917,0.285826432630578,0.112131084345361,0.87192013766656,0.66004457238855,5.42941206182667,0,0.845302752556,0.26593811658487,0,0,0,0,1.00084595560703,0,0.823240336780769,1.30294473717494,1.06617584622764,2.37585561880029,0.904318131178758,0,0.899756920638513,0,0.502257091432126,2.10833939483032,0.958499421966331,0,4.27910715122155,0.434343920002738,0,0.358121926479791,0.896681151948218,88.2697805704634,94.6605053633281,90.6101836135024,14.7374882049029,19.5209780786433,3.86644406388848,5.19300422536481,7.01732626818479,18.7251755986796,20.9413021442817,28.5946704270864,2.08575535922538,1.50051156317903,0,2.07970861530807,0.892144943985809,1.41932173530541,0.35142424497814,0.300946099727719,0,1.03473071292505,1.32845119707087,0.368738337083406,0.695068915744663,0.195801157462741,0.343143423810856,23.778323004132,34.9457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| |||
|short_description=p2@RFX3 | |||
}} |
Latest revision as of 07:08, 17 September 2015
Short description: | p2@RFX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RFX3_5end |
Coexpression cluster: | C280_Mast_Natural_CD19_CD8_Eosinophils_CD34_CD4 |
Association with transcript: | 154bp_to_ENST00000302303, ENST00000381985, ENST00000381986, ENST00000381992, ENST00000382004, NM_002919, NM_134428, uc003zhr.2, uc003zhs.1, uc010mhd.2, uc010mhe.1_5end |
EntrezGene: | RFX3 |
HGNC: | 9984 |
UniProt: | E9PGD7E9PGD6F6UGA0P48380Q5JTM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.50e-21 | 114 |
hematopoietic system | 2.50e-16 | 98 |
blood island | 2.50e-16 | 98 |
neural tube | 7.41e-16 | 56 |
neural rod | 7.41e-16 | 56 |
future spinal cord | 7.41e-16 | 56 |
neural keel | 7.41e-16 | 56 |
central nervous system | 1.81e-15 | 81 |
regional part of nervous system | 1.66e-14 | 53 |
regional part of brain | 1.66e-14 | 53 |
nervous system | 1.02e-13 | 89 |
regional part of forebrain | 1.25e-13 | 41 |
forebrain | 1.25e-13 | 41 |
anterior neural tube | 1.25e-13 | 41 |
future forebrain | 1.25e-13 | 41 |
hemolymphoid system | 4.08e-13 | 108 |
brain | 3.08e-12 | 68 |
future brain | 3.08e-12 | 68 |
telencephalon | 6.07e-12 | 34 |
brain grey matter | 7.29e-12 | 34 |
gray matter | 7.29e-12 | 34 |
bone marrow | 1.07e-11 | 76 |
bone element | 1.26e-11 | 82 |
cerebral hemisphere | 2.39e-11 | 32 |
regional part of telencephalon | 3.24e-11 | 32 |
skeletal element | 9.55e-10 | 90 |
immune system | 1.33e-09 | 93 |
cerebral cortex | 4.62e-09 | 25 |
pallium | 4.62e-09 | 25 |
regional part of cerebral cortex | 5.24e-09 | 22 |
neurectoderm | 1.16e-08 | 86 |
neural plate | 1.36e-08 | 82 |
presumptive neural plate | 1.36e-08 | 82 |
neocortex | 4.31e-08 | 20 |
skeletal system | 2.06e-07 | 100 |