FFCP PHASE1:Hg19::chr2:45168856..45168867,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |EntrezGene=6496 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |HGNC=10889 | ||
|TSSclassifier=strong | |||
|UniProt=O95343 | |UniProt=O95343 | ||
|association_with_transcript=-34bp_to_ENST00000260653_5end | |association_with_transcript=-34bp_to_ENST00000260653_5end | ||
|cluster_id=chr2:45168856..45168867,+ | |||
|coexpression_cluster_id=C573 | |coexpression_cluster_id=C573 | ||
|description=CAGE_peak_7_at_SIX3_5end | |description=CAGE_peak_7_at_SIX3_5end | ||
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|ontology_enrichment_celltype=CL:0002322!1.81e-09!5;CL:0002586!6.66e-08!3;CL:0000064!9.04e-08!3;CL:0005012!9.04e-08!3;CL:0000067!9.04e-08!3;CL:0002304!9.04e-08!3;CL:0000075!2.55e-07!27 | |ontology_enrichment_celltype=CL:0002322!1.81e-09!5;CL:0002586!6.66e-08!3;CL:0000064!9.04e-08!3;CL:0005012!9.04e-08!3;CL:0000067!9.04e-08!3;CL:0002304!9.04e-08!3;CL:0000075!2.55e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002586;8.64e-19;3!CL:0000064;1.76e-18;3!CL:0000067;1.76e-18;3!CL:0005012;1.76e-18;3!CL:0002304;1.76e-18;3!CL:0000149;3.16e-14;4!CL:0000306;7.60e-14;4!CL:0002222;7.60e-14;4!CL:0002224;7.60e-14;4!CL:0000075;9.39e-10;27!CL:0000147;6.58e-07;14!CL:0000342;7.72e-07;1!CL:0002565;7.72e-07;1 | |ontology_enrichment_celltype_v019=CL:0002586;8.64e-19;3!CL:0000064;1.76e-18;3!CL:0000067;1.76e-18;3!CL:0005012;1.76e-18;3!CL:0002304;1.76e-18;3!CL:0000149;3.16e-14;4!CL:0000306;7.60e-14;4!CL:0002222;7.60e-14;4!CL:0002224;7.60e-14;4!CL:0000075;9.39e-10;27!CL:0000147;6.58e-07;14!CL:0000342;7.72e-07;1!CL:0002565;7.72e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002586,8.65e-19,3;CL:0000064,1.98e-18,3;CL:0000067,1.98e-18,3;CL:0005012,1.98e-18,3;CL:0002304,1.98e-18,3;CL:0000149,3.16e-14,4;CL:0000306,8.30e-14,4;CL:0002222,8.30e-14,4;CL:0002224,8.30e-14,4;CL:0000075,1.05e-09,27;CL:0000342,5.45e-07,1;CL:0002565,5.45e-07,1;CL:0000147,5.99e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.89e-18;3!UBERON:0010122;1.32e-12;2!UBERON:0006222;7.72e-07;1!UBERON:0005425;7.72e-07;1 | |ontology_enrichment_development_v019=UBERON:0003056;4.89e-18;3!UBERON:0010122;1.32e-12;2!UBERON:0006222;7.72e-07;1!UBERON:0005425;7.72e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;5.30e-07;4 | |ontology_enrichment_disease_v019=DOID:5409;5.30e-07;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,5.00e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0003056!3.79e-28!61;UBERON:0002346!9.55e-27!90;UBERON:0003075!2.67e-25!86;UBERON:0007284!2.67e-25!86;UBERON:0007625!1.07e-19!11;UBERON:0002104!1.58e-18!21;UBERON:0000970!6.92e-17!20;UBERON:0000073!7.27e-17!94;UBERON:0001016!7.27e-17!94;UBERON:0001032!1.09e-15!24;UBERON:0004456!1.09e-15!24;UBERON:0005743!1.21e-15!86;UBERON:0002780!1.54e-15!41;UBERON:0001890!1.54e-15!41;UBERON:0006240!1.54e-15!41;UBERON:0000924!2.71e-15!173;UBERON:0006601!2.71e-15!173;UBERON:0000019!3.72e-15!19;UBERON:0000047!3.72e-15!19;UBERON:0004088!3.72e-15!19;UBERON:0003072!3.72e-15!19;UBERON:0003071!3.72e-15!19;UBERON:0004128!3.72e-15!19;UBERON:0003080!4.85e-15!42;UBERON:0002616!5.90e-15!59;UBERON:0000020!3.43e-14!23;UBERON:0004121!3.53e-14!169;UBERON:0001456!2.17e-13!21;UBERON:0000033!3.32e-13!123;UBERON:0001049!5.60e-13!57;UBERON:0005068!5.60e-13!57;UBERON:0006241!5.60e-13!57;UBERON:0007135!5.60e-13!57;UBERON:0000955!8.42e-13!69;UBERON:0006238!8.42e-13!69;UBERON:0000153!3.93e-12!129;UBERON:0007811!3.93e-12!129;UBERON:0000966!5.30e-12!5;UBERON:0005388!5.30e-12!5;UBERON:0001802!5.30e-12!5;UBERON:0001017!1.15e-11!82;UBERON:0009663!4.25e-11!7;UBERON:0002420!6.24e-11!9;UBERON:0007245!6.24e-11!9;UBERON:0010009!6.24e-11!9;UBERON:0010011!6.24e-11!9;UBERON:0000454!6.24e-11!9;UBERON:0002308!6.34e-11!9;UBERON:0000125!6.34e-11!9;UBERON:0001894!1.96e-10!7;UBERON:0006222!1.96e-10!7;UBERON:0000488!1.04e-09!4;UBERON:0000369!1.32e-09!4;UBERON:0002435!1.32e-09!4;UBERON:0000204!1.32e-09!4;UBERON:0010082!1.32e-09!4;UBERON:0001893!4.18e-09!34;UBERON:0005085!8.39e-09!29;UBERON:0001869!1.66e-08!32;UBERON:0002791!2.86e-08!33;UBERON:0001781!6.66e-08!3;UBERON:0001782!6.66e-08!3;UBERON:0005424!6.66e-08!3;UBERON:0002020!7.27e-08!34;UBERON:0003528!7.27e-08!34;UBERON:0001778!9.04e-08!3;UBERON:0001775!9.04e-08!3;UBERON:0005383!9.65e-08!3;UBERON:0005382!9.65e-08!3;UBERON:0001801!3.73e-07!14 | |ontology_enrichment_uberon=UBERON:0003056!3.79e-28!61;UBERON:0002346!9.55e-27!90;UBERON:0003075!2.67e-25!86;UBERON:0007284!2.67e-25!86;UBERON:0007625!1.07e-19!11;UBERON:0002104!1.58e-18!21;UBERON:0000970!6.92e-17!20;UBERON:0000073!7.27e-17!94;UBERON:0001016!7.27e-17!94;UBERON:0001032!1.09e-15!24;UBERON:0004456!1.09e-15!24;UBERON:0005743!1.21e-15!86;UBERON:0002780!1.54e-15!41;UBERON:0001890!1.54e-15!41;UBERON:0006240!1.54e-15!41;UBERON:0000924!2.71e-15!173;UBERON:0006601!2.71e-15!173;UBERON:0000019!3.72e-15!19;UBERON:0000047!3.72e-15!19;UBERON:0004088!3.72e-15!19;UBERON:0003072!3.72e-15!19;UBERON:0003071!3.72e-15!19;UBERON:0004128!3.72e-15!19;UBERON:0003080!4.85e-15!42;UBERON:0002616!5.90e-15!59;UBERON:0000020!3.43e-14!23;UBERON:0004121!3.53e-14!169;UBERON:0001456!2.17e-13!21;UBERON:0000033!3.32e-13!123;UBERON:0001049!5.60e-13!57;UBERON:0005068!5.60e-13!57;UBERON:0006241!5.60e-13!57;UBERON:0007135!5.60e-13!57;UBERON:0000955!8.42e-13!69;UBERON:0006238!8.42e-13!69;UBERON:0000153!3.93e-12!129;UBERON:0007811!3.93e-12!129;UBERON:0000966!5.30e-12!5;UBERON:0005388!5.30e-12!5;UBERON:0001802!5.30e-12!5;UBERON:0001017!1.15e-11!82;UBERON:0009663!4.25e-11!7;UBERON:0002420!6.24e-11!9;UBERON:0007245!6.24e-11!9;UBERON:0010009!6.24e-11!9;UBERON:0010011!6.24e-11!9;UBERON:0000454!6.24e-11!9;UBERON:0002308!6.34e-11!9;UBERON:0000125!6.34e-11!9;UBERON:0001894!1.96e-10!7;UBERON:0006222!1.96e-10!7;UBERON:0000488!1.04e-09!4;UBERON:0000369!1.32e-09!4;UBERON:0002435!1.32e-09!4;UBERON:0000204!1.32e-09!4;UBERON:0010082!1.32e-09!4;UBERON:0001893!4.18e-09!34;UBERON:0005085!8.39e-09!29;UBERON:0001869!1.66e-08!32;UBERON:0002791!2.86e-08!33;UBERON:0001781!6.66e-08!3;UBERON:0001782!6.66e-08!3;UBERON:0005424!6.66e-08!3;UBERON:0002020!7.27e-08!34;UBERON:0003528!7.27e-08!34;UBERON:0001778!9.04e-08!3;UBERON:0001775!9.04e-08!3;UBERON:0005383!9.65e-08!3;UBERON:0005382!9.65e-08!3;UBERON:0001801!3.73e-07!14 | ||
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|short_description=p7@SIX3 | |short_description=p7@SIX3 | ||
}} | }} |
Latest revision as of 09:35, 17 September 2015
Short description: | p7@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SIX3_5end |
Coexpression cluster: | C573_Lens_small_retina_Ciliary_Retinal_eye_putamen |
Association with transcript: | -34bp_to_ENST00000260653_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 8.65e-19 | 3 |
ciliated cell | 1.98e-18 | 3 |
ciliated epithelial cell | 1.98e-18 | 3 |
multi-ciliated epithelial cell | 1.98e-18 | 3 |
non-pigmented ciliary epithelial cell | 1.98e-18 | 3 |
visual pigment cell | 3.16e-14 | 4 |
crystallin accumulating cell | 8.30e-14 | 4 |
vertebrate lens cell | 8.30e-14 | 4 |
lens epithelial cell | 8.30e-14 | 4 |
columnar/cuboidal epithelial cell | 1.05e-09 | 27 |
pigment cell (sensu Vertebrata) | 5.45e-07 | 1 |
iris pigment epithelial cell | 5.45e-07 | 1 |
pigment cell | 5.99e-07 | 14 |
Ontology term | p-value | n |
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