FFCP PHASE1:Hg19::chr1:155100342..155100359,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:155100342..155100359,+
|short_description=p1@EFNA1
|description=CAGE_peak_1_at_EFNA1_5end
|association_with_transcript=0bp_to_ENST00000368406,NM_004428,NM_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1942 | |EntrezGene=1942 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3221 | |HGNC=3221 | ||
|TSSclassifier=strong | |||
|UniProt=P20827 | |UniProt=P20827 | ||
|association_with_transcript=0bp_to_ENST00000368406,NM_004428,NM_182685,uc001fhh.2,uc001fhi.2_5end | |||
|cluster_id=chr1:155100342..155100359,+ | |||
|coexpression_cluster_id=C3876 | |||
|description=CAGE_peak_1_at_EFNA1_5end | |||
|id=chr1:155100342..155100359,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.18e-43!254;CL:0000223!3.17e-17!59;CL:0002076!4.50e-12!43;CL:0000076!2.94e-11!62;CL:0002139!3.43e-09!24;CL:0000115!1.52e-08!35;CL:0000213!5.56e-08!57;CL:0000215!5.56e-08!57;CL:0002078!6.05e-08!44 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.51e-10;42!CL:0002139;1.36e-09;24!CL:0000115;3.49e-08;36!CL:0002251;2.98e-07;20!CL:0000071;9.92e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.77e-45,253;CL:0000223,1.47e-18,58;CL:0002076,4.06e-13,42;CL:0000076,2.28e-11,63;CL:0002139,1.39e-09,24;CL:0000115,1.41e-09,36;CL:0002078,4.74e-09,45;CL:0000213,5.73e-09,58;CL:0000215,5.73e-09,58;CL:0002251,2.71e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;1.40e-10;58!UBERON:0008947;5.77e-09;29!UBERON:0006595;4.28e-08;86!CL:0002546;9.92e-07;18 | |||
|ontology_enrichment_disease=DOID:305!4.30e-20!106;DOID:0050687!5.89e-17!143;DOID:299!7.72e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:305;2.48e-07;106!DOID:299;4.57e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.14e-20,106;DOID:0050687,3.81e-17,143;DOID:299,4.13e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.11e-21!169;UBERON:0000925!1.11e-21!169;UBERON:0006595!1.11e-21!169;UBERON:0004921!2.76e-19!129;UBERON:0004185!2.76e-19!129;UBERON:0000477!5.04e-19!286;UBERON:0004111!9.96e-19!241;UBERON:0007023!2.20e-18!115;UBERON:0001007!6.82e-18!155;UBERON:0001555!6.82e-18!155;UBERON:0007026!6.82e-18!155;UBERON:0000077!2.05e-16!130;UBERON:0001041!2.98e-16!98;UBERON:0000064!6.25e-16!219;UBERON:0005177!1.73e-15!107;UBERON:0000025!8.70e-14!194;UBERON:0000062!3.42e-13!511;UBERON:0000481!9.35e-13!347;UBERON:0005911!9.28e-12!82;UBERON:0000468!1.01e-11!659;UBERON:0000922!2.21e-11!612;UBERON:0001004!2.29e-11!72;UBERON:0000483!3.14e-11!309;UBERON:0000119!1.01e-10!312;UBERON:0002050!1.34e-10!605;UBERON:0005423!1.34e-10!605;UBERON:0000466!1.75e-10!126;UBERON:0000923!2.31e-10!604;UBERON:0005291!2.31e-10!604;UBERON:0006598!2.31e-10!604;UBERON:0002532!2.31e-10!604;UBERON:0000467!4.63e-10!625;UBERON:0000480!5.52e-10!626;UBERON:0005172!1.19e-09!55;UBERON:0005173!1.19e-09!55;UBERON:0001049!1.24e-09!57;UBERON:0005068!1.24e-09!57;UBERON:0006241!1.24e-09!57;UBERON:0007135!1.24e-09!57;UBERON:0008947!1.24e-09!38;UBERON:0003258!1.24e-09!38;UBERON:0000065!1.41e-09!53;UBERON:0009569!2.14e-09!113;UBERON:0002365!8.15e-09!31;UBERON:0002330!8.15e-09!31;UBERON:0001017!2.08e-08!82;UBERON:0001048!2.16e-08!168;UBERON:0002530!2.34e-08!59;UBERON:0005743!3.01e-08!86;UBERON:0000955!4.91e-08!69;UBERON:0006238!4.91e-08!69;UBERON:0000924!5.40e-08!173;UBERON:0006601!5.40e-08!173;UBERON:0004121!7.00e-08!169;UBERON:0002616!8.18e-08!59;UBERON:0002346!9.92e-08!90;UBERON:0003075!1.10e-07!86;UBERON:0007284!1.10e-07!86;UBERON:0000153!1.23e-07!129;UBERON:0007811!1.23e-07!129;UBERON:0003080!1.78e-07!42;UBERON:0000033!1.93e-07!123;UBERON:0009497!4.26e-07!25;UBERON:0000015!4.26e-07!25;UBERON:0002423!4.26e-07!25;UBERON:0006235!4.26e-07!25;UBERON:0004161!4.26e-07!25;UBERON:0002780!5.06e-07!41;UBERON:0001890!5.06e-07!41;UBERON:0006240!5.06e-07!41;UBERON:0003929!5.52e-07!54;UBERON:0002417!7.17e-07!61;UBERON:0000916!7.17e-07!61;UBERON:0000073!7.78e-07!94;UBERON:0001016!7.78e-07!94;UBERON:0000072!8.19e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;6.62e-09;31!UBERON:0002330;6.62e-09;31!UBERON:0000065;5.86e-08;44!UBERON:0002423;3.16e-07;25!UBERON:0001737;6.35e-07;9!UBERON:0001557;6.35e-07;9!UBERON:0004638;9.92e-07;18!UBERON:0001986;9.92e-07;18!UBERON:0004852;9.92e-07;18 | |||
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| ||
|short_description=p1@EFNA1 | |||
}} | }} |
Latest revision as of 11:20, 17 September 2015
Short description: | p1@EFNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EFNA1_5end |
Coexpression cluster: | C3876_colon_liver_Hepatocyte_choriocarcinoma_chorionic_Renal_serous |
Association with transcript: | 0bp_to_ENST00000368406, NM_004428, NM_182685, uc001fhh.2, uc001fhi.2_5end |
EntrezGene: | EFNA1 |
HGNC: | 3221 |
UniProt: | P20827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.77e-45 | 253 |
endodermal cell | 1.47e-18 | 58 |
endo-epithelial cell | 4.06e-13 | 42 |
squamous epithelial cell | 2.28e-11 | 63 |
endothelial cell of vascular tree | 1.39e-09 | 24 |
endothelial cell | 1.41e-09 | 36 |
meso-epithelial cell | 4.74e-09 | 45 |
lining cell | 5.73e-09 | 58 |
barrier cell | 5.73e-09 | 58 |
epithelial cell of alimentary canal | 2.71e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.14e-20 | 106 |
cell type cancer | 3.81e-17 | 143 |
adenocarcinoma | 4.13e-07 | 25 |