FFCP PHASE1:Hg19::chr3:25470156..25470227,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:25470156..25470227,+ to FFCP PHASE1:Hg19::chr3:25470156..25470227,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5915 | |EntrezGene=5915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9865 | |HGNC=9865 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000462272,ENST00000479097,ENST00000480001,ENST00000489694_5end | |||
|cluster_id=chr3:25470156..25470227,+ | |||
|description=CAGE_peak_2_at_RARB_5end | |||
|id=chr3:25470156..25470227,+ | |||
|ontology_enrichment_celltype=CL:0000187!2.18e-15!54;CL:0000183!2.19e-15!59;CL:0000680!5.65e-14!57;CL:0000056!5.65e-14!57;CL:0000355!5.65e-14!57;CL:0000055!1.26e-13!180;CL:0000393!2.93e-12!60;CL:0000211!2.93e-12!60;CL:0000222!5.46e-12!119;CL:0000192!3.42e-11!42;CL:0000514!3.42e-11!42;CL:0000359!1.88e-10!32 | |||
|ontology_enrichment_celltype_v019=CL:0000187;2.04e-08;55!CL:0000359;4.44e-08;32!CL:0000393;1.65e-07;61!CL:0000211;1.65e-07;61!CL:0000192;2.61e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,7.06e-15,55;CL:0000680,2.54e-13,58;CL:0000056,2.54e-13,58;CL:0000355,2.54e-13,58;CL:0000393,6.06e-12,61;CL:0000211,6.06e-12,61;CL:0000222,1.15e-10,121;CL:0000192,5.90e-10,43;CL:0000514,5.90e-10,43;CL:0000359,1.51e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.96e-07;58!CL:0000514;2.61e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.38e-23!312;UBERON:0000483!1.42e-22!309;UBERON:0000477!4.88e-21!286;UBERON:0000481!3.08e-19!347;UBERON:0004111!3.28e-18!241;UBERON:0000025!2.12e-17!194;UBERON:0004872!8.48e-17!84;UBERON:0000475!5.83e-16!365;UBERON:0002049!7.67e-16!79;UBERON:0007798!7.67e-16!79;UBERON:0002385!1.74e-15!63;UBERON:0001015!1.74e-15!63;UBERON:0000383!1.74e-15!63;UBERON:0001134!7.05e-15!61;UBERON:0002036!7.05e-15!61;UBERON:0003082!7.05e-15!61;UBERON:0004290!1.49e-14!70;UBERON:0000490!2.61e-14!138;UBERON:0001009!1.27e-13!113;UBERON:0003914!1.43e-13!118;UBERON:0000914!3.77e-13!83;UBERON:0002329!3.77e-13!83;UBERON:0003077!3.77e-13!83;UBERON:0003059!3.77e-13!83;UBERON:0007282!3.77e-13!83;UBERON:0009618!3.77e-13!83;UBERON:0007285!3.77e-13!83;UBERON:0004535!5.37e-13!110;UBERON:0001981!5.42e-13!60;UBERON:0007500!5.42e-13!60;UBERON:0004537!5.42e-13!60;UBERON:0006965!5.42e-13!60;UBERON:0001637!9.33e-13!42;UBERON:0003509!9.33e-13!42;UBERON:0004572!9.33e-13!42;UBERON:0000055!7.63e-12!69;UBERON:0007023!1.04e-11!115;UBERON:0005256!2.39e-11!143;UBERON:0000486!2.59e-11!82;UBERON:0004573!2.43e-10!33;UBERON:0004571!2.43e-10!33;UBERON:0000468!4.33e-10!659;UBERON:0000467!6.66e-10!625;UBERON:0002100!9.50e-10!216;UBERON:0000480!9.64e-10!626;UBERON:0000922!3.42e-09!612;UBERON:0003075!3.85e-09!86;UBERON:0007284!3.85e-09!86;UBERON:0007100!7.02e-09!27;UBERON:0002050!9.93e-09!605;UBERON:0005423!9.93e-09!605;UBERON:0003104!1.03e-08!238;UBERON:0009142!1.03e-08!238;UBERON:0000923!2.08e-08!604;UBERON:0005291!2.08e-08!604;UBERON:0006598!2.08e-08!604;UBERON:0002532!2.08e-08!604;UBERON:0003056!2.33e-08!61;UBERON:0000948!2.74e-08!24;UBERON:0005498!2.74e-08!24;UBERON:0004140!2.74e-08!24;UBERON:0009881!2.74e-08!24;UBERON:0004141!2.74e-08!24;UBERON:0003084!2.74e-08!24;UBERON:0007005!2.74e-08!24;UBERON:0004139!2.74e-08!24;UBERON:0004291!2.74e-08!24;UBERON:0002346!7.16e-08!90;UBERON:0003103!2.32e-07!69;UBERON:0007625!4.77e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;8.75e-09;33!UBERON:0004571;8.75e-09;33!UBERON:0001637;1.28e-08;42!UBERON:0003509;1.28e-08;42!UBERON:0004572;1.28e-08;42!UBERON:0007100;2.12e-08;25!UBERON:0007625;2.54e-08;11!UBERON:0000948;1.07e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.14e-16,309;UBERON:0000483,9.89e-16,306;UBERON:0004872,4.96e-15,83;UBERON:0002385,1.39e-13,64;UBERON:0001015,1.39e-13,64;UBERON:0000383,1.39e-13,64;UBERON:0001134,1.96e-13,62;UBERON:0002036,1.96e-13,62;UBERON:0003082,1.96e-13,62;UBERON:0002049,2.68e-13,78;UBERON:0007798,2.68e-13,78;UBERON:0003077,1.12e-12,72;UBERON:0007285,1.12e-12,72;UBERON:0001009,1.60e-12,112;UBERON:0002329,1.67e-12,71;UBERON:0003059,1.67e-12,71;UBERON:0007282,1.67e-12,71;UBERON:0004290,1.67e-12,71;UBERON:0009618,1.67e-12,71;UBERON:0007524,2.81e-12,73;UBERON:0004111,4.17e-12,240;UBERON:0004535,7.97e-12,109;UBERON:0007503,1.07e-11,78;UBERON:0001637,1.88e-11,42;UBERON:0003509,1.88e-11,42;UBERON:0004572,1.88e-11,42;UBERON:0007500,2.86e-11,59;UBERON:0001981,2.86e-11,59;UBERON:0004537,2.86e-11,59;UBERON:0006965,2.86e-11,59;UBERON:0000490,3.39e-11,148;UBERON:0000025,7.38e-11,192;UBERON:0003104,1.09e-10,160;UBERON:0009142,1.09e-10,160;UBERON:0005256,2.47e-10,122;UBERON:0007023,5.51e-10,114;UBERON:0010314,8.97e-10,132;UBERON:0000486,1.14e-09,83;UBERON:0004573,1.19e-09,33;UBERON:0004571,1.19e-09,33;UBERON:0000055,1.66e-09,68;UBERON:0007100,2.15e-09,27;UBERON:0003914,2.98e-09,117;UBERON:0000948,1.15e-08,24;UBERON:0005498,1.15e-08,24;UBERON:0004140,1.15e-08,24;UBERON:0009881,1.15e-08,24;UBERON:0004141,1.15e-08,24;UBERON:0003084,1.15e-08,24;UBERON:0007005,1.15e-08,24;UBERON:0004139,1.15e-08,24;UBERON:0004291,1.15e-08,24;UBERON:0007625,2.05e-08,11;UBERON:0002100,6.73e-08,199;UBERON:0001048,7.14e-08,160;UBERON:0003056,1.30e-07,61;UBERON:0003103,5.37e-07,68;UBERON:0000923,7.89e-07,560;UBERON:0010316,7.89e-07,560;UBERON:0005291,7.89e-07,560;UBERON:0006598,7.89e-07,560;UBERON:0010317,7.89e-07,560;UBERON:0002532,7.89e-07,560;UBERON:0002050,7.94e-07,564;UBERON:0003075,9.57e-07,82;UBERON:0007284,9.57e-07,82 | |||
|phase1_expression=0.54503513781167,0,0.281908808191942,5.00366491765652,0.893922188854576,11.3404008133048,0,0,0,2.21160542851358,0.697801167972428,0,0,12.2528689430446,5.30235801164665,0.672325146451775,0.602694528023977,0,0.487932798790507,1.60057375499824,0.408001382488506,0.313454721478088,2.86235987131057,3.96935832711364,1.38096903554283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,5.36560687762909,4.60305222636709,1.0843174571537,0.50133791063589,1.59331170856906,0,0,17.9616152611729,13.747222642679,18.5331397812496,1.76821751921912,0,0,0,0,0,0,0,0,0.596287222100115,3.4409383804245,0,6.21838736116411,3.77549492588915,4.12677062910101,0.835979866147242,1.03366703667732,1.06729878806013,0.66944122552934,0,0.760272105718513,0,0,4.0507097394088,3.75058858793135,1.34717623575702,1.23872628531654,1.53316637465883,0.949265659568129,1.83201743930407,0,0,0,1.49091585508596,6.33152558322899,5.42877641334197,4.30254931123221,5.32002573297536,1.68203280042692,5.33744978648525,1.48000529050296,2.48968828319813,0.808264032418128,1.14423332179421,5.2975099675726,4.60940739583999,0.234321431833797,0,0.570471821544449,0,0,0.323745888736263,0.280901613404497,0,0.122834317311768,0,0,0.247266929278557,1.82032272387605,0.718618141816238,0.336672227908132,0.125118519871964,0,0.877955241761676,0.30648779579902,0.901428353439581,2.60894021268048,5.91985797773244,0.640672166455702,0.211931901159562,0,0,4.12224864073007,4.65292140828975,0,0.194874010322397,0.252433774244115,0.368199594569197,2.58633690910099,2.13005755509969,1.20902517873168,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0.252320850875628,0,6.25798129319264,12.2215778256648,6.90674606762403,3.25057549622385,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0.982827216677626,1.18157981336281,0,0,26.9361462168685,0,0,0,0,0,0,25.9796415645492,9.27443239800615,33.1092517745017,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,2.34434894420094,0,0.411309970813294,0,1.14330573052231,1.34557301214433,9.15516144549888,2.933531432838,1.80980402060889,0,0,1.86156681609409,0,0.514414748524284,0,0.266422179016099,0.714889968290738,0.542621605391443,0,0,0.710783897485092,0,18.0863626235752,12.2014684204041,12.3966509065751,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,35.8259155819888,9.00306937907419,0.813795071099207,9.98260135347874,3.39015078714607,1.10391690523754,5.15422225967938,0.601892199455438,0,2.0694614258501,2.65690239414175,0.737476674166813,0,1.17480694477644,1.71571711905428,0,0,0,0,0,0.30239029332968,0,2.455391572609,0,0.128139149255701,4.09365799253363,0,2.96836132889982,0.154209693802656,0,0.98552587216571,2.07701771673448,0.813472649219715,0,1.60405176242628,0,4.59257792658427,3.27764102412091,16.2594274549686,0,0.308061348417659,0,0,0.105551628892876,0,2.55140557914773,1.29549549661284,1.54227252690289,0.812839312631559,0,0,0,0.223874754722178,0,0,7.94995387860806,7.54433685109323,2.92840555197873,4.94596855909067,1.55668090191184,1.32015199872941,0,0,11.2478750890912,2.51343867559517,10.0131601124519,8.13569476048487,1.51620229732984,6.98231591643779,10.8762520435671,2.13066568540252,7.03353081609225,0,0,0,0,0.929691098594572,7.870308670766,4.1822236209636,8.93297382510658,2.12922412126809,1.73986598415015,4.633105477598,7.15624433709956,7.44316738719335,1.89827654831236,0.762520775695299,0,2.99557291623744,12.0917234211856,6.27958912159384,1.61885211824983,0.274537029736055,1.41374882814824,2.02182481573316,3.17020642346017,3.79132610615083,0,12.9168149504581,3.16950440270266,5.45999645631943,1.1312434556297,10.1707304958219,15.4382296192915,17.9128523315129,6.13831239355268,1.15755106853338,15.7414740491192,1.62328301570163,0.30982349809975,2.53526042279017,1.86434757865267,0.196498082026242,2.49669736036875,12.4166372424709,9.49984358839489,0.329294892959902,0,1.04980416073495,0,1.34060455107157,0,3.76575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20536194382929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.586032717087576,4.61169982648151,0,67.6244029399263,0,0,0,0,0,0,0,0,1.79323189425963,2.21027132424918,0,0.102268682502155,0,0,0.629078458031288,6.80280463767315,0,4.73488347057281,0,0,1.93866549219044,1.02044907978036,0,0,0,1.44999915086959,0,1.01701460117107,0,0,0,0,3.54296554325536,4.5826646677655,0,0,0,1.97446857438575,0,0,6.69467248983034,1.13942055847001,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,5.40971599355228,0.995261931078505,1.23840590304675,3.05515072466813,0,0,0,0.539209063845416,3.21031058919516,1.63985112007737,0,0.586993856796269,0,3.15667522279512,2.41981432097328,0.61214552326098,7.26645665727612,0.150323419414493,1.7626992537532,0,2.97892760287949,0,0,0,0.138674673013139,0,0,0,5.06707337901887,0.343972064943233,0,0,0,3.58859361007152,0,12.880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| ||
|short_description=p2@RARB | |||
}} | }} |
Latest revision as of 20:32, 17 September 2015
Short description: | p2@RARB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RARB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000462272, ENST00000479097, ENST00000480001, ENST00000489694_5end |
EntrezGene: | RARB |
HGNC: | 9865 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 7.06e-15 | 55 |
muscle precursor cell | 2.54e-13 | 58 |
myoblast | 2.54e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.54e-13 | 58 |
electrically responsive cell | 6.06e-12 | 61 |
electrically active cell | 6.06e-12 | 61 |
mesodermal cell | 1.15e-10 | 121 |
smooth muscle cell | 5.90e-10 | 43 |
smooth muscle myoblast | 5.90e-10 | 43 |
vascular associated smooth muscle cell | 1.51e-08 | 32 |