FFCP PHASE1:Hg19::chr8:31497452..31497463,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3084 | |EntrezGene=3084 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7997 | |HGNC=7997 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=181bp_to_ENST00000520407_5end | |association_with_transcript=181bp_to_ENST00000520407_5end | ||
|cluster_id=chr8:31497452..31497463,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_20_at_NRG1_5end | |description=CAGE_peak_20_at_NRG1_5end | ||
|id=chr8:31497452..31497463,+ | |id=chr8:31497452..31497463,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.89e-10;2!CL:0000153;4.09e-09;9!CL:0000447;4.09e-09;9!CL:0000214;2.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,4.09e-09,9;CL:0000447,4.09e-09,9;CL:0000214,2.19e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;8.95e-20;1!DOID:4549;8.95e-20;1!DOID:5861;8.95e-20;1!DOID:6496;8.95e-20;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,8.95e-20,1;DOID:4549,8.95e-20,1;DOID:5861,8.95e-20,1;DOID:6496,8.95e-20,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.38e-38!57;UBERON:0005068!1.38e-38!57;UBERON:0006241!1.38e-38!57;UBERON:0007135!1.38e-38!57;UBERON:0002616!4.54e-37!59;UBERON:0000073!8.90e-35!94;UBERON:0001016!8.90e-35!94;UBERON:0005743!4.34e-34!86;UBERON:0001017!1.03e-33!82;UBERON:0000955!1.08e-32!69;UBERON:0006238!1.08e-32!69;UBERON:0002780!2.65e-32!41;UBERON:0001890!2.65e-32!41;UBERON:0006240!2.65e-32!41;UBERON:0003080!1.99e-31!42;UBERON:0002346!5.17e-26!90;UBERON:0003075!2.26e-25!86;UBERON:0007284!2.26e-25!86;UBERON:0002020!4.11e-25!34;UBERON:0003528!4.11e-25!34;UBERON:0001869!2.17e-23!32;UBERON:0003056!2.83e-22!61;UBERON:0001893!7.81e-22!34;UBERON:0001950!8.94e-22!20;UBERON:0000956!3.32e-20!25;UBERON:0000203!3.32e-20!25;UBERON:0002791!9.36e-20!33;UBERON:0002619!1.19e-19!22;UBERON:0000924!5.28e-18!173;UBERON:0006601!5.28e-18!173;UBERON:0004121!2.69e-17!169;UBERON:0000033!6.94e-17!123;UBERON:0003296!7.14e-16!4;UBERON:0010133!7.14e-16!4;UBERON:0007023!8.09e-16!115;UBERON:0000153!8.66e-16!129;UBERON:0007811!8.66e-16!129;UBERON:0000200!4.67e-14!6;UBERON:0001894!1.54e-13!7;UBERON:0006222!1.54e-13!7;UBERON:0000988!3.59e-12!3;UBERON:0001872!9.53e-12!5;UBERON:0002298!1.15e-11!8;UBERON:0002771!9.28e-11!3;UBERON:0001871!9.42e-11!7;UBERON:0004733!1.15e-10!12;UBERON:0002028!1.15e-10!12;UBERON:0007277!1.15e-10!12;UBERON:0000025!3.22e-10!194;UBERON:0004732!8.61e-10!13;UBERON:0001905!4.78e-09!2;UBERON:0002757!4.78e-09!2;UBERON:0010134!4.78e-09!2;UBERON:0002784!4.78e-09!2;UBERON:0005408!4.78e-09!2;UBERON:0001899!4.78e-09!2;UBERON:0000007!1.55e-08!2;UBERON:0002148!1.74e-08!2;UBERON:0009662!1.74e-08!2;UBERON:0003076!2.15e-08!15;UBERON:0003057!2.15e-08!15;UBERON:0000477!3.76e-07!286;UBERON:0004111!6.91e-07!241;UBERON:0002680!8.01e-07!9;UBERON:0001895!8.01e-07!9;UBERON:0010092!8.01e-07!9;UBERON:0000064!9.96e-07!219 | |ontology_enrichment_uberon=UBERON:0001049!1.38e-38!57;UBERON:0005068!1.38e-38!57;UBERON:0006241!1.38e-38!57;UBERON:0007135!1.38e-38!57;UBERON:0002616!4.54e-37!59;UBERON:0000073!8.90e-35!94;UBERON:0001016!8.90e-35!94;UBERON:0005743!4.34e-34!86;UBERON:0001017!1.03e-33!82;UBERON:0000955!1.08e-32!69;UBERON:0006238!1.08e-32!69;UBERON:0002780!2.65e-32!41;UBERON:0001890!2.65e-32!41;UBERON:0006240!2.65e-32!41;UBERON:0003080!1.99e-31!42;UBERON:0002346!5.17e-26!90;UBERON:0003075!2.26e-25!86;UBERON:0007284!2.26e-25!86;UBERON:0002020!4.11e-25!34;UBERON:0003528!4.11e-25!34;UBERON:0001869!2.17e-23!32;UBERON:0003056!2.83e-22!61;UBERON:0001893!7.81e-22!34;UBERON:0001950!8.94e-22!20;UBERON:0000956!3.32e-20!25;UBERON:0000203!3.32e-20!25;UBERON:0002791!9.36e-20!33;UBERON:0002619!1.19e-19!22;UBERON:0000924!5.28e-18!173;UBERON:0006601!5.28e-18!173;UBERON:0004121!2.69e-17!169;UBERON:0000033!6.94e-17!123;UBERON:0003296!7.14e-16!4;UBERON:0010133!7.14e-16!4;UBERON:0007023!8.09e-16!115;UBERON:0000153!8.66e-16!129;UBERON:0007811!8.66e-16!129;UBERON:0000200!4.67e-14!6;UBERON:0001894!1.54e-13!7;UBERON:0006222!1.54e-13!7;UBERON:0000988!3.59e-12!3;UBERON:0001872!9.53e-12!5;UBERON:0002298!1.15e-11!8;UBERON:0002771!9.28e-11!3;UBERON:0001871!9.42e-11!7;UBERON:0004733!1.15e-10!12;UBERON:0002028!1.15e-10!12;UBERON:0007277!1.15e-10!12;UBERON:0000025!3.22e-10!194;UBERON:0004732!8.61e-10!13;UBERON:0001905!4.78e-09!2;UBERON:0002757!4.78e-09!2;UBERON:0010134!4.78e-09!2;UBERON:0002784!4.78e-09!2;UBERON:0005408!4.78e-09!2;UBERON:0001899!4.78e-09!2;UBERON:0000007!1.55e-08!2;UBERON:0002148!1.74e-08!2;UBERON:0009662!1.74e-08!2;UBERON:0003076!2.15e-08!15;UBERON:0003057!2.15e-08!15;UBERON:0000477!3.76e-07!286;UBERON:0004111!6.91e-07!241;UBERON:0002680!8.01e-07!9;UBERON:0001895!8.01e-07!9;UBERON:0010092!8.01e-07!9;UBERON:0000064!9.96e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;9.93e-41;4!UBERON:0010133;9.93e-41;4!UBERON:0001905;8.98e-37;2!UBERON:0002757;8.98e-37;2!UBERON:0010134;8.98e-37;2!UBERON:0005408;8.98e-37;2!UBERON:0001899;8.98e-37;2!UBERON:0001894;1.23e-23;7!UBERON:0002784;5.90e-19;4!UBERON:0000007;3.13e-10;2!UBERON:0002418;1.82e-07;3!UBERON:0004755;1.82e-07;3!UBERON:0006915;2.19e-07;3!UBERON:0007616;2.19e-07;3!UBERON:0002217;2.19e-07;3!UBERON:0002018;2.19e-07;3!UBERON:0000988;2.55e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,7.56e-41,4;UBERON:0010133,7.56e-41,4;UBERON:0001905,8.20e-37,2;UBERON:0002757,8.20e-37,2;UBERON:0010134,8.20e-37,2;UBERON:0005408,8.20e-37,2;UBERON:0001899,8.20e-37,2;UBERON:0001894,1.06e-23,7;UBERON:0006222,1.06e-23,7;UBERON:0002784,5.64e-19,4;UBERON:0000007,2.72e-10,2;UBERON:0001016,3.09e-09,89;UBERON:0000073,2.19e-08,53;UBERON:0002616,2.19e-08,53;UBERON:0001049,6.04e-08,56;UBERON:0005068,6.04e-08,56;UBERON:0006241,6.04e-08,56;UBERON:0007135,6.04e-08,56;UBERON:0001017,1.20e-07,81;UBERON:0002418,1.82e-07,3;UBERON:0004755,1.82e-07,3;UBERON:0006915,2.19e-07,3;UBERON:0007616,2.19e-07,3;UBERON:0002217,2.19e-07,3;UBERON:0002018,2.19e-07,3;UBERON:0000988,2.47e-07,3;UBERON:0002780,3.77e-07,41;UBERON:0001890,3.77e-07,41;UBERON:0003080,3.77e-07,41;UBERON:0006240,3.77e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04913549066956,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2982008315341,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,2.57392496792947,0,0.869767748958028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.332787154610557,0.496771223531068,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72519698234691,0.157265941855896,0,0,0.425149840203366,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0,0.0634158101939068,0.546974809018219,0,0,0,0,3.74991285114801,1.68141861109412,1.82089681270989,0.227662191351298,0,0,0,2.7867590520501,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,8.45391923973372,0,0,0,0,0,0,0,0,0,0.187967835959707,0.644578879735772,0,0,0,0,0,0,0,3.31320280605688,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264145302039678,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04913549066956,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0.344743373241465,0.874813840149763,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.91821828489147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2982008315341,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,2.57392496792947,0,0.869767748958028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0.332787154610557,0.496771223531068,0,0,0,0,0,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72519698234691,0.157265941855896,0,0,0.425149840203366,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,1.41696576325585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0,0.0634158101939068,0.546974809018219,0,0,0,0,3.74991285114801,1.68141861109412,1.82089681270989,0.227662191351298,0,0,0,2.7867590520501,0.197318320688547,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,8.45391923973372,0,0,0,0,0,0,0,0,0,0.187967835959707,0.644578879735772,0,0,0,0,0,0,0,3.31320280605688,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p20@NRG1 | |short_description=p20@NRG1 | ||
}} | }} |
Latest revision as of 00:15, 18 September 2015
Short description: | p20@NRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_NRG1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 181bp_to_ENST00000520407_5end |
EntrezGene: | NRG1 |
HGNC: | 7997 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 4.09e-09 | 9 |
carbohydrate secreting cell | 4.09e-09 | 9 |
synovial cell | 2.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 7.56e-41 | 4 |
neuroendocrine gland | 7.56e-41 | 4 |
pineal body | 8.20e-37 | 2 |
regional part of epithalamus | 8.20e-37 | 2 |
secretory circumventricular organ | 8.20e-37 | 2 |
circumventricular organ | 8.20e-37 | 2 |
epithalamus | 8.20e-37 | 2 |
diencephalon | 1.06e-23 | 7 |
future diencephalon | 1.06e-23 | 7 |
regional part of diencephalon | 5.64e-19 | 4 |
pituitary gland | 2.72e-10 | 2 |
nervous system | 3.09e-09 | 89 |
regional part of nervous system | 2.19e-08 | 53 |
regional part of brain | 2.19e-08 | 53 |
neural tube | 6.04e-08 | 56 |
neural rod | 6.04e-08 | 56 |
future spinal cord | 6.04e-08 | 56 |
neural keel | 6.04e-08 | 56 |
central nervous system | 1.20e-07 | 81 |
cartilage tissue | 1.82e-07 | 3 |
skeletal tissue | 1.82e-07 | 3 |
stratified squamous epithelium | 2.19e-07 | 3 |
layer of synovial tissue | 2.19e-07 | 3 |
synovial joint | 2.19e-07 | 3 |
synovial membrane of synovial joint | 2.19e-07 | 3 |
pons | 2.47e-07 | 3 |
regional part of forebrain | 3.77e-07 | 41 |
forebrain | 3.77e-07 | 41 |
anterior neural tube | 3.77e-07 | 41 |
future forebrain | 3.77e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 8.95e-20 | 1 |
extraosseous chondrosarcoma | 8.95e-20 | 1 |
myxoid chondrosarcoma | 8.95e-20 | 1 |
extraskeletal myxoid chondrosarcoma | 8.95e-20 | 1 |