FFCP PHASE1:Hg19::chr3:49907323..49907374,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:49907323..49907374,- to FFCP PHASE1:Hg19::chr3:49907323..49907374,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79012 | |EntrezGene=79012 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28788 | |HGNC=28788 | ||
|TSSclassifier=strong | |||
|UniProt=C9J9E2,B4DSW8,E7ETR1,B4DM24,C9JSB2,F8WDJ4,Q8NCB2 | |UniProt=C9J9E2,B4DSW8,E7ETR1,B4DM24,C9JSB2,F8WDJ4,Q8NCB2 | ||
|association_with_transcript=0bp_to_ENST00000296471,ENST00000463537,ENST00000466535,ENST00000466940,ENST00000467248,ENST00000475665,ENST00000476105,ENST00000479704,ENST00000480398,ENST00000487726,ENST00000488336,ENST00000498324,NM_024046,uc003cxt.1,uc003cxu.2,uc003cxv.1,uc003cxw.1,uc003cxx.1,uc011bcy.1,uc011bcz.1,uc011bda.1,uc011bdb.1_5end | |||
|cluster_id=chr3:49907323..49907374,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_CAMKV_5end | |||
|id=chr3:49907323..49907374,- | |||
|ontology_enrichment_celltype=CL:0002319!2.96e-10!25;CL:0000047!1.37e-08!8;CL:0000133!4.23e-07!59;CL:0000540!5.00e-07!6;CL:0000031!5.00e-07!6;CL:0000404!5.00e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;7.26e-10;6!CL:0000404;7.26e-10;6!CL:0002321;1.21e-08;15!CL:0002322;5.92e-08;5!CL:0000333;7.11e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.17e-12,8;CL:0000540,7.26e-10,6;CL:0000031,7.26e-10,6;CL:0000404,7.26e-10,6;CL:0002322,6.06e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.48e-16;82!CL:0000031;7.26e-10;6 | |||
|ontology_enrichment_disease=DOID:3095!1.08e-09!22;DOID:2994!1.08e-09!22;DOID:171!3.97e-09!10 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.99e-12;22!DOID:2994;7.99e-12;22!DOID:171;7.62e-11;10!DOID:169;7.98e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.89e-12,22;DOID:2994,7.89e-12,22;DOID:171,7.93e-11,10;DOID:169,8.47e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.36e-56!94;UBERON:0001016!2.36e-56!94;UBERON:0001017!1.56e-54!82;UBERON:0005743!6.81e-54!86;UBERON:0001049!5.93e-46!57;UBERON:0005068!5.93e-46!57;UBERON:0006241!5.93e-46!57;UBERON:0007135!5.93e-46!57;UBERON:0000955!1.70e-42!69;UBERON:0006238!1.70e-42!69;UBERON:0002780!4.86e-38!41;UBERON:0001890!4.86e-38!41;UBERON:0006240!4.86e-38!41;UBERON:0002616!8.73e-38!59;UBERON:0003080!9.86e-37!42;UBERON:0002346!1.72e-35!90;UBERON:0001893!1.23e-34!34;UBERON:0002020!1.73e-34!34;UBERON:0003528!1.73e-34!34;UBERON:0002791!1.28e-33!33;UBERON:0001869!2.35e-33!32;UBERON:0003075!1.26e-32!86;UBERON:0007284!1.26e-32!86;UBERON:0000924!2.91e-30!173;UBERON:0006601!2.91e-30!173;UBERON:0004121!7.54e-28!169;UBERON:0003056!2.83e-26!61;UBERON:0000956!6.64e-26!25;UBERON:0000203!6.64e-26!25;UBERON:0002619!9.69e-25!22;UBERON:0001950!1.23e-22!20;UBERON:0000033!4.07e-20!123;UBERON:0007023!3.62e-18!115;UBERON:0000153!4.00e-18!129;UBERON:0007811!4.00e-18!129;UBERON:0002420!2.13e-10!9;UBERON:0007245!2.13e-10!9;UBERON:0010009!2.13e-10!9;UBERON:0010011!2.13e-10!9;UBERON:0000454!2.13e-10!9;UBERON:0003076!2.93e-10!15;UBERON:0003057!2.93e-10!15;UBERON:0002308!6.08e-10!9;UBERON:0000125!6.08e-10!9;UBERON:0001871!2.30e-09!7;UBERON:0004732!1.82e-08!13;UBERON:0009663!2.60e-08!7;UBERON:0004733!8.06e-08!12;UBERON:0002028!8.06e-08!12;UBERON:0007277!8.06e-08!12;UBERON:0000200!1.23e-07!6;UBERON:0000025!6.11e-07!194;UBERON:0000349!7.32e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.42e-38;32!UBERON:0002619;7.82e-37;22!UBERON:0001893;1.28e-36;34!UBERON:0003528;1.56e-36;34!UBERON:0002020;1.56e-36;34!UBERON:0002791;6.49e-36;32!UBERON:0001950;1.26e-33;20!UBERON:0002780;1.58e-33;41!UBERON:0001890;1.58e-33;41!UBERON:0000956;1.29e-31;25!UBERON:0000203;1.29e-31;25!UBERON:0000073;1.41e-29;53!UBERON:0002616;1.41e-29;53!UBERON:0001016;5.35e-24;83!UBERON:0001017;8.17e-24;75!UBERON:0000955;9.77e-22;68!UBERON:0002420;1.52e-12;9!UBERON:0007245;1.52e-12;9!UBERON:0010009;1.52e-12;9!UBERON:0010011;1.52e-12;9!UBERON:0000454;1.52e-12;9!UBERON:0001871;5.53e-12;6!UBERON:0000125;6.43e-12;9!UBERON:0002308;6.43e-12;9!UBERON:0000922;5.38e-11;49!UBERON:0000200;8.72e-11;6!UBERON:0011216;6.25e-10;132!UBERON:0000349;1.29e-09;5!UBERON:0009663;1.96e-09;7!UBERON:0001872;2.29e-09;5!UBERON:0002021;2.58e-09;5!UBERON:0004732;4.89e-09;13!UBERON:0002298;1.52e-08;6!UBERON:0000369;2.43e-08;4!UBERON:0002435;2.43e-08;4!UBERON:0000204;2.43e-08;4!UBERON:0004733;4.02e-08;12!UBERON:0002028;4.02e-08;12!UBERON:0000013;7.11e-08;5!UBERON:0002410;7.11e-08;5!UBERON:0007023;7.77e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.32e-70,89;UBERON:0001017,2.47e-65,81;UBERON:0001049,1.40e-56,56;UBERON:0005068,1.40e-56,56;UBERON:0006241,1.40e-56,56;UBERON:0007135,1.40e-56,56;UBERON:0000073,1.50e-52,53;UBERON:0002616,1.50e-52,53;UBERON:0000955,5.04e-48,68;UBERON:0006238,5.04e-48,68;UBERON:0002780,4.70e-46,41;UBERON:0001890,4.70e-46,41;UBERON:0003080,4.70e-46,41;UBERON:0006240,4.70e-46,41;UBERON:0001869,9.82e-43,32;UBERON:0001893,2.02e-42,34;UBERON:0003528,3.22e-42,34;UBERON:0002020,3.22e-42,34;UBERON:0002346,2.62e-41,86;UBERON:0002791,1.24e-39,32;UBERON:0003075,9.71e-39,82;UBERON:0007284,9.71e-39,82;UBERON:0002619,8.53e-37,22;UBERON:0004121,1.51e-35,171;UBERON:0000924,1.51e-35,171;UBERON:0006601,1.51e-35,171;UBERON:0001950,1.38e-33,20;UBERON:0003056,2.83e-32,61;UBERON:0000956,1.39e-31,25;UBERON:0000203,1.39e-31,25;UBERON:0010371,4.24e-31,104;UBERON:0011216,2.81e-28,223;UBERON:0007023,3.35e-22,114;UBERON:0010314,4.53e-20,132;UBERON:0002420,1.52e-12,9;UBERON:0007245,1.52e-12,9;UBERON:0010009,1.52e-12,9;UBERON:0010011,1.52e-12,9;UBERON:0000454,1.52e-12,9;UBERON:0001871,6.01e-12,6;UBERON:0000125,6.43e-12,9;UBERON:0002308,6.43e-12,9;UBERON:0003076,1.24e-11,15;UBERON:0003057,1.24e-11,15;UBERON:0000200,8.73e-11,6;UBERON:0000349,1.29e-09,5;UBERON:0009663,1.96e-09,7;UBERON:0001872,2.29e-09,5;UBERON:0002021,2.58e-09,5;UBERON:0000025,4.35e-09,192;UBERON:0004732,4.37e-09,13;UBERON:0002298,1.59e-08,6;UBERON:0000369,2.43e-08,4;UBERON:0002435,2.43e-08,4;UBERON:0000204,2.43e-08,4;UBERON:0010082,2.43e-08,4;UBERON:0004733,3.73e-08,12;UBERON:0002028,3.73e-08,12;UBERON:0007277,3.73e-08,12;UBERON:0000013,7.16e-08,5;UBERON:0002410,7.16e-08,5;UBERON:0000922,4.63e-07,592 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0,0.626909442956176,0.572471974262113,0.547497700291537,0.376627918784408,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0.755751887377619,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,3.96513985737078,0.560508562981536,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,26.1958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.1265834626967,37.7709839716233,22.3092370309475,11.5063771067061,19.4287055174234,67.8857887881044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.54473944008842,5.29755719297581,2.82873408649161,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0.383382679165211,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,3.04913549066956,52.0559415430487,60.3165273966602,54.777818764332,60.6041814070505,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.95523743325651,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0,0,0.183138929636687,0.165018999841176,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,1.28188885352968,0,0,0.557409525377156,0.432807638929335,0,3.02909918184762,0,0,0,0,0,3.65175486453108,0.156679895773023,0,0,0,0,6.81353980304522,1.37402137902306,0.614481528616916,1.11838053946208,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0.36408156524854,0,0,0,0,0,251.519354884873,158.815771127469,0,0,1.47787785689595,0.19924798825107,0,30.2319297425131,0,0.246169610922139,0,0,0,0,0,0,0,202.590543933901,137.389553377702,481.069253182878,0,0,0,0.1137934482855,0,0,28.2689566058001,82.524105587461,13.5427496047968,267.493898515779,363.115876701103,1.52581736317083,4.31259113731776,2.95547618953547,193.717305686958,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35357396370308,0.392125068635479,0.167821586975843,0.75901493089674,0,0,0,9.89471500037586,2.59666367690509,0,0.176915129006678,0,0,0,0,17.8613002398794,0,193.50243216913,0.91227394607833,0,0,0,1.20990716048664,295.972360496684,2.71702292402498,1.80388103297391,1.03688191397247,1.32930774541437,1.323967823502,0.627865836814451,2.38944859545918,1.42304773014896,0.277349346026277,0,0,0,0,0,0,0,0,0.0969890164884194,8.38433203569253,14.2367866691735,0,0,164.228204709549,0.195551382734803,0,0.426905989478705,0.999048047910651,0.432271251462318,0.114536596165916,8.06496489951233,0,0.124252535565433,0,0.135904206073614,0.104602846312333,0,0.288950589901519,186.130289500035,27.3810757783986,1.27746588066972,0,0,0,0,0,0,0,0,0.134366944973453,0,1.16495949527454,0.236349546921671,0.164831716762333,0.26961417541674,0,0,333.996469719907,114.683267945947,38.5807556316046,35.0725563322946,42.3749144789769,0,0.77380195455795,221.553633131816,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0.164185041498678,0,0.113312091520126,0,0,20.0388582360403,21.1572162788304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,165.694749653826,230.62964066471,110.418400883133,3.44045517414043,3.21694249456872,9.62494245591443,22.8275247644781,0.624902039810533,0,2.85465333544967,0.235265819698172,7.02502358710322,18.5498916621856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,113.786692952874,0,0,0,0.655219697692825,0,0,0,5.2278947550129,0,0,0,0,0.622077260032973,129.301209387992,45.9333696549864,2.51625506969434,64.6521058096722,8.14716143779321,23.8083910513885,0.991486114072017,3.91051442581271,0,0,5.60399523799829,0,0,249.915914850324,128.943884456282,72.6334058710038,151.170760445436,263.414922551695,170.472627324297,181.337150044569,2.85538840518309,0,3.18518253038899,0,0,0,0,2.98374333174412,0,0,0,0,0,0,118.325848251427,153.091307328314,111.610870110639,130.50973737906,306.305893050203,0,0,3.51742488719241,0,0.535701835878287,0,3.03482802118316,2.73194629621557,0,0,0,10.1274902135479,159.630521437035,0,0.111231401892069,0,554.303801223655,0.280272163313789,2.73947616152849,0,0,4.00268647389276,68.2618802685379,0.116241425368125,0.173858272302579,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,10.5272758557948,57.8946755719582,0.594600453887843,0.5647304101948,59.2579385257863,3.32118255846682,0.231522474323834,13.7692523117493,0,0,2.59244201811789,25.5201007249429,10.6936704117751,40.9976055755898,0,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| ||
|short_description=p1@CAMKV | |||
}} | }} |
Latest revision as of 17:42, 18 September 2015
Short description: | p1@CAMKV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAMKV_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000296471, ENST00000463537, ENST00000466535, ENST00000466940, ENST00000467248, ENST00000475665, ENST00000476105, ENST00000479704, ENST00000480398, ENST00000487726, ENST00000488336, ENST00000498324, NM_024046, uc003cxt.1, uc003cxu.2, uc003cxv.1, uc003cxw.1, uc003cxx.1, uc011bcy.1, uc011bcz.1, uc011bda.1, uc011bdb.1_5end |
EntrezGene: | CAMKV |
HGNC: | 28788 |
UniProt: | C9J9E2B4DSW8E7ETR1B4DM24C9JSB2F8WDJ4Q8NCB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.17e-12 | 8 |
neuron | 7.26e-10 | 6 |
neuroblast | 7.26e-10 | 6 |
electrically signaling cell | 7.26e-10 | 6 |
embryonic stem cell | 6.06e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.89e-12 | 22 |
germ cell cancer | 7.89e-12 | 22 |
neuroectodermal tumor | 7.93e-11 | 10 |
neuroendocrine tumor | 8.47e-09 | 6 |