FFCP PHASE1:Hg19::chr3:5229204..5229231,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9695 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18967 | |||
|TSSclassifier=strong | |||
|UniProt=B4DPV5,F8WER9 | |||
|association_with_transcript=-99bp_to_ENST00000419550,ENST00000434243,uc011asz.1_5end | |||
|cluster_id=chr3:5229204..5229231,+ | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_6_at_EDEM1_5end | |||
|id=chr3:5229204..5229231,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.54e-12!53;CL:0000051!3.54e-12!53;CL:0000838!4.09e-12!52;CL:0000084!7.30e-12!25;CL:0000827!7.30e-12!25;CL:0000791!4.37e-09!18;CL:0000789!4.37e-09!18;CL:0002420!4.37e-09!18;CL:0002419!4.37e-09!18;CL:0000790!4.37e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;8.29e-17;25!CL:0000791;3.75e-16;18!CL:0000789;3.75e-16;18!CL:0002419;3.75e-16;18!CL:0000625;1.15e-10;11!CL:0002322;6.60e-09;5!CL:0002321;8.43e-09;15!CL:0000540;1.94e-08;6!CL:0000404;1.94e-08;6!CL:0000624;2.41e-08;6!CL:0000333;6.07e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.52e-17,25;CL:0000827,3.52e-17,25;CL:0000791,1.84e-16,18;CL:0000789,1.84e-16,18;CL:0002420,1.84e-16,18;CL:0002419,1.84e-16,18;CL:0000790,1.84e-16,18;CL:0000625,9.03e-11,11;CL:0000047,5.73e-09,8;CL:0002322,8.96e-09,5;CL:0000624,1.37e-08,6;CL:0000540,1.93e-08,6;CL:0000031,1.93e-08,6;CL:0000404,1.93e-08,6;CL:0000838,5.07e-07,52;CL:0000542,8.20e-07,53;CL:0000051,8.20e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;3.75e-16;18!CL:0000031;1.94e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!4.88e-07!22;DOID:2994!4.88e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:171;2.08e-12;10!DOID:3095;3.71e-11;22!DOID:2994;3.71e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.74e-12,10;DOID:3095,3.31e-11,22;DOID:2994,3.31e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!7.71e-20!82;UBERON:0000073!1.37e-19!94;UBERON:0001016!1.37e-19!94;UBERON:0007023!3.57e-19!115;UBERON:0005743!1.44e-18!86;UBERON:0002780!1.62e-18!41;UBERON:0001890!1.62e-18!41;UBERON:0006240!1.62e-18!41;UBERON:0001049!3.40e-18!57;UBERON:0005068!3.40e-18!57;UBERON:0006241!3.40e-18!57;UBERON:0007135!3.40e-18!57;UBERON:0003080!1.17e-17!42;UBERON:0002020!5.78e-17!34;UBERON:0003528!5.78e-17!34;UBERON:0001893!8.44e-17!34;UBERON:0001869!9.03e-17!32;UBERON:0002791!3.39e-16!33;UBERON:0000955!3.71e-16!69;UBERON:0006238!3.71e-16!69;UBERON:0002616!4.69e-16!59;UBERON:0002619!6.27e-16!22;UBERON:0000956!7.47e-15!25;UBERON:0000203!7.47e-15!25;UBERON:0001950!1.08e-14!20;UBERON:0002346!7.78e-13!90;UBERON:0003056!5.53e-11!61;UBERON:0003075!7.18e-11!86;UBERON:0007284!7.18e-11!86;UBERON:0000153!4.18e-08!129;UBERON:0007811!4.18e-08!129;UBERON:0000924!4.65e-08!173;UBERON:0006601!4.65e-08!173;UBERON:0000033!8.48e-07!123;UBERON:0004121!8.55e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.19e-36;22!UBERON:0001950;1.12e-32;20!UBERON:0000956;4.48e-31;25!UBERON:0000203;4.48e-31;25!UBERON:0001869;8.98e-30;32!UBERON:0002791;1.00e-27;32!UBERON:0003528;7.47e-27;34!UBERON:0002020;7.47e-27;34!UBERON:0001893;2.07e-26;34!UBERON:0002780;6.35e-23;41!UBERON:0001890;6.35e-23;41!UBERON:0000073;2.69e-18;53!UBERON:0002616;2.69e-18;53!UBERON:0000955;6.16e-12;68!UBERON:0000200;6.99e-11;6!UBERON:0001016;1.72e-10;83!UBERON:0001017;2.05e-10;75!UBERON:0001872;8.54e-10;5!UBERON:0002021;1.05e-09;5!UBERON:0001871;1.21e-09;6!UBERON:0002346;6.68e-09;4!UBERON:0000923;6.68e-09;4!UBERON:0010316;6.68e-09;4!UBERON:0005291;6.68e-09;4!UBERON:0000922;3.40e-07;49!UBERON:0002050;4.33e-07;5!UBERON:0005423;4.33e-07;5!UBERON:0000013;6.07e-07;5!UBERON:0002410;6.07e-07;5!UBERON:0001870;6.19e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.00e-35,22;UBERON:0001869,4.78e-33,32;UBERON:0001016,3.14e-32,89;UBERON:0001950,4.51e-32,20;UBERON:0000073,1.39e-31,53;UBERON:0002616,1.39e-31,53;UBERON:0002780,6.15e-31,41;UBERON:0001890,6.15e-31,41;UBERON:0003080,6.15e-31,41;UBERON:0006240,6.15e-31,41;UBERON:0001893,1.06e-30,34;UBERON:0003528,1.60e-30,34;UBERON:0002020,1.60e-30,34;UBERON:0000956,2.07e-30,25;UBERON:0000203,2.07e-30,25;UBERON:0002791,2.38e-30,32;UBERON:0001017,1.39e-29,81;UBERON:0001049,2.20e-29,56;UBERON:0005068,2.20e-29,56;UBERON:0006241,2.20e-29,56;UBERON:0007135,2.20e-29,56;UBERON:0000955,1.84e-25,68;UBERON:0006238,1.84e-25,68;UBERON:0002346,9.18e-23,86;UBERON:0003056,1.38e-19,61;UBERON:0003075,2.81e-18,82;UBERON:0007284,2.81e-18,82;UBERON:0004121,3.90e-16,171;UBERON:0000924,3.90e-16,171;UBERON:0006601,3.90e-16,171;UBERON:0007023,1.16e-15,114;UBERON:0010371,1.97e-13,104;UBERON:0000200,4.91e-11,6;UBERON:0001872,9.48e-10,5;UBERON:0002021,1.58e-09,5;UBERON:0001871,1.66e-09,6;UBERON:0010314,2.29e-09,132;UBERON:0011216,8.86e-09,223;UBERON:0000013,6.21e-07,5;UBERON:0002410,6.21e-07,5;UBERON:0001870,8.41e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0.125542639594803,0.229240217243854,0.492603536699674,0.0787107813136792,0,0,0.309632246632152,0,0,0,0.46480320348181,0.568676929949686,0.293600439334847,0,0.200544447470142,0.434021741431704,0,0,0,0,0.755751887377619,0,0,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0,0.344745680736619,1.29096936716765,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0.521482918420201,0.434377689410233,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0.574752439954483,0.661044872784862,0,0,0,0.764546456250458,0,0,0.263384084775077,4.72103448273199,4.71612915298998,1.85041349099558,0.167186495390678,2.93330039970231,0.946895611469467,3.89653456815823,0.222820913770347,0.883817722424512,0,0.812411591295047,0.768547918354051,0.520237390239513,0.164437904603676,0.276350017785848,0.869409257205157,5.6348894001583,4.28065324943541,7.31748666634838,0.453237370790265,1.53288197440768,1.03088233644789,1.01207876807801,3.18565414324097,1.30216690771284,2.85135613334512,2.71035214339991,2.43174561193395,0,2.8413270245282,2.46338399076314,0.403213486449465,0,3.04131248153878,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0.263504357079378,1.17881167947941,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.17859945656816,0.22452937262617,0.225222960966644,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95157929807353,1.06023814657188,1.2781333715647,1.24393266018445,2.27088765788066,1.82488679537915,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,5.29755719297581,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0.44024217006613,0.414656231081544,0,0.25248486685276,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0,0,0,0,0,0,2.83698264046557,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.394061520403854,1.94064817373566,0.898401253958239,0,5.20559415430487,3.09315525111078,3.35032530668698,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0.195801157462741,0,2.89475236572042,0.862856803274467,0.74709290462411,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.246381468041427,0,0,0,0,0.460404944679482,0,0.182091168006717,0,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0,0,0.206082023295445,0.27470839445503,0.165018999841176,0,0,0,0.193341436584244,0.154048617114644,0,0,0.214840489736547,0.145016693914229,0,0.0890320356467374,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,1.04980416073495,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0.764637207142375,1.13929437434833,2.1440859791201,0.411362273086194,1.29694662238543,0.540031437238115,2.37937552888281,0,0,0,0.185803175125719,0.721346064882224,1.70740424036194,2.8696729091188,0.798317485731266,0,0,0.324621940274555,0,0,0.156679895773023,0,0.169291777801603,0,0,0,0.343505344755765,0.614481528616916,0.223676107892416,0.333698283423817,0.19538809540204,0,1.23087398947712,0.270455678475983,0.66614393599564,0,0,0,0.485442086998054,0.780103689942349,0,0.23874448473769,0,0,0.994147647766298,2.11004124615769,0.111308705022906,0.16480387422676,0.211125408127993,0.597743964753209,0.828851746593443,0.251932747854276,0.102268682502155,0.369254416383208,0,0,0.179021174675609,0,0.0986434056369336,2.3948309234694,0,0,1.57705766875147,3.99227596002388,0,0.0874599999961957,0,0,0,0.236387681767936,0.344743373241465,4.08246458736556,0.520874984799877,0.885741385813839,2.77371808838438,0,3.42795705786796,1.77328571372128,0.87754158861589,0.21787692703798,0,0.230850775511391,0.113942055847001,2.3056390438806,0.897576444097721,0,0,0,0,5.10966490978682,0.156980256395025,0,0,0.19606253431774,0.335643173951685,0.37950746544837,0.158936578980379,0,0,0.282706142867882,0.216388639742091,0,0.0884575645033392,0,0,0,0,0.337005664903385,0,1.63985112007737,0.91227394607833,0,0.485560759068186,0,3.62972148145992,2.14250933141343,0.063186579628488,0.901940516486955,0.311064574191741,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0.19351266257817,0.0730893170861856,0.0821154570532092,0.0969890164884194,0.0882561266915003,0.90392296312213,0.137041924646751,0,3.10222900183806,0.195551382734803,0.0801588202515337,0,0.19980960958213,0.144090417154106,0.114536596165916,0.343189995723929,0,0.124252535565433,0,0,0.209205692624666,0.101998217636322,0,0,0.136905378891993,0,0,0.262887354279314,0.279282401272254,0,0,0.199679000498991,0,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| |||
|short_description=p6@EDEM1 | |||
}} |
Latest revision as of 23:07, 18 September 2015
Short description: | p6@EDEM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_EDEM1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -99bp_to_ENST00000419550, ENST00000434243, uc011asz.1_5end |
EntrezGene: | EDEM1 |
HGNC: | 18967 |
UniProt: | B4DPV5F8WER9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.52e-17 | 25 |
pro-T cell | 3.52e-17 | 25 |
mature alpha-beta T cell | 1.84e-16 | 18 |
alpha-beta T cell | 1.84e-16 | 18 |
immature T cell | 1.84e-16 | 18 |
mature T cell | 1.84e-16 | 18 |
immature alpha-beta T cell | 1.84e-16 | 18 |
CD8-positive, alpha-beta T cell | 9.03e-11 | 11 |
neuronal stem cell | 5.73e-09 | 8 |
embryonic stem cell | 8.96e-09 | 5 |
CD4-positive, alpha-beta T cell | 1.37e-08 | 6 |
neuron | 1.93e-08 | 6 |
neuroblast | 1.93e-08 | 6 |
electrically signaling cell | 1.93e-08 | 6 |
lymphoid lineage restricted progenitor cell | 5.07e-07 | 52 |
lymphocyte | 8.20e-07 | 53 |
common lymphoid progenitor | 8.20e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.74e-12 | 10 |
germ cell and embryonal cancer | 3.31e-11 | 22 |
germ cell cancer | 3.31e-11 | 22 |