FFCP PHASE1:Mm9::chr15:100701326..100701340,+: Difference between revisions
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{{FFCP|EntrezGene=20273|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-117bp_to_uc007xsi.1_5end|description=CAGE_peak_4_at_Scn8a_5end|id=chr15:100701326..100701340,+|ontology_enrichment_celltype=CL:0000117!9.40e-18!23;CL:0000337!9.40e-18!23;CL:0000540!4.81e-10!33;CL:0000047!4.81e-10!33;CL:0000031!4.81e-10!33;CL:0000404!4.81e-10!33;CL:0000393!1.97e-07!39;CL:0000211!1.97e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,8.35e-16,23;CL:0000337,8.35e-16,23;CL:0000540,4.72e-10,33;CL:0000047,4.72e-10,33;CL:0000031,4.72e-10,33;CL:0000404,4.72e-10,33;CL:0002610,4.09e-08,3;CL:0000393,4.91e-08,39;CL:0000211,4.91e-08,39;CL:0002614,2.52e-07,3;CL:0002319,5.20e-07,43;CL:0002612,5.86e-07,3;CL:0000221,8.75e-07,44;CL:0000133,8.75e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.60e-28!52;UBERON:0005068!4.60e-28!52;UBERON:0006241!4.60e-28!52;UBERON:0007135!4.60e-28!52;UBERON:0000955!2.35e-26!50;UBERON:0006238!2.35e-26!50;UBERON:0002020!7.11e-26!34;UBERON:0002616!1.67e-25!49;UBERON:0000033!6.06e-25!63;UBERON:0002346!6.17e-25!71;UBERON:0003075!6.17e-25!71;UBERON:0007284!6.17e-25!71;UBERON:0001017!1.99e-24!73;UBERON:0005743!1.99e-24!73;UBERON:0000073!3.17e-24!75;UBERON:0001016!3.17e-24!75;UBERON:0003056!1.02e-21!49;UBERON:0002791!4.02e-21!29;UBERON:0003528!4.02e-21!29;UBERON:0001893!4.02e-21!29;UBERON:0003080!2.01e-20!40;UBERON:0004121!7.27e-20!102;UBERON:0000924!7.27e-20!102;UBERON:0006601!7.27e-20!102;UBERON:0002780!1.39e-19!39;UBERON:0001890!1.39e-19!39;UBERON:0006240!1.39e-19!39;UBERON:0007811!1.13e-14!86;UBERON:0000956!2.44e-14!21;UBERON:0001869!2.44e-14!21;UBERON:0000203!2.44e-14!21;UBERON:0000153!1.58e-13!94;UBERON:0002021!3.18e-12!10;UBERON:0000411!3.18e-12!10;UBERON:0001950!3.18e-12!10;UBERON:0002619!1.61e-11!17;UBERON:0003076!4.35e-08!12;UBERON:0003057!4.35e-08!12;UBERON:0002420!5.16e-08!8;UBERON:0007245!5.16e-08!8;UBERON:0010009!5.16e-08!8;UBERON:0010011!5.16e-08!8;UBERON:0000454!5.16e-08!8;UBERON:0002240!6.62e-07!6;UBERON:0005174!6.62e-07!6;UBERON:0001137!6.62e-07!6;UBERON:0002298!7.10e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.95e-43,54;UBERON:0001049,1.53e-38,52;UBERON:0005068,1.53e-38,52;UBERON:0006241,1.53e-38,52;UBERON:0007135,1.53e-38,52;UBERON:0001017,5.35e-38,73;UBERON:0001016,8.94e-37,75;UBERON:0002020,3.22e-34,34;UBERON:0002346,6.08e-30,64;UBERON:0003075,6.08e-30,64;UBERON:0007284,6.08e-30,64;UBERON:0000955,1.31e-29,47;UBERON:0006238,1.31e-29,47;UBERON:0002616,4.25e-28,46;UBERON:0004121,2.27e-27,95;UBERON:0000924,2.27e-27,95;UBERON:0006601,2.27e-27,95;UBERON:0010371,2.40e-25,73;UBERON:0003528,3.30e-25,29;UBERON:0002791,3.30e-25,29;UBERON:0001893,3.30e-25,29;UBERON:0002021,4.94e-24,10;UBERON:0000411,4.94e-24,10;UBERON:0001950,4.94e-24,10;UBERON:0003080,3.20e-23,40;UBERON:0002780,9.62e-22,39;UBERON:0001890,9.62e-22,39;UBERON:0006240,9.62e-22,39;UBERON:0002619,8.29e-19,17;UBERON:0010314,1.37e-18,92;UBERON:0003056,6.02e-18,49;UBERON:0000956,2.63e-17,21;UBERON:0001869,2.63e-17,21;UBERON:0000203,2.63e-17,21;UBERON:0003076,2.14e-16,12;UBERON:0003057,2.14e-16,12;UBERON:0000025,1.39e-13,114;UBERON:0002240,7.84e-13,6;UBERON:0005174,7.84e-13,6;UBERON:0001137,7.84e-13,6;UBERON:0004111,3.28e-12,122;UBERON:0001948,7.60e-11,5;UBERON:0002315,7.60e-11,5;UBERON:0011216,2.88e-09,194;UBERON:0002420,5.14e-09,8;UBERON:0007245,5.14e-09,8;UBERON:0010009,5.14e-09,8;UBERON:0010011,5.14e-09,8;UBERON:0000454,5.14e-09,8;UBERON:0002950,5.20e-09,4;UBERON:0001891,5.20e-09,4;UBERON:0009616,5.20e-09,4;UBERON:0010286,5.20e-09,4;UBERON:0004684,4.09e-08,3;UBERON:0002275,4.09e-08,3;UBERON:0002038,2.52e-07,3;UBERON:0009663,2.52e-07,3;UBERON:0009661,2.52e-07,3;UBERON:0000125,2.52e-07,3;UBERON:0002308,2.52e-07,3;UBERON:0002257,5.86e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.405017814995072,0.420649922702764,7.14127461009509,3.97563373712904,0.734944795289724,0.287536413054709,0,7.70811166995721,12.257984456178,7.0659005297872,0.923204014111357,0.914876436024097,2.08365348222704,5.862842979029,4.50210088025344,4.5839474333043,5.30331453852602,3.27454865837937,2.05039390407831,0,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,2.63502717310392,2.72280718857492,0.255457055208591,0,0,0,2.54644086988199,3.20250421973039,1.00523481690292,6.60532416730651,6.13717097592793,3.32460871295296,4.54275536589721,0,0,0,0,0.130120442962704,0,0,0.30140963567143,0.544291993210623,0.384341160854549,0.281105173679186,0.776110112217047,0,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9350773253346,1.02904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.126473074248515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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20273 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-117bp_to_uc007xsi.1_5end | |||
|cluster_id=chr15:100701326..100701340,+ | |||
|description=CAGE_peak_4_at_Scn8a_5end | |||
|id=chr15:100701326..100701340,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.40e-18!23;CL:0000337!9.40e-18!23;CL:0000540!4.81e-10!33;CL:0000047!4.81e-10!33;CL:0000031!4.81e-10!33;CL:0000404!4.81e-10!33;CL:0000393!1.97e-07!39;CL:0000211!1.97e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.35e-16,23;CL:0000337,8.35e-16,23;CL:0000540,4.72e-10,33;CL:0000047,4.72e-10,33;CL:0000031,4.72e-10,33;CL:0000404,4.72e-10,33;CL:0002610,4.09e-08,3;CL:0000393,4.91e-08,39;CL:0000211,4.91e-08,39;CL:0002614,2.52e-07,3;CL:0002319,5.20e-07,43;CL:0002612,5.86e-07,3;CL:0000221,8.75e-07,44;CL:0000133,8.75e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.60e-28!52;UBERON:0005068!4.60e-28!52;UBERON:0006241!4.60e-28!52;UBERON:0007135!4.60e-28!52;UBERON:0000955!2.35e-26!50;UBERON:0006238!2.35e-26!50;UBERON:0002020!7.11e-26!34;UBERON:0002616!1.67e-25!49;UBERON:0000033!6.06e-25!63;UBERON:0002346!6.17e-25!71;UBERON:0003075!6.17e-25!71;UBERON:0007284!6.17e-25!71;UBERON:0001017!1.99e-24!73;UBERON:0005743!1.99e-24!73;UBERON:0000073!3.17e-24!75;UBERON:0001016!3.17e-24!75;UBERON:0003056!1.02e-21!49;UBERON:0002791!4.02e-21!29;UBERON:0003528!4.02e-21!29;UBERON:0001893!4.02e-21!29;UBERON:0003080!2.01e-20!40;UBERON:0004121!7.27e-20!102;UBERON:0000924!7.27e-20!102;UBERON:0006601!7.27e-20!102;UBERON:0002780!1.39e-19!39;UBERON:0001890!1.39e-19!39;UBERON:0006240!1.39e-19!39;UBERON:0007811!1.13e-14!86;UBERON:0000956!2.44e-14!21;UBERON:0001869!2.44e-14!21;UBERON:0000203!2.44e-14!21;UBERON:0000153!1.58e-13!94;UBERON:0002021!3.18e-12!10;UBERON:0000411!3.18e-12!10;UBERON:0001950!3.18e-12!10;UBERON:0002619!1.61e-11!17;UBERON:0003076!4.35e-08!12;UBERON:0003057!4.35e-08!12;UBERON:0002420!5.16e-08!8;UBERON:0007245!5.16e-08!8;UBERON:0010009!5.16e-08!8;UBERON:0010011!5.16e-08!8;UBERON:0000454!5.16e-08!8;UBERON:0002240!6.62e-07!6;UBERON:0005174!6.62e-07!6;UBERON:0001137!6.62e-07!6;UBERON:0002298!7.10e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.95e-43,54;UBERON:0001049,1.53e-38,52;UBERON:0005068,1.53e-38,52;UBERON:0006241,1.53e-38,52;UBERON:0007135,1.53e-38,52;UBERON:0001017,5.35e-38,73;UBERON:0001016,8.94e-37,75;UBERON:0002020,3.22e-34,34;UBERON:0002346,6.08e-30,64;UBERON:0003075,6.08e-30,64;UBERON:0007284,6.08e-30,64;UBERON:0000955,1.31e-29,47;UBERON:0006238,1.31e-29,47;UBERON:0002616,4.25e-28,46;UBERON:0004121,2.27e-27,95;UBERON:0000924,2.27e-27,95;UBERON:0006601,2.27e-27,95;UBERON:0010371,2.40e-25,73;UBERON:0003528,3.30e-25,29;UBERON:0002791,3.30e-25,29;UBERON:0001893,3.30e-25,29;UBERON:0002021,4.94e-24,10;UBERON:0000411,4.94e-24,10;UBERON:0001950,4.94e-24,10;UBERON:0003080,3.20e-23,40;UBERON:0002780,9.62e-22,39;UBERON:0001890,9.62e-22,39;UBERON:0006240,9.62e-22,39;UBERON:0002619,8.29e-19,17;UBERON:0010314,1.37e-18,92;UBERON:0003056,6.02e-18,49;UBERON:0000956,2.63e-17,21;UBERON:0001869,2.63e-17,21;UBERON:0000203,2.63e-17,21;UBERON:0003076,2.14e-16,12;UBERON:0003057,2.14e-16,12;UBERON:0000025,1.39e-13,114;UBERON:0002240,7.84e-13,6;UBERON:0005174,7.84e-13,6;UBERON:0001137,7.84e-13,6;UBERON:0004111,3.28e-12,122;UBERON:0001948,7.60e-11,5;UBERON:0002315,7.60e-11,5;UBERON:0011216,2.88e-09,194;UBERON:0002420,5.14e-09,8;UBERON:0007245,5.14e-09,8;UBERON:0010009,5.14e-09,8;UBERON:0010011,5.14e-09,8;UBERON:0000454,5.14e-09,8;UBERON:0002950,5.20e-09,4;UBERON:0001891,5.20e-09,4;UBERON:0009616,5.20e-09,4;UBERON:0010286,5.20e-09,4;UBERON:0004684,4.09e-08,3;UBERON:0002275,4.09e-08,3;UBERON:0002038,2.52e-07,3;UBERON:0009663,2.52e-07,3;UBERON:0009661,2.52e-07,3;UBERON:0000125,2.52e-07,3;UBERON:0002308,2.52e-07,3;UBERON:0002257,5.86e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,1.5869729378161,1.26766280701236,0,0,0,0,0,0,0,0.622137673850866,0.405017814995072,0.420649922702764,7.14127461009509,3.97563373712904,0.734944795289724,0.287536413054709,0,7.70811166995721,12.257984456178,7.0659005297872,0.923204014111357,0.914876436024097,2.08365348222704,5.862842979029,4.50210088025344,4.5839474333043,5.30331453852602,3.27454865837937,2.05039390407831,0,0.0755715601067855,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,2.63502717310392,2.72280718857492,0.255457055208591,0,0,0,2.54644086988199,3.20250421973039,1.00523481690292,6.60532416730651,6.13717097592793,3.32460871295296,4.54275536589721,0,0,0,0,0.130120442962704,0,0,0.30140963567143,0.544291993210623,0.384341160854549,0.281105173679186,0.776110112217047,0,0.189106080167819,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.9350773253346,1.02904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,4.97706828962155,4.21962071731931,0,0,0,0,0,0,0,0,0,0,0,1.60660658210904,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0.214337035031592,0,0,0.164549020602121,0,0,0.21183207086382,0,0,0,0,0,0,0,5.93360966433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,12.9892923801925,9.66682996665071,9.73922372846974,9.28007184655913,8.90607275701835,12.0863023582352,8.77529250301348,11.7083512838297,8.60970577069989,10.8729665467882,0.103787347584177,0,0,0.243106717068294,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0,0.25347929989024,0.565879024158229,0.0936415074698824,0.256100609619477,0.287177344778066,0.476293691283074,0.579421629724277,0.578727661391115,0.824171801606613,0.147198920134397,0,0.354951612318675,0,0.436039249896986,0.0941093804153306,0.25384382367503,0.73171189149109,0.263069711437843,0.407412341537585,1.12228454331548,0,0.394017929502254,0,0.309873682371932,0,0.999242311751784,0,0.644613162144895,0,0,0 | |||
|short_description=p4@Scn8a | |||
}} |
Latest revision as of 12:36, 26 September 2015
Short description: | p4@Scn8a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Scn8a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -117bp_to_uc007xsi.1_5end |
EntrezGene: | Scn8a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.35e-16 | 23 |
neuroblast (sensu Vertebrata) | 8.35e-16 | 23 |
neuron | 4.72e-10 | 33 |
neuronal stem cell | 4.72e-10 | 33 |
neuroblast | 4.72e-10 | 33 |
electrically signaling cell | 4.72e-10 | 33 |
raphe nuclei neuron | 4.09e-08 | 3 |
electrically responsive cell | 4.91e-08 | 39 |
electrically active cell | 4.91e-08 | 39 |
neuron of the substantia nigra | 2.52e-07 | 3 |
neural cell | 5.20e-07 | 43 |
neuron of the ventral spinal cord | 5.86e-07 | 3 |
ectodermal cell | 8.75e-07 | 44 |
neurectodermal cell | 8.75e-07 | 44 |