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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004766
|DRA_sample_Accession=CAGE@SAMD00004766
|accession_numbers=CAGE;DRX008688;DRR009560;DRZ000985;DRZ002370
|accession_numbers=CAGE;DRX008688;DRR009560;DRZ000985;DRZ002370;DRZ012335;DRZ013720
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|library_id=CNhs10645
|library_id=CNhs10645
|library_id_phase_based=2:CNhs10645
|library_id_phase_based=2:CNhs10645
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10038
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10038
|name=medulla oblongata, adult, pool1
|name=medulla oblongata, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 97: Line 101:
|top_motifs=REST:3.58415499794;SOX2:3.46244404202;NHLH1,2:3.41015246727;SOX5:3.39153558314;SOX{8,9,10}:3.35210255535;MYFfamily:3.2706128105;ZFP161:3.0580429424;RREB1:3.02487939223;NANOG:2.95431605146;HIC1:2.92470307892;MTF1:2.895495074;MED-1{core}:2.86976436904;MTE{core}:2.84652658467;NFIX:2.7676877533;ZBTB6:2.74267461608;PRRX1,2:2.73017886349;NKX3-2:2.61138444493;TFAP2B:2.61138237634;SMAD1..7,9:2.58663456567;RFX1:2.5739462341;ATF2:2.56815756673;EBF1:2.4936489516;GCM1,2:2.46741490466;TGIF1:2.44398424379;GTF2I:2.44233508303;PATZ1:2.37744407549;EP300:2.33046092024;JUN:2.2987894095;SOX17:2.29235110262;MAZ:2.28780084001;PAX5:2.22525605292;RFX2..5_RFXANK_RFXAP:2.21918313801;MZF1:2.21703519832;PRDM1:2.20993879805;EGR1..3:2.20236838113;SP1:2.19283879776;LMO2:2.03955708351;RBPJ:2.00326539259;ZNF423:1.99859080903;CUX2:1.98961392554;GFI1B:1.95923814265;TFAP2{A,C}:1.90997537784;POU6F1:1.85567522433;BREu{core}:1.76912463712;LEF1_TCF7_TCF7L1,2:1.72976616178;TLX1..3_NFIC{dimer}:1.55691735372;SREBF1,2:1.52782547665;HOX{A6,A7,B6,B7}:1.51747287525;KLF4:1.47320616979;MAFB:1.41866321716;XBP1:1.41753354761;HBP1_HMGB_SSRP1_UBTF:1.41061495338;FOX{D1,D2}:1.4072144379;FOXP3:1.38730560875;AHR_ARNT_ARNT2:1.35392709462;OCT4_SOX2{dimer}:1.34745985186;GATA4:1.34605089707;POU5F1:1.30412371673;GTF2A1,2:1.24381680572;RORA:1.23662664479;ZIC1..3:1.19798005938;TFDP1:1.17826629499;VSX1,2:1.16673614366;NKX2-3_NKX2-5:1.14233501837;AR:1.13962550917;MYBL2:1.12104154453;FOX{F1,F2,J1}:1.10814611329;DBP:1.05670072317;NR3C1:0.998294678153;XCPE1{core}:0.987653180773;NRF1:0.984855387267;PAX6:0.975117845816;PDX1:0.923241000531;FOXM1:0.914393155918;ESRRA:0.896802553824;STAT1,3:0.884271548373;FOXO1,3,4:0.835405631591;TFCP2:0.761635082658;ZNF238:0.741818853328;MYOD1:0.728328752178;ZNF143:0.673722276227;STAT2,4,6:0.672287386176;T:0.665143257914;GZF1:0.625318071459;IRF7:0.625130024952;HMX1:0.614552827391;MEF2{A,B,C,D}:0.605308691194;GFI1:0.59874027186;PBX1:0.583264525845;SPZ1:0.580739155677;ADNP_IRX_SIX_ZHX:0.526257398826;NFIL3:0.505402783343;TFAP4:0.464336719705;FOX{I1,J2}:0.463956412285;CREB1:0.453218466018;HAND1,2:0.40360308197;NR5A1,2:0.374290033989;NFY{A,B,C}:0.343471682015;BPTF:0.333052400437;ONECUT1,2:0.313583694541;HOX{A4,D4}:0.313149000964;ARID5B:0.289275500641;NFATC1..3:0.2814166976;FOXQ1:0.23856193396;FOXP1:0.238475304261;PAX2:0.228752696267;IRF1,2:0.216128077388;TBP:0.199409504034;ATF4:0.198937324716;NFE2L2:0.187787672851;CDC5L:0.165532116744;TLX2:0.148709477757;ZEB1:0.129349167988;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.127834358037;FOXN1:0.117221776473;TOPORS:0.08857388183;FOXA2:0.0806876198223;SRF:0.0499987863096;CRX:0.0244216103191;bHLH_family:0.0111404180859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00437207446018;ATF5_CREB3:-0.00489913700247;TBX4,5:-0.00723989527587;ZNF384:-0.0551272518252;HSF1,2:-0.0717769970342;ETS1,2:-0.0849209663344;POU3F1..4:-0.100721279227;ZNF148:-0.143403562249;NR1H4:-0.189070020044;ESR1:-0.219813863862;ALX4:-0.233063310658;HOXA9_MEIS1:-0.233273893374;IKZF1:-0.252337468544;NFE2:-0.252875025595;GATA6:-0.302264741663;HMGA1,2:-0.329784838562;SPI1:-0.343552115257;YY1:-0.34451883368;TP53:-0.361475135406;ATF6:-0.363001945731;SNAI1..3:-0.363437052403;PAX3,7:-0.399829757129;TEAD1:-0.403654990222;HNF1A:-0.423083934191;LHX3,4:-0.426826887382;CEBPA,B_DDIT3:-0.45365361893;NANOG{mouse}:-0.459876724859;SPIB:-0.467161703902;RXR{A,B,G}:-0.471358352235;HNF4A_NR2F1,2:-0.521664254796;FOXD3:-0.533439644552;NFE2L1:-0.564267389197;NKX6-1,2:-0.603332294592;IKZF2:-0.611531723702;HES1:-0.711611995634;TAL1_TCF{3,4,12}:-0.721716025571;PAX8:-0.778640301153;FOSL2:-0.803461116824;HLF:-0.803798401788;HIF1A:-0.853311018349;BACH2:-0.864410011729;GLI1..3:-0.871486327981;NFKB1_REL_RELA:-0.893597978827;DMAP1_NCOR{1,2}_SMARC:-0.896767542553;ELF1,2,4:-0.904258150044;ELK1,4_GABP{A,B1}:-0.931169937396;FOS_FOS{B,L1}_JUN{B,D}:-0.954850609313;RUNX1..3:-1.01652115817;POU1F1:-1.02603610691;POU2F1..3:-1.05161871728;UFEwm:-1.05601588329;PAX1,9:-1.15528178864;E2F1..5:-1.20356233528;PPARG:-1.2275104024;NKX3-1:-1.23902852528;PITX1..3:-1.25075002642;ALX1:-1.3019696105;NKX2-1,4:-1.3889518943;MYB:-1.42279868789;RXRA_VDR{dimer}:-1.44795979644;TEF:-1.59787639003;FOXL1:-1.70295170797;NR6A1:-1.70572976721;EN1,2:-1.77326551253;PAX4:-1.99947616148;EVI1:-2.07549256779;HOX{A5,B5}:-2.17264788732;ZBTB16:-2.34034874236;AIRE:-2.35447164693;NKX2-2,8:-2.53967771606;CDX1,2,4:-2.66159934993;STAT5{A,B}:-2.829037075
|top_motifs=REST:3.58415499794;SOX2:3.46244404202;NHLH1,2:3.41015246727;SOX5:3.39153558314;SOX{8,9,10}:3.35210255535;MYFfamily:3.2706128105;ZFP161:3.0580429424;RREB1:3.02487939223;NANOG:2.95431605146;HIC1:2.92470307892;MTF1:2.895495074;MED-1{core}:2.86976436904;MTE{core}:2.84652658467;NFIX:2.7676877533;ZBTB6:2.74267461608;PRRX1,2:2.73017886349;NKX3-2:2.61138444493;TFAP2B:2.61138237634;SMAD1..7,9:2.58663456567;RFX1:2.5739462341;ATF2:2.56815756673;EBF1:2.4936489516;GCM1,2:2.46741490466;TGIF1:2.44398424379;GTF2I:2.44233508303;PATZ1:2.37744407549;EP300:2.33046092024;JUN:2.2987894095;SOX17:2.29235110262;MAZ:2.28780084001;PAX5:2.22525605292;RFX2..5_RFXANK_RFXAP:2.21918313801;MZF1:2.21703519832;PRDM1:2.20993879805;EGR1..3:2.20236838113;SP1:2.19283879776;LMO2:2.03955708351;RBPJ:2.00326539259;ZNF423:1.99859080903;CUX2:1.98961392554;GFI1B:1.95923814265;TFAP2{A,C}:1.90997537784;POU6F1:1.85567522433;BREu{core}:1.76912463712;LEF1_TCF7_TCF7L1,2:1.72976616178;TLX1..3_NFIC{dimer}:1.55691735372;SREBF1,2:1.52782547665;HOX{A6,A7,B6,B7}:1.51747287525;KLF4:1.47320616979;MAFB:1.41866321716;XBP1:1.41753354761;HBP1_HMGB_SSRP1_UBTF:1.41061495338;FOX{D1,D2}:1.4072144379;FOXP3:1.38730560875;AHR_ARNT_ARNT2:1.35392709462;OCT4_SOX2{dimer}:1.34745985186;GATA4:1.34605089707;POU5F1:1.30412371673;GTF2A1,2:1.24381680572;RORA:1.23662664479;ZIC1..3:1.19798005938;TFDP1:1.17826629499;VSX1,2:1.16673614366;NKX2-3_NKX2-5:1.14233501837;AR:1.13962550917;MYBL2:1.12104154453;FOX{F1,F2,J1}:1.10814611329;DBP:1.05670072317;NR3C1:0.998294678153;XCPE1{core}:0.987653180773;NRF1:0.984855387267;PAX6:0.975117845816;PDX1:0.923241000531;FOXM1:0.914393155918;ESRRA:0.896802553824;STAT1,3:0.884271548373;FOXO1,3,4:0.835405631591;TFCP2:0.761635082658;ZNF238:0.741818853328;MYOD1:0.728328752178;ZNF143:0.673722276227;STAT2,4,6:0.672287386176;T:0.665143257914;GZF1:0.625318071459;IRF7:0.625130024952;HMX1:0.614552827391;MEF2{A,B,C,D}:0.605308691194;GFI1:0.59874027186;PBX1:0.583264525845;SPZ1:0.580739155677;ADNP_IRX_SIX_ZHX:0.526257398826;NFIL3:0.505402783343;TFAP4:0.464336719705;FOX{I1,J2}:0.463956412285;CREB1:0.453218466018;HAND1,2:0.40360308197;NR5A1,2:0.374290033989;NFY{A,B,C}:0.343471682015;BPTF:0.333052400437;ONECUT1,2:0.313583694541;HOX{A4,D4}:0.313149000964;ARID5B:0.289275500641;NFATC1..3:0.2814166976;FOXQ1:0.23856193396;FOXP1:0.238475304261;PAX2:0.228752696267;IRF1,2:0.216128077388;TBP:0.199409504034;ATF4:0.198937324716;NFE2L2:0.187787672851;CDC5L:0.165532116744;TLX2:0.148709477757;ZEB1:0.129349167988;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.127834358037;FOXN1:0.117221776473;TOPORS:0.08857388183;FOXA2:0.0806876198223;SRF:0.0499987863096;CRX:0.0244216103191;bHLH_family:0.0111404180859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00437207446018;ATF5_CREB3:-0.00489913700247;TBX4,5:-0.00723989527587;ZNF384:-0.0551272518252;HSF1,2:-0.0717769970342;ETS1,2:-0.0849209663344;POU3F1..4:-0.100721279227;ZNF148:-0.143403562249;NR1H4:-0.189070020044;ESR1:-0.219813863862;ALX4:-0.233063310658;HOXA9_MEIS1:-0.233273893374;IKZF1:-0.252337468544;NFE2:-0.252875025595;GATA6:-0.302264741663;HMGA1,2:-0.329784838562;SPI1:-0.343552115257;YY1:-0.34451883368;TP53:-0.361475135406;ATF6:-0.363001945731;SNAI1..3:-0.363437052403;PAX3,7:-0.399829757129;TEAD1:-0.403654990222;HNF1A:-0.423083934191;LHX3,4:-0.426826887382;CEBPA,B_DDIT3:-0.45365361893;NANOG{mouse}:-0.459876724859;SPIB:-0.467161703902;RXR{A,B,G}:-0.471358352235;HNF4A_NR2F1,2:-0.521664254796;FOXD3:-0.533439644552;NFE2L1:-0.564267389197;NKX6-1,2:-0.603332294592;IKZF2:-0.611531723702;HES1:-0.711611995634;TAL1_TCF{3,4,12}:-0.721716025571;PAX8:-0.778640301153;FOSL2:-0.803461116824;HLF:-0.803798401788;HIF1A:-0.853311018349;BACH2:-0.864410011729;GLI1..3:-0.871486327981;NFKB1_REL_RELA:-0.893597978827;DMAP1_NCOR{1,2}_SMARC:-0.896767542553;ELF1,2,4:-0.904258150044;ELK1,4_GABP{A,B1}:-0.931169937396;FOS_FOS{B,L1}_JUN{B,D}:-0.954850609313;RUNX1..3:-1.01652115817;POU1F1:-1.02603610691;POU2F1..3:-1.05161871728;UFEwm:-1.05601588329;PAX1,9:-1.15528178864;E2F1..5:-1.20356233528;PPARG:-1.2275104024;NKX3-1:-1.23902852528;PITX1..3:-1.25075002642;ALX1:-1.3019696105;NKX2-1,4:-1.3889518943;MYB:-1.42279868789;RXRA_VDR{dimer}:-1.44795979644;TEF:-1.59787639003;FOXL1:-1.70295170797;NR6A1:-1.70572976721;EN1,2:-1.77326551253;PAX4:-1.99947616148;EVI1:-2.07549256779;HOX{A5,B5}:-2.17264788732;ZBTB16:-2.34034874236;AIRE:-2.35447164693;NKX2-2,8:-2.53967771606;CDX1,2,4:-2.66159934993;STAT5{A,B}:-2.829037075
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10038-101F2;search_select_hide=table117:FF:10038-101F2
}}
}}

Latest revision as of 12:16, 3 June 2020

Name:medulla oblongata, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10645
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemedulla oblongata
dev stage18-64 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number7060209
catalog numberCat:636562
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004766
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10645 CAGE DRX008688 DRR009560
Accession ID Hg19

Library idBAMCTSS
CNhs10645 DRZ000985 DRZ002370
Accession ID Hg38

Library idBAMCTSS
CNhs10645 DRZ012335 DRZ013720
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.138
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.36
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0508
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.447
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.271
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0262
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0.0262
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.226
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.00675
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0262
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0508
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0508
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.21
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.55
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0508
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0584
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.148
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.21
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0963
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0262
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0508
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.0262
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.183
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0262
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0262
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.891
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0508
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.231
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.534
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0262
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0262
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0262
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.338
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0508
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.475
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0508
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0262
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.08
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.484
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0262
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0508
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.138
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0963
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.471
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.314
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.534
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0262
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.362
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.3
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0.0262
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0853
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.362
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0508
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0508
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.593
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0262
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.12
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.0742
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0742
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10645

Jaspar motifP-value
MA0002.20.0156
MA0003.10.445
MA0004.10.366
MA0006.10.691
MA0007.10.332
MA0009.10.162
MA0014.10.65
MA0017.10.016
MA0018.20.0396
MA0019.10.385
MA0024.10.987
MA0025.10.186
MA0027.10.524
MA0028.10.077
MA0029.10.187
MA0030.10.00887
MA0031.10.301
MA0035.20.132
MA0038.10.017
MA0039.20.623
MA0040.10.182
MA0041.10.102
MA0042.10.502
MA0043.10.351
MA0046.10.563
MA0047.20.627
MA0048.10.0753
MA0050.10.569
MA0051.10.817
MA0052.10.0456
MA0055.19.32654e-4
MA0057.10.899
MA0058.10.489
MA0059.10.0599
MA0060.10.0577
MA0061.10.00592
MA0062.20.0223
MA0065.20.00301
MA0066.10.0134
MA0067.10.705
MA0068.10.21
MA0069.10.639
MA0070.10.0337
MA0071.10.0555
MA0072.10.98
MA0073.10.701
MA0074.10.187
MA0076.10.187
MA0077.10.027
MA0078.10.935
MA0079.20.244
MA0080.21.16513e-4
MA0081.10.104
MA0083.10.792
MA0084.10.229
MA0087.10.122
MA0088.10.143
MA0090.10.377
MA0091.10.546
MA0092.10.401
MA0093.10.46
MA0099.21.63686e-9
MA0100.10.624
MA0101.10.0113
MA0102.20.509
MA0103.10.0766
MA0104.20.251
MA0105.18.13862e-6
MA0106.10.0171
MA0107.10.0102
MA0108.21.25356e-4
MA0111.10.373
MA0112.20.00139
MA0113.10.591
MA0114.10.0151
MA0115.10.483
MA0116.10.00115
MA0117.10.789
MA0119.10.0672
MA0122.10.415
MA0124.10.593
MA0125.10.117
MA0131.10.773
MA0135.10.00528
MA0136.12.41919e-6
MA0137.20.29
MA0138.20.117
MA0139.10.442
MA0140.10.0757
MA0141.10.0218
MA0142.10.473
MA0143.10.108
MA0144.10.748
MA0145.10.621
MA0146.10.0291
MA0147.10.118
MA0148.10.468
MA0149.10.00735
MA0150.10.00502
MA0152.10.903
MA0153.10.675
MA0154.10.0315
MA0155.10.946
MA0156.19.37318e-4
MA0157.10.948
MA0159.10.017
MA0160.10.0901
MA0162.10.183
MA0163.11.1616e-9
MA0164.10.556
MA0258.10.0222
MA0259.10.428



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10645

Novel motifP-value
10.0208
100.0193
1000.209
1010.994
1020.846
1030.122
1040.214
1050.653
1060.0809
1070.261
1080.815
1090.011
110.012
1100.0325
1110.0267
1120.345
1130.606
1140.0431
1150.826
1160.214
1170.00647
1180.0898
1190.115
120.839
1200.0754
1210.921
1220.548
1230.49
1240.157
1250.277
1260.126
1270.447
1280.264
1290.478
130.00358
1300.97
1310.0396
1320.679
1330.00248
1340.236
1350.0765
1360.0151
1370.808
1380.803
1390.0496
140.879
1400.113
1410.26
1420.854
1430.00671
1440.959
1450.141
1460.986
1470.96
1480.163
1490.324
150.048
1500.163
1510.778
1520.288
1530.75
1540.66
1550.165
1560.392
1570.419
1580.824
1590.0384
160.0568
1600.184
1610.217
1620.951
1630.924
1640.00495
1650.148
1660.896
1670.219
1680.982
1690.0129
170.159
180.0845
190.392
20.746
200.0978
210.0654
220.454
230.633
240.205
250.554
261.66736e-4
270.873
280.813
290.00509
30.0236
300.372
310.957
320.0209
330.116
340.882
350.324
360.0915
370.0492
380.368
390.481
40.916
400.105
410.407
420.162
430.127
440.0397
450.974
460.026
470.0473
480.0412
490.152
50.567
500.615
510.444
520.956
530.755
540.581
550.472
560.576
570.18
580.336
590.197
60.661
600.191
610.0781
620.174
630.237
640.145
650.353
660.263
670.467
680.502
690.511
70.124
700.00697
710.00577
720.508
730.0854
740.518
750.0125
760.138
770.379
780.00144
790.128
80.0438
800.697
810.417
820.473
830.296
840.521
850.36
860.161
870.0185
880.827
890.328
90.815
900.0123
910.321
920.481
930.876
940.035
950.0454
960.994
970.833
980.179
990.902



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10645


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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