FF:10157-103A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005804 | ||
|HumanCAGEScanFiles=NCig10028;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/parietal%2520lobe%252c%2520adult%252c%2520donor10252.NCig10028.10157-103A4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008701;DRR009573;DRZ000998;DRZ002383;DRZ012348;DRZ013733 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010034 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.38!238.31!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.76!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.16!159.36!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!140.34!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.09!121.95!SOX10;;chr4:81118647..81118666,+!p1@PRDM8!1.97!119.46!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.94!97.56!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.91!SOX2;;chr9:114287433..114287513,+!p1@ZNF483!1.86!178.58!ZNF483;;chr10:64134120..64134183,+!p1@ZNF365!1.82!77.71!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.82!64.49!SMARCE1;;chr17:37764128..37764258,-!p1@NEUROD2!1.80!61.39!NEUROD2;;chr2:162272785..162272836,+!p1@TBR1!1.78!58.70!TBR1;;chr11:113930425..113930471,+!p1@ZBTB16!1.76!79.99!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!74.82!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.76!56.22!FOXG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.75!54.98!ZMAT4;;chr11:61520075..61520136,+!p1@C11orf9!1.73!107.27!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.43!POU3F3;;chr2:2334997..2335053,-!p1@MYT1L!1.70!48.57!MYT1L;;chr5:88178983..88179012,-!p1@MEF2C!1.69!351.16!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.69!48.16!KCNIP3;;chr8:53322304..53322340,-!p1@ST18!1.69!47.74!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.74!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.64!72.55!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.64!42.16!OLIG2;;chr15:80733570..80733659,+!p2@ARNT2!1.63!41.54!ARNT2;;chrX:25034067..25034088,-!p1@ARX!1.60!38.65!ARX;;chr19:46801639..46801699,+!p1@HIF3A!1.59!38.03!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.59!37.82!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!53.95!CSRNP3;;chr18:53070846..53070902,-!p6@TCF4!1.58!37.41!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.57!35.96!NFIX;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.48!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!32.45!TEF;;chr4:57547454..57547469,-!p1@HOPX!1.52!32.24!HOPX;;chr21:34442540..34442560,+!p2@OLIG1!1.52!32.24!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.51!31.00!BCL11A;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.38!SOX2;;chr14:29236269..29236285,+!p3@FOXG1!1.49!29.97!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.48!28.94!ZNF385A;;chr12:26277956..26277980,-!p1@BHLHE41!1.47!100.04!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!1.45!36.38!ARNT2;;chr10:119302232..119302265,+!p1@EMX2!1.43!26.04!EMX2;;chr8:145560111..145560165,-!p2@SCRT1!1.43!25.84!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.43!25.63!ST18;;chr7:31380292..31380351,-!p1@NEUROD6!1.42!25.22!NEUROD6;;chr8:145560371..145560449,-!p1@SCRT1!1.41!24.80!SCRT1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.28!TUB;;chr16:1031762..1031781,+!p1@SOX8!1.40!23.98!SOX8;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.56!LHX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.39!23.36!PKNOX2;;chr11:31832862..31832884,-!p2@PAX6!1.39!23.36!PAX6;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.35!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.36!21.91!NKX6-2;;chr14:33403881..33403924,+!p1@NPAS3!1.35!21.50!NPAS3;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.20!SOX15;;chr15:31658288..31658338,+!p4@KLF13!1.34!20.88!KLF13;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.84!ASCL1;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.84!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.31!29.56!ZNF385A;;chr6:126112039..126112062,+!p8@NCOA7!1.31!23.15!NCOA7;;chr9:77112225..77112238,+!p2@RORB!1.30!18.81!RORB;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.30!18.81!POU3F3;;chr1:61548069..61548102,+!p3@NFIA!1.29!44.23!NFIA;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.63!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.28!21.70!NR2F1;;chr11:113930401..113930422,+!p3@ZBTB16!1.28!18.19!ZBTB16;;chr5:88179017..88179046,-!p2@MEF2C!1.27!69.45!MEF2C;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.78!ZIM2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.78!TBR1;;chr11:31832658..31832681,-!p1@PAX6!1.26!17.36!PAX6;;chr19:38085768..38085821,+!p1@ZNF540!1.25!24.80!ZNF540;;chr15:31631789..31631811,+!p13@KLF13!1.25!16.95!KLF13;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.95!HIF3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.24!16.53!ZBED1;;chr2:2330039..2330072,-!p6@MYT1L!1.24!16.53!MYT1L;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.98!BCL11A;;chr6:15401104..15401166,+!p5@JARID2!1.23!15.91!JARID2;;chr11:47400078..47400106,-!p1@SPI1!1.23!15.91!SPI1;;chr17:38256822..38256851,-!p1@NR1D1!1.22!119.46!NR1D1;;chr14:33403648..33403710,+!p3@NPAS3!1.22!15.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.21!19.02!KLF15;;chrX:118739835..118739862,-!p1@NKRF!1.21!16.74!NKRF;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.29!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.21!15.09!RFX4;;chr17:70117153..70117174,+!p1@SOX9!1.20!151.91!SOX9;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.62!SATB2;;chr1:244219775..244219893,+!p2@ZNF238!1.20!20.05!ZNF238;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.67!DACH2;;chr9:3525910..3525955,-!p4@RFX3!1.19!42.78!RFX3;;chr3:141105705..141105770,+!p4@ZBTB38!1.18!17.36!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.18!16.12!HOPX;;chr7:63505799..63505904,+!p1@ZNF727!1.18!14.26!ZNF727;;chr2:2328299..2328363,-!p3@MYT1L!1.18!14.05!MYT1L;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.85!HSF4;;chr9:126773880..126773895,+!p2@LHX2!1.17!13.85!LHX2;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.30!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.16!13.43!IRF8;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.43!CSRNP3;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.43!KCNIP3;;chr14:58798013..58798071,+!p2@ARID4A!1.16!13.43!ARID4A;;chr6:143266185..143266238,-!p2@HIVEP2!1.15!17.98!HIVEP2;;chr7:73038839..73038862,-!p1@MLXIPL!1.15!13.23!MLXIPL;;chr11:125034605..125034636,+!p2@PKNOX2!1.15!13.02!PKNOX2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.30!ID4;;chr3:24536253..24536328,-!p1@THRB!1.14!24.39!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.88!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.14!16.12!DPF1;;chrX:70315688..70315709,+!p1@FOXO4!1.13!29.35!FOXO4;;chr6:28321971..28321995,-!p1@ZNF323!1.13!12.61!ZNF323;;chr17:38219209..38219230,+!p1@THRA!1.12!158.12!THRA;;chr1:8585945..8586056,-!p3@RERE!1.11!40.30!RERE;;chr3:141105235..141105307,+!p7@ZBTB38!1.11!11.99!ZBTB38;;chr14:24020938..24020988,-!p1@ZFHX2!1.10!16.53!ZFHX2;;chr8:30890810..30890880,-!p1@PURG!1.10!11.57!PURG;;chr1:151032860..151032918,+!p1@MLLT11!1.09!135.38!MLLT11;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.26!SOX5;;chr14:33408072..33408114,+!p2@NPAS3!1.08!13.02!NPAS3;;chr20:42544782..42544828,+!p4@TOX2!1.08!11.16!TOX2;;chr3:21792682..21792720,-!p1@ZNF385D!1.08!11.16!ZNF385D;;chr5:178368186..178368238,+!p1@ZNF454!1.07!19.22!ZNF454;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.19!TCF4;;chr16:67198683..67198698,+!p2@HSF4!1.07!10.75!HSF4;;chr1:40105299..40105326,-!p1@HEYL!1.07!10.75!HEYL;;chr10:38265517..38265591,-!p1@ZNF25!1.06!41.13!ZNF25;;chr19:53636125..53636178,-!p1@ZNF415!1.06!29.97!ZNF415;;chr5:88179518..88179569,-!p5@MEF2C!1.06!13.85!MEF2C;;chr2:180726291..180726311,-!p1@ZNF385B!1.06!10.54!ZNF385B;;chr3:187463179..187463201,-!p2@BCL6!1.05!43.20!BCL6;;chr15:61521417..61521460,-!p2@RORA!1.05!23.15!RORA;;chr13:46549911..46549956,-!p3@ZC3H13!1.05!14.67!ZC3H13;;chr10:64134045..64134083,+!p3@ZNF365!1.05!10.33!ZNF365;;chr19:7580549..7580596,+!p3@ZNF358!1.05!10.33!ZNF358;;chr2:162273241..162273253,+!p4@TBR1!1.05!10.33!TBR1;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.13!HSF4;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.77!TCF4;;chr7:64023410..64023428,-!p2@ZNF680!1.04!15.71!ZNF680;;chr19:13135566..13135577,+!p9@NFIX!1.04!9.92!NFIX;;chr12:24102576..24102623,-!p2@SOX5!1.04!9.92!SOX5;;chr9:126774058..126774081,+!p3@LHX2!1.04!9.92!LHX2;;chr2:113057415..113057477,+!p3@ZC3H6!1.03!12.61!ZC3H6;;chr11:31832807..31832823,-!p4@PAX6!1.03!9.71!PAX6;;chr21:39870339..39870443,-!p1@ERG!1.03!9.71!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.02!33.28!DPF3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.51!NKRF;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.51!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.02!9.51!ZNF366;;chr3:18466787..18466839,-!p1@SATB1!1.01!41.75!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.01!19.84!ZNF395;;chr5:138609489..138609542,+!p8@MATR3!1.01!9.30!MATR3;;chr9:14314946..14314983,-!p8@NFIB!1.01!9.30!NFIB;;chr5:139487608..139487663,+!p3@PURA!1.00!19.43!PURA;;chr20:51588873..51588953,+!p1@TSHZ2!1.00!11.99!TSHZ2;;chr11:125034586..125034604,+!p3@PKNOX2!1.00!9.09!PKNOX2;;chr16:67197952..67197990,+!p5@HSF4!1.00!9.09!HSF4;;chr3:24536332..24536358,-!p2@THRB!1.00!8.89!THRB;;chr2:214016314..214016343,-!p2@IKZF2!0.99!14.88!IKZF2;;chr2:162273254..162273267,+!p6@TBR1!0.99!8.68!TBR1;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.68!SOX7;;chr3:114819124..114819200,-!p3@ZBTB20!0.98!20.26!ZBTB20;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.47!MYT1L;;chr3:114343039..114343085,-!p8@ZBTB20!0.98!8.47!ZBTB20;;chr4:57547751..57547764,-!p6@HOPX!0.98!8.47!HOPX;;chr10:31610110..31610159,+!p2@ZEB1!0.98!8.47!ZEB1;;chr12:106976656..106976672,+!p4@RFX4!0.98!8.47!RFX4;;chr15:31631813..31631825,+!p17@KLF13!0.98!8.47!KLF13;;chr18:53070913..53070933,-!p16@TCF4!0.98!8.47!TCF4;;chr12:26277929..26277955,-!p3@BHLHE41!0.97!11.99!BHLHE41;;chr3:18466660..18466676,-!p5@SATB1!0.97!9.92!SATB1;;chr18:45935720..45935772,-!p1@ZBTB7C!0.97!8.27!ZBTB7C;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.27!RUNX1T1;;chr6:126112074..126112144,+!p1@NCOA7!0.96!112.44!NCOA7;;chr13:45151434..45151507,-!p3@TSC22D1!0.96!46.30!TSC22D1;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.06!ZNF323;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.06!CSRNP3;;chr2:42721205..42721307,+!p4@MTA3!0.96!8.06!MTA3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.06!EGR4;;chr7:64023441..64023462,-!p1@ZNF680!0.95!64.90!ZNF680;;chr5:172483347..172483407,+!p1@C5orf41!0.95!61.59!CREBRF;;chr16:79634624..79634642,-!p1@MAF!0.95!32.24!MAF;;chr20:3388541..3388575,-!p2@C20orf194!0.95!31.62!C20orf194;;chr19:4065848..4065909,-!p4@ZBTB7A!0.95!15.71!ZBTB7A;;chr10:64133862..64133884,+!p4@ZNF365!0.95!7.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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.38!238.31!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.24!171.76!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.16!159.36!RORB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!140.34!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.09!121.95!SOX10;;chr4:81118647..81118666,+!p1@PRDM8!1.97!119.46!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.94!97.56!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.93!83.91!SOX2;;chr9:114287433..114287513,+!p1@ZNF483!1.86!178.58!ZNF483;;chr10:64134120..64134183,+!p1@ZNF365!1.82!77.71!ZNF365;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.82!64.49!SMARCE1;;chr17:37764128..37764258,-!p1@NEUROD2!1.80!61.39!NEUROD2;;chr2:162272785..162272836,+!p1@TBR1!1.78!58.70!TBR1;;chr11:113930425..113930471,+!p1@ZBTB16!1.76!79.99!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!74.82!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.76!56.22!FOXG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.75!54.98!ZMAT4;;chr11:61520075..61520136,+!p1@C11orf9!1.73!107.27!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.43!POU3F3;;chr2:2334997..2335053,-!p1@MYT1L!1.70!48.57!MYT1L;;chr5:88178983..88179012,-!p1@MEF2C!1.69!351.16!MEF2C;;chr2:95963052..95963106,+!p1@KCNIP3!1.69!48.16!KCNIP3;;chr8:53322304..53322340,-!p1@ST18!1.69!47.74!ST18;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.74!RFX4;;chr2:145277882..145277967,-!p3@ZEB2!1.64!72.55!ZEB2;;chr21:34398234..34398250,+!p1@OLIG2!1.64!42.16!OLIG2;;chr15:80733570..80733659,+!p2@ARNT2!1.63!41.54!ARNT2;;chrX:25034067..25034088,-!p1@ARX!1.60!38.65!ARX;;chr19:46801639..46801699,+!p1@HIF3A!1.59!38.03!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.59!37.82!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!1.58!53.95!CSRNP3;;chr18:53070846..53070902,-!p6@TCF4!1.58!37.41!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.57!35.96!NFIX;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.48!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!32.45!TEF;;chr4:57547454..57547469,-!p1@HOPX!1.52!32.24!HOPX;;chr21:34442540..34442560,+!p2@OLIG1!1.52!32.24!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.51!31.00!BCL11A;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.38!SOX2;;chr14:29236269..29236285,+!p3@FOXG1!1.49!29.97!FOXG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.48!28.94!ZNF385A;;chr12:26277956..26277980,-!p1@BHLHE41!1.47!100.04!BHLHE41;;chr15:80696703..80696754,+!p1@ARNT2!1.45!36.38!ARNT2;;chr10:119302232..119302265,+!p1@EMX2!1.43!26.04!EMX2;;chr8:145560111..145560165,-!p2@SCRT1!1.43!25.84!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.43!25.63!ST18;;chr7:31380292..31380351,-!p1@NEUROD6!1.42!25.22!NEUROD6;;chr8:145560371..145560449,-!p1@SCRT1!1.41!24.80!SCRT1;;chr11:8102846..8102892,+!p1@TUB!1.40!33.28!TUB;;chr16:1031762..1031781,+!p1@SOX8!1.40!23.98!SOX8;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.56!LHX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.39!23.36!PKNOX2;;chr11:31832862..31832884,-!p2@PAX6!1.39!23.36!PAX6;;chr10:48355030..48355090,+!p1@ZNF488!1.38!29.35!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.36!21.91!NKX6-2;;chr14:33403881..33403924,+!p1@NPAS3!1.35!21.50!NPAS3;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.20!SOX15;;chr15:31658288..31658338,+!p4@KLF13!1.34!20.88!KLF13;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.84!ASCL1;;chr14:29234581..29234601,+!p2@FOXG1!1.32!19.84!FOXG1;;chr12:54785074..54785122,-!p2@ZNF385A!1.31!29.56!ZNF385A;;chr6:126112039..126112062,+!p8@NCOA7!1.31!23.15!NCOA7;;chr9:77112225..77112238,+!p2@RORB!1.30!18.81!RORB;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.30!18.81!POU3F3;;chr1:61548069..61548102,+!p3@NFIA!1.29!44.23!NFIA;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.63!PROX1;;chr5:92920256..92920282,+!p7@NR2F1!1.28!21.70!NR2F1;;chr11:113930401..113930422,+!p3@ZBTB16!1.28!18.19!ZBTB16;;chr5:88179017..88179046,-!p2@MEF2C!1.27!69.45!MEF2C;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.78!ZIM2;;chr2:162272889..162272915,+!p2@TBR1!1.27!17.78!TBR1;;chr11:31832658..31832681,-!p1@PAX6!1.26!17.36!PAX6;;chr19:38085768..38085821,+!p1@ZNF540!1.25!24.80!ZNF540;;chr15:31631789..31631811,+!p13@KLF13!1.25!16.95!KLF13;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.95!HIF3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.24!16.53!ZBED1;;chr2:2330039..2330072,-!p6@MYT1L!1.24!16.53!MYT1L;;chr2:60780607..60780624,-!p2@BCL11A!1.23!48.98!BCL11A;;chr6:15401104..15401166,+!p5@JARID2!1.23!15.91!JARID2;;chr11:47400078..47400106,-!p1@SPI1!1.23!15.91!SPI1;;chr17:38256822..38256851,-!p1@NR1D1!1.22!119.46!NR1D1;;chr14:33403648..33403710,+!p3@NPAS3!1.22!15.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.21!19.02!KLF15;;chrX:118739835..118739862,-!p1@NKRF!1.21!16.74!NKRF;;chr2:162272716..162272753,+!p3@TBR1!1.21!15.29!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.21!15.09!RFX4;;chr17:70117153..70117174,+!p1@SOX9!1.20!151.91!SOX9;;chr2:200323414..200323455,-!p1@SATB2!1.20!31.62!SATB2;;chr1:244219775..244219893,+!p2@ZNF238!1.20!20.05!ZNF238;;chrX:85969626..85969664,+!p1@DACH2!1.20!14.67!DACH2;;chr9:3525910..3525955,-!p4@RFX3!1.19!42.78!RFX3;;chr3:141105705..141105770,+!p4@ZBTB38!1.18!17.36!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.18!16.12!HOPX;;chr7:63505799..63505904,+!p1@ZNF727!1.18!14.26!ZNF727;;chr2:2328299..2328363,-!p3@MYT1L!1.18!14.05!MYT1L;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.85!HSF4;;chr9:126773880..126773895,+!p2@LHX2!1.17!13.85!LHX2;;chr9:3525867..3525902,-!p3@RFX3!1.16!46.30!RFX3;;chr16:85932760..85932775,+!p1@IRF8!1.16!13.43!IRF8;;chr2:166428839..166428859,+!p2@CSRNP3!1.16!13.43!CSRNP3;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.43!KCNIP3;;chr14:58798013..58798071,+!p2@ARID4A!1.16!13.43!ARID4A;;chr6:143266185..143266238,-!p2@HIVEP2!1.15!17.98!HIVEP2;;chr7:73038839..73038862,-!p1@MLXIPL!1.15!13.23!MLXIPL;;chr11:125034605..125034636,+!p2@PKNOX2!1.15!13.02!PKNOX2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.30!ID4;;chr3:24536253..24536328,-!p1@THRB!1.14!24.39!THRB;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.88!ZBTB16;;chr19:38720294..38720348,-!p1@DPF1!1.14!16.12!DPF1;;chrX:70315688..70315709,+!p1@FOXO4!1.13!29.35!FOXO4;;chr6:28321971..28321995,-!p1@ZNF323!1.13!12.61!ZNF323;;chr17:38219209..38219230,+!p1@THRA!1.12!158.12!THRA;;chr1:8585945..8586056,-!p3@RERE!1.11!40.30!RERE;;chr3:141105235..141105307,+!p7@ZBTB38!1.11!11.99!ZBTB38;;chr14:24020938..24020988,-!p1@ZFHX2!1.10!16.53!ZFHX2;;chr8:30890810..30890880,-!p1@PURG!1.10!11.57!PURG;;chr1:151032860..151032918,+!p1@MLLT11!1.09!135.38!MLLT11;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.26!SOX5;;chr14:33408072..33408114,+!p2@NPAS3!1.08!13.02!NPAS3;;chr20:42544782..42544828,+!p4@TOX2!1.08!11.16!TOX2;;chr3:21792682..21792720,-!p1@ZNF385D!1.08!11.16!ZNF385D;;chr5:178368186..178368238,+!p1@ZNF454!1.07!19.22!ZNF454;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.19!TCF4;;chr16:67198683..67198698,+!p2@HSF4!1.07!10.75!HSF4;;chr1:40105299..40105326,-!p1@HEYL!1.07!10.75!HEYL;;chr10:38265517..38265591,-!p1@ZNF25!1.06!41.13!ZNF25;;chr19:53636125..53636178,-!p1@ZNF415!1.06!29.97!ZNF415;;chr5:88179518..88179569,-!p5@MEF2C!1.06!13.85!MEF2C;;chr2:180726291..180726311,-!p1@ZNF385B!1.06!10.54!ZNF385B;;chr3:187463179..187463201,-!p2@BCL6!1.05!43.20!BCL6;;chr15:61521417..61521460,-!p2@RORA!1.05!23.15!RORA;;chr13:46549911..46549956,-!p3@ZC3H13!1.05!14.67!ZC3H13;;chr10:64134045..64134083,+!p3@ZNF365!1.05!10.33!ZNF365;;chr19:7580549..7580596,+!p3@ZNF358!1.05!10.33!ZNF358;;chr2:162273241..162273253,+!p4@TBR1!1.05!10.33!TBR1;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.13!HSF4;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.77!TCF4;;chr7:64023410..64023428,-!p2@ZNF680!1.04!15.71!ZNF680;;chr19:13135566..13135577,+!p9@NFIX!1.04!9.92!NFIX;;chr12:24102576..24102623,-!p2@SOX5!1.04!9.92!SOX5;;chr9:126774058..126774081,+!p3@LHX2!1.04!9.92!LHX2;;chr2:113057415..113057477,+!p3@ZC3H6!1.03!12.61!ZC3H6;;chr11:31832807..31832823,-!p4@PAX6!1.03!9.71!PAX6;;chr21:39870339..39870443,-!p1@ERG!1.03!9.71!ERG;;chr14:73360799..73360817,-!p1@DPF3!1.02!33.28!DPF3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.51!NKRF;;chr16:67197776..67197831,+!p4@HSF4!1.02!9.51!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.02!9.51!ZNF366;;chr3:18466787..18466839,-!p1@SATB1!1.01!41.75!SATB1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.01!19.84!ZNF395;;chr5:138609489..138609542,+!p8@MATR3!1.01!9.30!MATR3;;chr9:14314946..14314983,-!p8@NFIB!1.01!9.30!NFIB;;chr5:139487608..139487663,+!p3@PURA!1.00!19.43!PURA;;chr20:51588873..51588953,+!p1@TSHZ2!1.00!11.99!TSHZ2;;chr11:125034586..125034604,+!p3@PKNOX2!1.00!9.09!PKNOX2;;chr16:67197952..67197990,+!p5@HSF4!1.00!9.09!HSF4;;chr3:24536332..24536358,-!p2@THRB!1.00!8.89!THRB;;chr2:214016314..214016343,-!p2@IKZF2!0.99!14.88!IKZF2;;chr2:162273254..162273267,+!p6@TBR1!0.99!8.68!TBR1;;chr8:10588010..10588030,-!p1@SOX7!0.99!8.68!SOX7;;chr3:114819124..114819200,-!p3@ZBTB20!0.98!20.26!ZBTB20;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.47!MYT1L;;chr3:114343039..114343085,-!p8@ZBTB20!0.98!8.47!ZBTB20;;chr4:57547751..57547764,-!p6@HOPX!0.98!8.47!HOPX;;chr10:31610110..31610159,+!p2@ZEB1!0.98!8.47!ZEB1;;chr12:106976656..106976672,+!p4@RFX4!0.98!8.47!RFX4;;chr15:31631813..31631825,+!p17@KLF13!0.98!8.47!KLF13;;chr18:53070913..53070933,-!p16@TCF4!0.98!8.47!TCF4;;chr12:26277929..26277955,-!p3@BHLHE41!0.97!11.99!BHLHE41;;chr3:18466660..18466676,-!p5@SATB1!0.97!9.92!SATB1;;chr18:45935720..45935772,-!p1@ZBTB7C!0.97!8.27!ZBTB7C;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.27!RUNX1T1;;chr6:126112074..126112144,+!p1@NCOA7!0.96!112.44!NCOA7;;chr13:45151434..45151507,-!p3@TSC22D1!0.96!46.30!TSC22D1;;chr6:28321827..28321856,-!p5@ZNF323!0.96!8.06!ZNF323;;chr2:166428861..166428883,+!p3@CSRNP3!0.96!8.06!CSRNP3;;chr2:42721205..42721307,+!p4@MTA3!0.96!8.06!MTA3;;chr2:73520667..73520683,-!p1@EGR4!0.96!8.06!EGR4;;chr7:64023441..64023462,-!p1@ZNF680!0.95!64.90!ZNF680;;chr5:172483347..172483407,+!p1@C5orf41!0.95!61.59!CREBRF;;chr16:79634624..79634642,-!p1@MAF!0.95!32.24!MAF;;chr20:3388541..3388575,-!p2@C20orf194!0.95!31.62!C20orf194;;chr19:4065848..4065909,-!p4@ZBTB7A!0.95!15.71!ZBTB7A;;chr10:64133862..64133884,+!p4@ZNF365!0.95!7.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%252c%2520adult%252c%2520donor10252.CNhs12317.10157-103A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10157-103A4 | |id=FF:10157-103A4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010034 | |is_a=EFO:0002091;;FF:0000002;;FF:0010034 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12317 | |||
|library_id_phase_based=2:CNhs12317 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10157 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10157 | |||
|name=parietal lobe, adult, donor10252 | |name=parietal lobe, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 62: | ||
|profile_cagescan=NCig10028,,, | |profile_cagescan=NCig10028,,, | ||
|profile_hcage=CNhs12317,LSID913,release011,COMPLETED | |profile_hcage=CNhs12317,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 80: | ||
|rna_weight_ug=55.85025 | |rna_weight_ug=55.85025 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 102: | ||
|top_motifs=DBP:4.08558100876;MYFfamily:3.93887082816;AHR_ARNT_ARNT2:3.9363225697;HOXA9_MEIS1:3.92122164427;REST:3.9098321918;NHLH1,2:3.84124506297;CUX2:3.71881782176;PRRX1,2:3.61283047121;RREB1:3.56769477543;ATF2:3.33032804636;ZFP161:3.24419868154;PRDM1:3.24177142017;MED-1{core}:3.17471384943;EGR1..3:3.12526628875;ZBTB6:2.97881613548;FOXQ1:2.93640880349;GATA4:2.83831222452;MTE{core}:2.82474485391;GTF2I:2.81280271231;OCT4_SOX2{dimer}:2.7431742371;MTF1:2.73549944166;PAX4:2.63531629799;FOXD3:2.63008510372;MZF1:2.61889232207;SOX2:2.59724113624;NKX3-2:2.56068839252;TFAP2B:2.53624813715;POU5F1:2.49233029008;FOXM1:2.48050005307;CDC5L:2.41829369066;PAX6:2.39539916377;RFX2..5_RFXANK_RFXAP:2.29898329699;RFX1:2.27254341231;POU6F1:2.26259294243;BPTF:2.22188722159;GFI1B:2.219546202;ZNF384:2.20793574025;PATZ1:2.19119438812;PAX5:2.1631006616;NFIL3:2.14739402179;ARID5B:2.12366360219;IKZF2:2.11395465688;TGIF1:2.10508273058;HIC1:2.07019174606;HMGA1,2:2.04788978528;FOXP1:2.01266409919;KLF4:1.98205459504;BREu{core}:1.87325792242;SOX{8,9,10}:1.87311989281;POU3F1..4:1.83958840302;NFIX:1.81903500705;HBP1_HMGB_SSRP1_UBTF:1.77631586915;LMO2:1.76541140823;FOX{F1,F2,J1}:1.71034585152;MAZ:1.68796488154;SMAD1..7,9:1.61561501723;NRF1:1.60685250339;SOX5:1.60520244438;HOX{A4,D4}:1.5470351033;TEF:1.53626509706;NKX6-1,2:1.47701454406;TFDP1:1.46567621881;FOXP3:1.43421362013;T:1.3805196264;ALX1:1.37620685158;EP300:1.30696383302;GCM1,2:1.2673126486;NANOG:1.25267852875;JUN:1.23316524377;STAT1,3:1.22387701195;SOX17:1.21867327739;POU1F1:1.1939317036;EBF1:1.17587680974;MAFB:1.16083475802;LEF1_TCF7_TCF7L1,2:1.15999627424;HAND1,2:1.11637427701;XBP1:1.07748107114;RBPJ:1.07286683553;ONECUT1,2:1.04040246865;ZNF143:0.9969450018;FOX{D1,D2}:0.966254909322;ADNP_IRX_SIX_ZHX:0.933310576647;FOXL1:0.920822941988;ZNF238:0.874133955281;SP1:0.857435036446;STAT2,4,6:0.856522241158;AR:0.842789077818;ZBTB16:0.838996156786;NR3C1:0.826997260669;SPZ1:0.820496149995;MYOD1:0.811348244491;TOPORS:0.801665905676;GTF2A1,2:0.691291983865;SREBF1,2:0.67997274571;NKX2-3_NKX2-5:0.678458672762;TLX1..3_NFIC{dimer}:0.673017673744;ESRRA:0.645917330808;FOXN1:0.61463033244;ZEB1:0.598397827282;TFAP2{A,C}:0.597654708914;PBX1:0.582292716655;CRX:0.56981524989;CREB1:0.51584031216;TLX2:0.515822291558;HMX1:0.50617846536;MYBL2:0.50429919472;GZF1:0.497515915358;MEF2{A,B,C,D}:0.425338666209;ATF5_CREB3:0.390331973204;AIRE:0.378965494609;UFEwm:0.360712763003;RORA:0.326053575888;GFI1:0.301302663405;FOXO1,3,4:0.233586606241;ZNF423:0.204916161862;ZIC1..3:0.175511488692;IRF7:0.141645365403;FOXA2:0.0757174511461;YY1:0.0424862438569;FOX{I1,J2}:0.0235179501448;DMAP1_NCOR{1,2}_SMARC:0.00895351454877;PAX2:-0.00835285830532;NKX3-1:-0.0168973886548;CDX1,2,4:-0.0239320062183;ATF4:-0.04700131223;HSF1,2:-0.0473015053195;NFATC1..3:-0.0712152895731;NFY{A,B,C}:-0.0815008777447;PAX3,7:-0.0981228312954;TBX4,5:-0.19387004622;IKZF1:-0.197684728477;IRF1,2:-0.205544777676;NFE2L2:-0.239417424265;HOX{A6,A7,B6,B7}:-0.269761545089;NKX2-2,8:-0.309458013609;LHX3,4:-0.31899385631;EVI1:-0.352893179741;HIF1A:-0.374862751911;PDX1:-0.378743766596;PAX1,9:-0.379721464853;SPI1:-0.438565636227;XCPE1{core}:-0.454201427984;NANOG{mouse}:-0.489654470546;SNAI1..3:-0.499451868344;VSX1,2:-0.508431841771;CEBPA,B_DDIT3:-0.510306315635;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.541381394471;NFE2:-0.573633404557;bHLH_family:-0.593401393606;NFE2L1:-0.593962262551;SPIB:-0.773790438322;ATF6:-0.828131635139;PITX1..3:-0.841707855247;GATA6:-0.857117611784;ETS1,2:-0.892440251973;HNF1A:-1.08298719315;FOSL2:-1.09780370055;BACH2:-1.09796329324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10061134445;TP53:-1.11527422237;PAX8:-1.1203964022;TAL1_TCF{3,4,12}:-1.15113326937;NR1H4:-1.16043439201;HNF4A_NR2F1,2:-1.16901134883;E2F1..5:-1.16962458757;TEAD1:-1.17147478625;FOS_FOS{B,L1}_JUN{B,D}:-1.17437381625;NR5A1,2:-1.27283139839;TFCP2:-1.29641899602;NFKB1_REL_RELA:-1.2990395968;POU2F1..3:-1.31651341592;RUNX1..3:-1.34097578894;TFAP4:-1.34986647471;GLI1..3:-1.4068071297;RXRA_VDR{dimer}:-1.48754516291;ALX4:-1.48816839285;ELK1,4_GABP{A,B1}:-1.51402212844;NKX2-1,4:-1.51711454897;ZNF148:-1.52000673373;HLF:-1.55388989862;ELF1,2,4:-1.55756250677;RXR{A,B,G}:-1.58633605086;PPARG:-1.62084288297;TBP:-1.68060687906;MYB:-1.75860180603;ESR1:-1.77772562245;SRF:-2.00214295858;STAT5{A,B}:-2.06802130965;HOX{A5,B5}:-2.30642319125;NR6A1:-2.36367092512;EN1,2:-2.53523135548;HES1:-2.75754948935 | |top_motifs=DBP:4.08558100876;MYFfamily:3.93887082816;AHR_ARNT_ARNT2:3.9363225697;HOXA9_MEIS1:3.92122164427;REST:3.9098321918;NHLH1,2:3.84124506297;CUX2:3.71881782176;PRRX1,2:3.61283047121;RREB1:3.56769477543;ATF2:3.33032804636;ZFP161:3.24419868154;PRDM1:3.24177142017;MED-1{core}:3.17471384943;EGR1..3:3.12526628875;ZBTB6:2.97881613548;FOXQ1:2.93640880349;GATA4:2.83831222452;MTE{core}:2.82474485391;GTF2I:2.81280271231;OCT4_SOX2{dimer}:2.7431742371;MTF1:2.73549944166;PAX4:2.63531629799;FOXD3:2.63008510372;MZF1:2.61889232207;SOX2:2.59724113624;NKX3-2:2.56068839252;TFAP2B:2.53624813715;POU5F1:2.49233029008;FOXM1:2.48050005307;CDC5L:2.41829369066;PAX6:2.39539916377;RFX2..5_RFXANK_RFXAP:2.29898329699;RFX1:2.27254341231;POU6F1:2.26259294243;BPTF:2.22188722159;GFI1B:2.219546202;ZNF384:2.20793574025;PATZ1:2.19119438812;PAX5:2.1631006616;NFIL3:2.14739402179;ARID5B:2.12366360219;IKZF2:2.11395465688;TGIF1:2.10508273058;HIC1:2.07019174606;HMGA1,2:2.04788978528;FOXP1:2.01266409919;KLF4:1.98205459504;BREu{core}:1.87325792242;SOX{8,9,10}:1.87311989281;POU3F1..4:1.83958840302;NFIX:1.81903500705;HBP1_HMGB_SSRP1_UBTF:1.77631586915;LMO2:1.76541140823;FOX{F1,F2,J1}:1.71034585152;MAZ:1.68796488154;SMAD1..7,9:1.61561501723;NRF1:1.60685250339;SOX5:1.60520244438;HOX{A4,D4}:1.5470351033;TEF:1.53626509706;NKX6-1,2:1.47701454406;TFDP1:1.46567621881;FOXP3:1.43421362013;T:1.3805196264;ALX1:1.37620685158;EP300:1.30696383302;GCM1,2:1.2673126486;NANOG:1.25267852875;JUN:1.23316524377;STAT1,3:1.22387701195;SOX17:1.21867327739;POU1F1:1.1939317036;EBF1:1.17587680974;MAFB:1.16083475802;LEF1_TCF7_TCF7L1,2:1.15999627424;HAND1,2:1.11637427701;XBP1:1.07748107114;RBPJ:1.07286683553;ONECUT1,2:1.04040246865;ZNF143:0.9969450018;FOX{D1,D2}:0.966254909322;ADNP_IRX_SIX_ZHX:0.933310576647;FOXL1:0.920822941988;ZNF238:0.874133955281;SP1:0.857435036446;STAT2,4,6:0.856522241158;AR:0.842789077818;ZBTB16:0.838996156786;NR3C1:0.826997260669;SPZ1:0.820496149995;MYOD1:0.811348244491;TOPORS:0.801665905676;GTF2A1,2:0.691291983865;SREBF1,2:0.67997274571;NKX2-3_NKX2-5:0.678458672762;TLX1..3_NFIC{dimer}:0.673017673744;ESRRA:0.645917330808;FOXN1:0.61463033244;ZEB1:0.598397827282;TFAP2{A,C}:0.597654708914;PBX1:0.582292716655;CRX:0.56981524989;CREB1:0.51584031216;TLX2:0.515822291558;HMX1:0.50617846536;MYBL2:0.50429919472;GZF1:0.497515915358;MEF2{A,B,C,D}:0.425338666209;ATF5_CREB3:0.390331973204;AIRE:0.378965494609;UFEwm:0.360712763003;RORA:0.326053575888;GFI1:0.301302663405;FOXO1,3,4:0.233586606241;ZNF423:0.204916161862;ZIC1..3:0.175511488692;IRF7:0.141645365403;FOXA2:0.0757174511461;YY1:0.0424862438569;FOX{I1,J2}:0.0235179501448;DMAP1_NCOR{1,2}_SMARC:0.00895351454877;PAX2:-0.00835285830532;NKX3-1:-0.0168973886548;CDX1,2,4:-0.0239320062183;ATF4:-0.04700131223;HSF1,2:-0.0473015053195;NFATC1..3:-0.0712152895731;NFY{A,B,C}:-0.0815008777447;PAX3,7:-0.0981228312954;TBX4,5:-0.19387004622;IKZF1:-0.197684728477;IRF1,2:-0.205544777676;NFE2L2:-0.239417424265;HOX{A6,A7,B6,B7}:-0.269761545089;NKX2-2,8:-0.309458013609;LHX3,4:-0.31899385631;EVI1:-0.352893179741;HIF1A:-0.374862751911;PDX1:-0.378743766596;PAX1,9:-0.379721464853;SPI1:-0.438565636227;XCPE1{core}:-0.454201427984;NANOG{mouse}:-0.489654470546;SNAI1..3:-0.499451868344;VSX1,2:-0.508431841771;CEBPA,B_DDIT3:-0.510306315635;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.541381394471;NFE2:-0.573633404557;bHLH_family:-0.593401393606;NFE2L1:-0.593962262551;SPIB:-0.773790438322;ATF6:-0.828131635139;PITX1..3:-0.841707855247;GATA6:-0.857117611784;ETS1,2:-0.892440251973;HNF1A:-1.08298719315;FOSL2:-1.09780370055;BACH2:-1.09796329324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10061134445;TP53:-1.11527422237;PAX8:-1.1203964022;TAL1_TCF{3,4,12}:-1.15113326937;NR1H4:-1.16043439201;HNF4A_NR2F1,2:-1.16901134883;E2F1..5:-1.16962458757;TEAD1:-1.17147478625;FOS_FOS{B,L1}_JUN{B,D}:-1.17437381625;NR5A1,2:-1.27283139839;TFCP2:-1.29641899602;NFKB1_REL_RELA:-1.2990395968;POU2F1..3:-1.31651341592;RUNX1..3:-1.34097578894;TFAP4:-1.34986647471;GLI1..3:-1.4068071297;RXRA_VDR{dimer}:-1.48754516291;ALX4:-1.48816839285;ELK1,4_GABP{A,B1}:-1.51402212844;NKX2-1,4:-1.51711454897;ZNF148:-1.52000673373;HLF:-1.55388989862;ELF1,2,4:-1.55756250677;RXR{A,B,G}:-1.58633605086;PPARG:-1.62084288297;TBP:-1.68060687906;MYB:-1.75860180603;ESR1:-1.77772562245;SRF:-2.00214295858;STAT5{A,B}:-2.06802130965;HOX{A5,B5}:-2.30642319125;NR6A1:-2.36367092512;EN1,2:-2.53523135548;HES1:-2.75754948935 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10157-103A4;search_select_hide=table117:FF:10157-103A4 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | parietal lobe, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12317 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12317
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12317
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0594 |
| 10 | 10 | 0.0553 |
| 100 | 100 | 0.308 |
| 101 | 101 | 0.573 |
| 102 | 102 | 0.866 |
| 103 | 103 | 0.13 |
| 104 | 104 | 0.125 |
| 105 | 105 | 0.127 |
| 106 | 106 | 0.0433 |
| 107 | 107 | 0.0941 |
| 108 | 108 | 0.965 |
| 109 | 109 | 0.00245 |
| 11 | 11 | 0.0124 |
| 110 | 110 | 0.0458 |
| 111 | 111 | 0.202 |
| 112 | 112 | 0.49 |
| 113 | 113 | 0.577 |
| 114 | 114 | 0.204 |
| 115 | 115 | 0.942 |
| 116 | 116 | 0.138 |
| 117 | 117 | 0.0103 |
| 118 | 118 | 0.13 |
| 119 | 119 | 0.225 |
| 12 | 12 | 0.46 |
| 120 | 120 | 0.252 |
| 121 | 121 | 0.276 |
| 122 | 122 | 0.859 |
| 123 | 123 | 0.62 |
| 124 | 124 | 0.0833 |
| 125 | 125 | 0.213 |
| 126 | 126 | 0.0281 |
| 127 | 127 | 0.452 |
| 128 | 128 | 0.157 |
| 129 | 129 | 0.599 |
| 13 | 13 | 5.95659e-4 |
| 130 | 130 | 0.123 |
| 131 | 131 | 0.0591 |
| 132 | 132 | 0.666 |
| 133 | 133 | 0.0812 |
| 134 | 134 | 0.675 |
| 135 | 135 | 0.157 |
| 136 | 136 | 0.00129 |
| 137 | 137 | 0.904 |
| 138 | 138 | 0.968 |
| 139 | 139 | 0.122 |
| 14 | 14 | 0.795 |
| 140 | 140 | 0.57 |
| 141 | 141 | 0.7 |
| 142 | 142 | 0.773 |
| 143 | 143 | 0.0874 |
| 144 | 144 | 0.939 |
| 145 | 145 | 0.102 |
| 146 | 146 | 0.471 |
| 147 | 147 | 0.728 |
| 148 | 148 | 0.205 |
| 149 | 149 | 0.228 |
| 15 | 15 | 0.112 |
| 150 | 150 | 0.154 |
| 151 | 151 | 0.624 |
| 152 | 152 | 0.0768 |
| 153 | 153 | 0.814 |
| 154 | 154 | 0.457 |
| 155 | 155 | 0.75 |
| 156 | 156 | 0.452 |
| 157 | 157 | 0.44 |
| 158 | 158 | 0.227 |
| 159 | 159 | 0.0244 |
| 16 | 16 | 0.0434 |
| 160 | 160 | 0.236 |
| 161 | 161 | 0.23 |
| 162 | 162 | 0.732 |
| 163 | 163 | 0.685 |
| 164 | 164 | 0.0479 |
| 165 | 165 | 0.0452 |
| 166 | 166 | 0.894 |
| 167 | 167 | 0.889 |
| 168 | 168 | 0.426 |
| 169 | 169 | 0.0104 |
| 17 | 17 | 0.133 |
| 18 | 18 | 0.143 |
| 19 | 19 | 0.186 |
| 2 | 2 | 0.851 |
| 20 | 20 | 0.125 |
| 21 | 21 | 0.0627 |
| 22 | 22 | 0.177 |
| 23 | 23 | 0.499 |
| 24 | 24 | 0.0293 |
| 25 | 25 | 0.514 |
| 26 | 26 | 1.51688e-4 |
| 27 | 27 | 0.812 |
| 28 | 28 | 0.608 |
| 29 | 29 | 0.0107 |
| 3 | 3 | 0.0531 |
| 30 | 30 | 0.974 |
| 31 | 31 | 0.856 |
| 32 | 32 | 0.0266 |
| 33 | 33 | 0.0477 |
| 34 | 34 | 0.606 |
| 35 | 35 | 0.679 |
| 36 | 36 | 0.168 |
| 37 | 37 | 0.0391 |
| 38 | 38 | 0.363 |
| 39 | 39 | 0.232 |
| 4 | 4 | 0.783 |
| 40 | 40 | 0.0239 |
| 41 | 41 | 0.289 |
| 42 | 42 | 0.247 |
| 43 | 43 | 0.12 |
| 44 | 44 | 0.203 |
| 45 | 45 | 0.658 |
| 46 | 46 | 0.0832 |
| 47 | 47 | 0.0594 |
| 48 | 48 | 0.049 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.689 |
| 50 | 50 | 0.333 |
| 51 | 51 | 0.388 |
| 52 | 52 | 0.474 |
| 53 | 53 | 0.911 |
| 54 | 54 | 0.332 |
| 55 | 55 | 0.672 |
| 56 | 56 | 0.436 |
| 57 | 57 | 0.377 |
| 58 | 58 | 0.377 |
| 59 | 59 | 0.0773 |
| 6 | 6 | 0.933 |
| 60 | 60 | 0.0749 |
| 61 | 61 | 0.0523 |
| 62 | 62 | 0.23 |
| 63 | 63 | 0.187 |
| 64 | 64 | 0.22 |
| 65 | 65 | 0.28 |
| 66 | 66 | 0.13 |
| 67 | 67 | 0.442 |
| 68 | 68 | 0.0948 |
| 69 | 69 | 0.323 |
| 7 | 7 | 0.0522 |
| 70 | 70 | 0.0494 |
| 71 | 71 | 0.0122 |
| 72 | 72 | 0.4 |
| 73 | 73 | 0.0268 |
| 74 | 74 | 0.781 |
| 75 | 75 | 0.0421 |
| 76 | 76 | 0.472 |
| 77 | 77 | 0.148 |
| 78 | 78 | 0.00284 |
| 79 | 79 | 0.402 |
| 8 | 8 | 0.0551 |
| 80 | 80 | 0.418 |
| 81 | 81 | 0.709 |
| 82 | 82 | 0.634 |
| 83 | 83 | 0.0323 |
| 84 | 84 | 0.666 |
| 85 | 85 | 0.274 |
| 86 | 86 | 0.235 |
| 87 | 87 | 7.28769e-5 |
| 88 | 88 | 0.82 |
| 89 | 89 | 0.408 |
| 9 | 9 | 0.329 |
| 90 | 90 | 0.135 |
| 91 | 91 | 0.921 |
| 92 | 92 | 0.613 |
| 93 | 93 | 0.93 |
| 94 | 94 | 0.206 |
| 95 | 95 | 0.0125 |
| 96 | 96 | 0.838 |
| 97 | 97 | 0.718 |
| 98 | 98 | 0.299 |
| 99 | 99 | 0.51 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12317
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010034 human parietal lobe - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010034 (human parietal lobe - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
