FF:11302-117B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005050 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005050 | ||
|accession_numbers=CAGE;DRX008294;DRR009166;DRZ000591;DRZ001976;DRZ011941;DRZ013326 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037167;DRR041533;DRZ007175 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000254 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.29!194.47!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.46!TP63;;chr11:34642612..34642646,+!p1@EHF!2.13!132.83!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.09!137.46!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.87!72.55!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.85!70.37!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.79!60.28!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.72!51.00!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.28!BNC1;;chr15:101069113..101069169,-!p1@CERS3!1.59!37.64!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.56!39.55!ZNF385A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!34.91!ZBED1;;chr6:10415276..10415341,-!p2@TFAP2A!1.55!41.73!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!50.73!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.00!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.38!35.18!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.35!44.73!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.31!19.36!TFAP2A;;chr3:111314230..111314241,-!p2@ZBED2!1.28!18.27!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!1.23!146.46!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.23!15.82!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.21!15.27!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.20!67.10!HMGA2;;chr4:57547454..57547469,-!p1@HOPX!1.20!14.73!HOPX;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.28!SNAI2;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.09!GRHL2;;chr8:49833978..49833996,-!p1@SNAI2!1.13!254.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.13!34.64!EPAS1;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.73!PITX1;;chr11:34645791..34645836,+!p3@EHF!1.10!11.73!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.46!HMGA2;;chr17:80797886..80797906,-!p1@ZNF750!1.03!9.82!ZNF750;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.55!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!78.55!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.98!11.73!CENPT;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.64!ARNTL2;;chr15:83953373..83953386,-!p2@BNC1!0.96!8.18!BNC1;;chr12:66218003..66218018,+!p9@HMGA2!0.95!9.82!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.94!22.09!POU2F2;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.64!IRF6;;chr6:34524093..34524135,-!p1@SPDEF!0.94!7.64!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.64!TBX1;;chr1:24645832..24645853,+!p1@GRHL3!0.91!7.09!GRHL3;;chr3:141121847..141121868,+!p5@ZBTB38!0.90!10.91!ZBTB38;;chr2:122042770..122042785,-!p1@TFCP2L1!0.89!6.82!TFCP2L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.82!TFAP2A;;chr1:158979792..158979814,+!p2@IFI16!0.87!65.19!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.86!8.18!TFAP2C;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.73!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.73!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.83!5.73!C14orf43;;chr11:65686802..65686818,+!p6@DRAP1!0.82!10.09!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.82!8.46!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.82!DRAP1;;chr12:66218923..66218934,+!p14@HMGA2!0.81!5.45!HMGA2;;chr17:45928521..45928539,-!p1@SP6!0.81!5.45!SP6;;chr13:73633131..73633149,+!p1@KLF5!0.80!62.19!KLF5;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.73!KLF7;;chr12:48298765..48298783,-!p2@VDR!0.80!11.73!VDR;;chr17:41623692..41623715,-!p1@ETV4!0.79!24.00!ETV4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.78!67.37!ZC3H12A;;chr21:36421535..36421610,-!p2@RUNX1!0.77!18.82!RUNX1;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.91!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.77!4.91!GRHL3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.91!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.77!4.91!TFAP2A;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.64!ZNF323;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.64!FOXD1;;chr12:66218573..66218596,+!p7@HMGA2!0.74!7.09!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.74!6.82!ZNF460;;chr19:9811347..9811351,-!p1@ZNF812!0.73!4.36!ZNF812;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.82!HMGA2;;chr11:129245526..129245553,+!p1@BARX2!0.71!4.09!BARX2;;chr3:189507460..189507471,+!p3@TP63!0.71!4.09!TP63;;chr15:67458861..67458879,+!p17@SMAD3!0.71!4.09!SMAD3;;chr2:70142232..70142251,+!p1@MXD1!0.70!25.64!MXD1;;chr16:79634624..79634642,-!p1@MAF!0.69!17.18!MAF;;chr2:231084639..231084654,-!p2@SP110!0.69!6.82!SP110;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.36!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.68!3.82!IRX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.68!3.82!TFAP2A;;chr7:139762578..139762589,-!p2@PARP12!0.68!3.82!PARP12;;chr15:101069102..101069112,-!p2@CERS3!0.68!3.82!CERS3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.67!6.27!ZC3H11A;;chr12:77459306..77459365,-!p1@E2F7!0.66!52.09!E2F7;;chr17:70117153..70117174,+!p1@SOX9!0.66!43.09!SOX9;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.27!IFI16;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.73!ETV4;;chr15:67418047..67418093,+!p4@SMAD3!0.66!4.64!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.55!FOXL1;;chr3:32023232..32023273,+!p1@ZNF860!0.65!5.18!ZNF860;;chr12:66218152..66218174,+!p10@HMGA2!0.63!3.55!HMGA2;;chr15:101069186..101069200,-!p4@CERS3!0.63!3.27!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.63!3.27!SP6;;chr6:34524049..34524089,-!p2@SPDEF!0.63!3.27!SPDEF;;chr11:65667846..65667868,-!p1@FOSL1!0.62!101.19!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.62!25.91!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.62!7.36!PCBP1;;chr14:21566731..21566836,-!p1@ZNF219!0.61!39.55!ZNF219;;chr12:96588219..96588263,+!p2@ELK3!0.60!25.64!ELK3;;chr12:27485823..27485868,+!p2@ARNTL2!0.60!14.18!ARNTL2;;chr17:41622765..41622821,-!p2@ETV4!0.60!4.91!ETV4;;chr15:67458836..67458859,+!p22@SMAD3!0.60!3.00!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.60!3.00!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.60!3.00!SPDEF;;chr12:66357214..66357233,+!p13@HMGA2!0.60!3.00!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.60!3.00!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.60!3.00!FOXL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.60!3.00!ZBTB38;;chr3:189507523..189507535,+!p5@TP63!0.60!3.00!TP63;;chr12:48298785..48298828,-!p1@VDR!0.59!18.55!VDR;;chr6:126240380..126240430,+!p2@NCOA7!0.59!8.73!NCOA7;;chr17:3571863..3571881,-!p1@TAX1BP3!0.58!249.56!TAX1BP3;;chr16:54320158..54320200,-!p5@IRX3!0.58!4.36!IRX3;;chr18:3449720..3449749,+!p2@TGIF1!0.57!6.55!TGIF1;;chrX:56258844..56258882,+!p1@KLF8!0.57!4.09!KLF8;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.73!BNC1;;chr16:67881617..67881626,-!p6@CENPT!0.57!2.73!CENPT;;chr16:67881647..67881663,-!p3@CENPT!0.57!2.73!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.57!2.73!ETV4;;chr5:1887052..1887065,-!p2@IRX4!0.57!2.73!IRX4;;chr11:65554528..65554546,+!p1@OVOL1!0.57!2.73!OVOL1;;chr2:46524878..46524891,+!p3@EPAS1!0.56!5.18!EPAS1;;chr16:68573640..68573660,+!p3@ZFP90!0.56!3.82!ZFP90;;chr2:60780607..60780624,-!p2@BCL11A!0.55!9.27!BCL11A;;chr19:58326246..58326262,-!p2@ZNF552!0.55!7.09!ZNF552;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.27!TBX18;;chr10:3827389..3827408,-!p1@KLF6!0.54!242.47!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!0.54!15.82!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.54!5.18!AEBP1;;chr6:28048343..28048354,+!p1@ZNF165!0.54!2.45!ZNF165;;chr6:28321909..28321965,-!p3@ZNF323!0.54!2.45!ZNF323;;chr4:299227..299272,-!p1@ZNF732!0.54!2.45!ZNF732;;chr16:31076332..31076388,-!p3@ZNF668!0.54!2.45!ZNF668;;chr17:48072574..48072597,-!p1@DLX3!0.54!2.45!DLX3;;chr17:7492979..7492991,-!p5@SOX15!0.54!2.45!SOX15;;chr20:55205825..55205847,+!p2@TFAP2C!0.54!2.45!TFAP2C;;chr13:41593425..41593480,-!p1@ELF1!0.53!19.36!ELF1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.53!12.27!LRRFIP2;;chr19:37341160..37341194,-!p2@ZNF790!0.53!6.00!ZNF790;;chr19:53496768..53496799,-!p1@ZNF702P!0.53!4.09!ZNF702P;;chr15:67418119..67418162,+!p5@SMAD3!0.53!2.73!SMAD3;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.00!IFI16;;chr6:126240356..126240379,+!p7@NCOA7!0.52!3.00!NCOA7;;chr6:21593973..21593988,+!p1@SOX4!0.51!105.28!SOX4;;chr6:106534192..106534224,+!p1@PRDM1!0.51!7.64!PRDM1;;chr2:10091815..10091864,+!p1@GRHL1!0.51!3.27!GRHL1;;chr10:51572408..51572454,+!p3@NCOA4!0.50!16.36!NCOA4;;chr4:87857474..87857489,+!p7@AFF1!0.50!4.36!AFF1;;chr2:46612891..46612907,+!p10@EPAS1!0.50!2.18!EPAS1;;chr4:111558135..111558198,-!p2@PITX2!0.50!2.18!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.50!2.18!ZNF365;;chr1:2461692..2461710,-!p1@HES5!0.50!2.18!HES5;;chr20:22565185..22565223,-!p3@FOXA2!0.50!2.18!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.50!2.18!ZFP64;;chr2:85360499..85360598,+!p1@TCF7L1!0.49!15.27!TCF7L1;;chr6:15246200..15246214,+!p2@JARID2!0.49!7.09!JARID2;;chr12:96588279..96588299,+!p4@ELK3!0.48!12.55!ELK3;;chr6:1312325..1312340,+!p1@FOXQ1!0.48!3.82!FOXQ1;;chr20:6748325..6748352,+!p1@BMP2!0.48!3.27!BMP2;;chr3:5021026..5021035,+!p5@BHLHE40!0.48!2.73!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.47!25.64!HIF1A;;chr12:66218443..66218461,+!p8@HMGA2!0.47!2.73!HMGA2;;chr11:47236584..47236679,+!p1@DDB2!0.46!28.09!DDB2;;chr22:42229210..42229229,+!p3@SREBF2!0.46!5.45!SREBF2;;chr16:79634595..79634620,-!p2@MAF!0.46!4.09!MAF;;chr21:36260295..36260310,-!p3@RUNX1!0.46!3.55!RUNX1;;chr19:42636625..42636632,-!p2@POU2F2!0.46!1.91!POU2F2;;chr1:24646263..24646277,+!p4@GRHL3!0.46!1.91!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.91!OVOL2;;chr11:34643638..34643667,+!p8@EHF!0.46!1.91!EHF;;chr12:66357317..66357328,+!p19@HMGA2!0.46!1.91!HMGA2;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.91!PITX1;;chr5:139492456..139492489,+!p7@PURA!0.46!1.91!PURA;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.91!TFAP2A;;chr8:102504979..102505010,+!p2@GRHL2!0.46!1.91!GRHL2;;chrX:56258900..56258917,+!p4@KLF8!0.46!1.91!KLF8;;chr3:69811858..69811881,+!p5@MITF!0.46!1.91!MITF;;chr12:80084303..80084332,-!p1@PAWR!0.45!14.46!PAWR;;chr19:45579725..45579743,-!p1@ZNF296!0.45!10.91!ZNF296;;chr19:9785724..9785740,-!p2@ZNF562!0.45!9.55!ZNF562;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.64!LYAR;;chr5:43067636..43067674,+!p6@ZNF131!0.45!2.73!ZNF131;;chr1:151032739..151032748,+!p6@MLLT11!0.45!2.45!MLLT11;;chr1:151032782..151032801,+!p4@MLLT11!0.44!4.36!MLLT11;;chr6:21597514..21597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2F2!0.13!0.82!NR2F2;;chr12:80083722..80083766,-!p12@PAWR!0.13!0.82!PAWR;;chr13:41635486..41635497,-!p11@ELF1!0.13!0.82!ELF1;;chr2:176033027..176033050,-!p3@ATF2!0.13!0.82!ATF2;;chr2:192015701..192015743,-!p1@STAT4!0.13!0.82!STAT4;;chr3:170075124..170075136,+!p4@SKIL!0.13!0.82!SKIL;;chr2:176033054..176033065,-!p4@ATF2!0.13!0.55!ATF2;;chr4:81105027..81105039,+!p3@PRDM8!0.13!0.55!PRDM8;;chr20:44600184..44600198,-!p6@ZNF335!0.13!0.55!ZNF335;;chr10:3824229..3824253,-!p7@KLF6!0.13!0.55!KLF6;;chr11:65430535..65430549,-!p4@RELA!0.13!0.55!RELA;;chr6:20402070..20402082,+!p5@E2F3!0.13!0.55!E2F3;;chr6:44355325..44355340,+!p4@CDC5L!0.13!0.55!CDC5L;;chr7:99679311..99679322,-!p3@ZNF3!0.13!0.55!ZNF3;;chr12:56753869..56753930,-!p1@STAT2!0.12!52.91!STAT2;;chr2:176032843..176032941,-!p1@ATF2!0.12!48.28!ATF2;;chr14:24630465..24630531,+!p1@IRF9!0.12!45.55!IRF9;;chrX:53254373..53254406,-!p1@KDM5C!0.12!43.64!KDM5C;;chr14:89029366..89029425,+!p1@ZC3H14!0.12!27.55!ZC3H14;;chr3:71114066..71114114,-!p1@FOXP1!0.12!24.00!FOXP1;;chr1:67390665..67390698,+!p1@MIER1!0.12!15.82!MIER1;;chr18:32870260..32870293,+!p1@ZNF271!0.12!14.46!ZNF271;;chr4:95128748..95128794,+!p1@SMARCAD1!0.12!14.18!SMARCAD1;;chr6:41514305..41514359,+!p2@FOXP4!0.12!9.27!FOXP4;;chr14:74226961..74227020,-!p1@C14orf43!0.12!7.09!C14orf43;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.12!6.82!SNAPC4;;chr16:30537839..30537929,-!p1@ZNF768!0.12!6.82!ZNF768;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.12!4.64!TAL1;;chr19:12251144..12251181,-!p2@ZNF20!0.12!4.36!ZNF20;;chr18:5296001..5296045,-!p1@ZFP161!0.12!3.82!ZFP161;;chr12:54019757..54019804,-!p2@ATF7!0.12!3.82!ATF7;;chr2:174828836..174828885,-!p5@SP3!0.12!3.55!SP3;;chr8:37963407..37963454,+!p2@ASH2L!0.12!2.73!ASH2L;;chr8:116681409..116681431,-!p2@TRPS1!0.12!2.45!TRPS1;;chr8:67525473..67525518,-!p1@MYBL1!0.12!1.91!MYBL1;;chr11:64073006..64073017,+!p3@ESRRA!0.12!1.91!ESRRA;;chr1:935398..935465,-!p2@HES4!0.12!1.64!HES4;;chr19:15560730..15560772,-!p3@WIZ!0.12!1.64!WIZ;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.12!1.64!ZNF322;;chr8:42698494..42698507,-!p3@THAP1!0.12!1.36!THAP1;;chr1:200379180..200379191,-!p3@ZNF281!0.12!1.36!ZNF281;;chr3:185826814..185826825,-!p3@ETV5!0.12!1.36!ETV5;;chr15:56535468..56535521,-!p2@RFX7!0.12!1.36!RFX7;;chr15:100106670..100106697,+!p4@MEF2A!0.12!1.09!MEF2A;;chr15:96875657..96875760,+!p14@NR2F2!0.12!1.09!NR2F2;;chr16:68119440..68119480,+!p4@NFATC3!0.12!1.09!NFATC3;;chr19:12551785..12551823,-!p1@ZNF443!0.12!1.09!ZNF443;;chr1:27022578..27022589,+!p5@ARID1A!0.12!1.09!ARID1A;;chr6:21594845..21594908,+!p6@SOX4!0.12!1.09!SOX4;;chr7:86782094..86782108,+!p5@DMTF1!0.12!1.09!DMTF1;;chr10:21823381..21823399,+!p4@MLLT10!0.12!1.09!MLLT10;;chr10:3824332..3824425,-!p4@KLF6!0.12!1.09!KLF6;;chr12:6798692..6798723,-!p5@ZNF384!0.12!1.09!ZNF384;;chr2:231084723..231084734,-!p4@SP110!0.12!1.09!SP110;;chr6:108882364..108882391,+!p4@FOXO3!0.12!0.82!FOXO3;;chr7:104752306..104752335,+!p4@MLL5!0.12!0.82!MLL5;;chr15:67358128..67358133,+!p12@SMAD3!0.12!0.82!SMAD3;;chr19:53324884..53324886,-!p1@ZNF28!0.12!0.82!ZNF28;;chr1:42800614..42800649,-!p5@FOXJ3!0.12!0.82!FOXJ3;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.12!0.55!ZNF551;;chr1:235491168..235491187,-!p3@ARID4B!0.12!0.55!ARID4B;;chr15:96869222..96869251,+!p18@NR2F2!0.12!0.55!NR2F2;;chr17:38256695..38256706,-!p7@NR1D1!0.12!0.55!NR1D1;;chr19:36545320..36545335,-!p5@THAP8!0.12!0.55!THAP8;;chr4:81104958..81104981,+!p5@PRDM8!0.12!0.55!PRDM8;;chr5:72743793..72743855,-!p4@FOXD1!0.12!0.55!FOXD1;;chr7:111846777..111846804,+!p2@ZNF277!0.12!0.55!ZNF277;;chr7:77428282..77428293,+!p4@PHTF2!0.12!0.55!PHTF2;;chr9:110250697..110250738,-!p2@KLF4!0.12!0.55!KLF4;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor2%2520%2528GEA14%2529.CNhs11896.11302-117B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11302-117B6 | |id=FF:11302-117B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000254 | ||
|is_obsolete= | |||
|library_id=CNhs11896 | |||
|library_id_phase_based=2:CNhs11896 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11302 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.ACAGTG.11302 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11302 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.ACAGTG.11302 | |||
|name=Gingival epithelial cells, donor2 (GEA14) | |name=Gingival epithelial cells, donor2 (GEA14) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11896,LSID834,release010,COMPLETED | |profile_hcage=CNhs11896,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.0523708909774295,0,0,0.160032779752338,0.104741781954859,0.261050104183376,-0.282403560576942,0,0,0,0,0,0,0,0,0.259650816408929,0,0.791141385265455,0,0,-0.0485812283935684,0,0,0,0.269206118188445,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.92242156638749,0,0.0362965822158815,0,0,0,1.11397105627074,0,0,0,0,0.07031839344757,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.0917232019077114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104741781954859,0,0,0,0,0,0,0.0186007921656478,0,0,0,0,0,0,0,-0.0225481731538968,0.104166677953069,0.0523708909774295,0.189066829120808,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0334518142820037,0,0,0,0.150924886300781,0.465214392761809,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117B6 | |rna_tube_id=117B6 | ||
|rna_weight_ug=8.12834 | |rna_weight_ug=8.12834 | ||
|rnaseq_library_id=SRhi10011.ACAGTG | |||
|sample_age=38 | |sample_age=38 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.4531100516587e-225!GO:0005737;cytoplasm;6.08099335744376e-208!GO:0043226;organelle;4.38163988148569e-166!GO:0043229;intracellular organelle;1.79103032830228e-165!GO:0043231;intracellular membrane-bound organelle;6.85705798144982e-151!GO:0043227;membrane-bound organelle;9.86987374232148e-151!GO:0044444;cytoplasmic part;2.49210922699764e-135!GO:0044422;organelle part;1.62715975907798e-134!GO:0044446;intracellular organelle part;5.15065327119291e-133!GO:0032991;macromolecular complex;8.35181127313116e-88!GO:0005515;protein binding;3.29557528016639e-79!GO:0030529;ribonucleoprotein complex;3.34028373318407e-76!GO:0044238;primary metabolic process;8.95390940232485e-73!GO:0044237;cellular metabolic process;1.44474427234001e-70!GO:0043170;macromolecule metabolic process;3.67421613002118e-65!GO:0043233;organelle lumen;1.82204843511517e-61!GO:0031974;membrane-enclosed lumen;1.82204843511517e-61!GO:0005739;mitochondrion;1.27908682442068e-60!GO:0003723;RNA binding;7.524371468625e-58!GO:0019538;protein metabolic process;9.39928020509986e-58!GO:0044428;nuclear part;4.51343272423322e-57!GO:0031090;organelle membrane;4.32311086718845e-53!GO:0044267;cellular protein metabolic process;1.2857230464813e-49!GO:0044260;cellular macromolecule metabolic process;2.73061193827926e-49!GO:0006412;translation;1.95122633885668e-47!GO:0015031;protein transport;1.95122633885668e-47!GO:0016043;cellular component organization and biogenesis;2.40667432476651e-47!GO:0005634;nucleus;4.49319048337178e-47!GO:0033036;macromolecule localization;5.37503830193699e-47!GO:0005840;ribosome;6.04795163579895e-47!GO:0043234;protein complex;1.77427472794952e-44!GO:0045184;establishment of protein localization;1.91620796462406e-44!GO:0008104;protein localization;8.4229722536095e-44!GO:0005829;cytosol;4.69245782046431e-42!GO:0009058;biosynthetic process;4.26715268338378e-41!GO:0003735;structural constituent of ribosome;4.26715268338378e-41!GO:0044429;mitochondrial part;1.74917497282272e-40!GO:0006396;RNA processing;2.21806686615558e-40!GO:0046907;intracellular transport;3.03164092086244e-39!GO:0009059;macromolecule biosynthetic process;1.06742070791085e-37!GO:0043228;non-membrane-bound organelle;1.23132012097802e-37!GO:0043232;intracellular non-membrane-bound organelle;1.23132012097802e-37!GO:0044249;cellular biosynthetic process;2.81717701064353e-36!GO:0031967;organelle envelope;5.81799751645912e-36!GO:0031975;envelope;1.37568766760897e-35!GO:0031981;nuclear lumen;4.47061811439361e-35!GO:0033279;ribosomal subunit;2.49057109271578e-34!GO:0016071;mRNA metabolic process;8.80836744214734e-33!GO:0006886;intracellular protein transport;9.59120934968742e-33!GO:0065003;macromolecular complex assembly;1.11280503353764e-32!GO:0008380;RNA splicing;1.65205099540263e-30!GO:0043283;biopolymer metabolic process;1.7226688879551e-30!GO:0022607;cellular component assembly;3.85685020498742e-29!GO:0006996;organelle organization and biogenesis;1.21255967211759e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.79451607720455e-28!GO:0006397;mRNA processing;1.19347132924495e-27!GO:0051649;establishment of cellular localization;1.76963919261157e-26!GO:0051641;cellular localization;2.2390372378812e-26!GO:0005740;mitochondrial envelope;7.8606216992391e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.478038843126e-24!GO:0031966;mitochondrial membrane;4.04687220256968e-24!GO:0010467;gene expression;4.04687220256968e-24!GO:0012505;endomembrane system;5.58386298525718e-24!GO:0005783;endoplasmic reticulum;4.23576314817783e-23!GO:0019866;organelle inner membrane;1.1708718318017e-22!GO:0005681;spliceosome;9.15134197307618e-22!GO:0044445;cytosolic part;1.52090925170202e-21!GO:0005743;mitochondrial inner membrane;2.25540960382718e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.85152973915053e-21!GO:0005654;nucleoplasm;4.23705882338336e-20!GO:0006119;oxidative phosphorylation;5.0025608806614e-20!GO:0000166;nucleotide binding;9.76417537343405e-20!GO:0005794;Golgi apparatus;1.46831621803963e-19!GO:0016462;pyrophosphatase activity;2.11474584991586e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.45636716003422e-19!GO:0006457;protein folding;3.40399041768634e-19!GO:0048770;pigment granule;3.6858447908944e-19!GO:0042470;melanosome;3.6858447908944e-19!GO:0043285;biopolymer catabolic process;3.6858447908944e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.76747529075817e-19!GO:0017111;nucleoside-triphosphatase activity;6.17008364501654e-19!GO:0016874;ligase activity;2.76505413003603e-18!GO:0007049;cell cycle;3.93304563844484e-18!GO:0012501;programmed cell death;4.874339373327e-18!GO:0044432;endoplasmic reticulum part;5.18433888257231e-18!GO:0044455;mitochondrial membrane part;5.49558963728018e-18!GO:0015935;small ribosomal subunit;8.80989786978155e-18!GO:0031980;mitochondrial lumen;1.05105085802465e-17!GO:0005759;mitochondrial matrix;1.05105085802465e-17!GO:0006915;apoptosis;1.05105085802465e-17!GO:0006259;DNA metabolic process;1.31795388588096e-17!GO:0022618;protein-RNA complex assembly;1.32020538523976e-17!GO:0015934;large ribosomal subunit;1.54147397700539e-17!GO:0009057;macromolecule catabolic process;2.11730525679695e-17!GO:0030163;protein catabolic process;2.77216374195199e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.41322363343362e-17!GO:0044265;cellular macromolecule catabolic process;6.12995218163762e-17!GO:0019941;modification-dependent protein catabolic process;7.03814839741149e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.03814839741149e-17!GO:0006512;ubiquitin cycle;9.66491880297979e-17!GO:0044257;cellular protein catabolic process;1.1401272220834e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55445086808292e-16!GO:0005730;nucleolus;2.7121846725734e-16!GO:0044451;nucleoplasm part;5.52500644131473e-16!GO:0006605;protein targeting;5.64259111004393e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.83595997039775e-16!GO:0008219;cell death;5.83595997039775e-16!GO:0016265;death;5.83595997039775e-16!GO:0048193;Golgi vesicle transport;2.00946466715384e-15!GO:0043412;biopolymer modification;5.60584811436997e-15!GO:0044248;cellular catabolic process;6.19040210988184e-15!GO:0016192;vesicle-mediated transport;1.27400734096148e-14!GO:0051186;cofactor metabolic process;1.28669419560378e-14!GO:0017076;purine nucleotide binding;1.36925397189887e-14!GO:0032553;ribonucleotide binding;1.61929546022144e-14!GO:0032555;purine ribonucleotide binding;1.61929546022144e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.68838260615524e-14!GO:0005746;mitochondrial respiratory chain;4.09177879854793e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.45879238178665e-14!GO:0051082;unfolded protein binding;8.09244586853451e-14!GO:0006464;protein modification process;9.63015701704327e-14!GO:0005761;mitochondrial ribosome;9.86767413156594e-14!GO:0000313;organellar ribosome;9.86767413156594e-14!GO:0005789;endoplasmic reticulum membrane;1.85045798399619e-13!GO:0022402;cell cycle process;3.09585296896667e-13!GO:0008134;transcription factor binding;3.77713179478567e-13!GO:0008135;translation factor activity, nucleic acid binding;4.50251896737113e-13!GO:0050136;NADH dehydrogenase (quinone) activity;5.52244410388492e-13!GO:0003954;NADH dehydrogenase activity;5.52244410388492e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.52244410388492e-13!GO:0006461;protein complex assembly;7.22468819544453e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.45676745056415e-13!GO:0043067;regulation of programmed cell death;1.0786505373215e-12!GO:0042981;regulation of apoptosis;1.30592517145492e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.93439947547285e-12!GO:0000278;mitotic cell cycle;2.8347577156143e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.52538796376973e-12!GO:0006732;coenzyme metabolic process;3.74140736211749e-12!GO:0043687;post-translational protein modification;8.11081284484348e-12!GO:0006413;translational initiation;1.46860539557367e-11!GO:0005524;ATP binding;1.48111288996415e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.7546550634592e-11!GO:0000375;RNA splicing, via transesterification reactions;1.7546550634592e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.7546550634592e-11!GO:0008565;protein transporter activity;2.1525521575861e-11!GO:0009055;electron carrier activity;2.48070493403644e-11!GO:0032559;adenyl ribonucleotide binding;2.96386106601017e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.96386106601017e-11!GO:0042773;ATP synthesis coupled electron transport;2.96386106601017e-11!GO:0030554;adenyl nucleotide binding;3.24855369423976e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.30351931006563e-11!GO:0045271;respiratory chain complex I;3.30351931006563e-11!GO:0005747;mitochondrial respiratory chain complex I;3.30351931006563e-11!GO:0042254;ribosome biogenesis and assembly;3.49211830277906e-11!GO:0006974;response to DNA damage stimulus;3.51901337732203e-11!GO:0009056;catabolic process;4.52609108259145e-11!GO:0008639;small protein conjugating enzyme activity;4.61487463746126e-11!GO:0006913;nucleocytoplasmic transport;5.20176969687566e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.31848448497521e-11!GO:0003743;translation initiation factor activity;6.57338674600965e-11!GO:0005793;ER-Golgi intermediate compartment;7.68008153334155e-11!GO:0004842;ubiquitin-protein ligase activity;8.17590198257809e-11!GO:0019787;small conjugating protein ligase activity;8.29416917556129e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.29416917556129e-11!GO:0005635;nuclear envelope;1.05004186762548e-10!GO:0006446;regulation of translational initiation;1.07754080029772e-10!GO:0051169;nuclear transport;1.08877704944353e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.0594423409226e-10!GO:0000074;regulation of progression through cell cycle;2.28628892648627e-10!GO:0051726;regulation of cell cycle;3.05562075004496e-10!GO:0048523;negative regulation of cellular process;3.58239625807484e-10!GO:0009259;ribonucleotide metabolic process;3.81313154699351e-10!GO:0016881;acid-amino acid ligase activity;5.50546508103679e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.47526347101423e-10!GO:0048475;coated membrane;9.46909302422621e-10!GO:0030117;membrane coat;9.46909302422621e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.73362406129312e-10!GO:0031965;nuclear membrane;1.15957707116086e-09!GO:0005768;endosome;1.36300583153911e-09!GO:0043069;negative regulation of programmed cell death;1.5502775284416e-09!GO:0044431;Golgi apparatus part;1.95979339546625e-09!GO:0006163;purine nucleotide metabolic process;2.5681128438729e-09!GO:0009150;purine ribonucleotide metabolic process;2.59629957629356e-09!GO:0016604;nuclear body;2.72783930681369e-09!GO:0030120;vesicle coat;2.94855212496463e-09!GO:0030662;coated vesicle membrane;2.94855212496463e-09!GO:0044453;nuclear membrane part;3.18837550283854e-09!GO:0009141;nucleoside triphosphate metabolic process;3.47867022841495e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.49130425766375e-09!GO:0043066;negative regulation of apoptosis;4.48000625936311e-09!GO:0051246;regulation of protein metabolic process;6.42124347076241e-09!GO:0003924;GTPase activity;6.7317886246651e-09!GO:0016887;ATPase activity;7.50543882013253e-09!GO:0000087;M phase of mitotic cell cycle;8.16746485426285e-09!GO:0048519;negative regulation of biological process;8.19131218366429e-09!GO:0009260;ribonucleotide biosynthetic process;9.79785509774239e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.82461257385806e-09!GO:0042623;ATPase activity, coupled;1.15050544326495e-08!GO:0007067;mitosis;1.22200261932155e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.2571633580295e-08!GO:0003676;nucleic acid binding;1.2666439589887e-08!GO:0006399;tRNA metabolic process;1.3994630630275e-08!GO:0017038;protein import;1.45732436412477e-08!GO:0006281;DNA repair;1.59742644345268e-08!GO:0006164;purine nucleotide biosynthetic process;2.32083076115236e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.32723593011588e-08!GO:0006916;anti-apoptosis;2.35419775215659e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.54098763914444e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.54098763914444e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.30242536199741e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.4748520433179e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.4748520433179e-08!GO:0015986;ATP synthesis coupled proton transport;4.65748179899515e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.65748179899515e-08!GO:0009719;response to endogenous stimulus;5.1284327975392e-08!GO:0007005;mitochondrion organization and biogenesis;5.61298574358594e-08!GO:0005643;nuclear pore;6.47371317241778e-08!GO:0016787;hydrolase activity;7.01132397183369e-08!GO:0016070;RNA metabolic process;7.33746383131801e-08!GO:0009060;aerobic respiration;7.34533030620875e-08!GO:0004386;helicase activity;8.08207400772249e-08!GO:0051188;cofactor biosynthetic process;8.30368702141781e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.07659849930213e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.07659849930213e-08!GO:0016607;nuclear speck;9.63638251021978e-08!GO:0005694;chromosome;1.66912776857652e-07!GO:0000139;Golgi membrane;1.71155384582091e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.03135382279173e-07!GO:0051301;cell division;2.07835978829253e-07!GO:0003712;transcription cofactor activity;2.10876444165092e-07!GO:0046034;ATP metabolic process;2.26785054165562e-07!GO:0065002;intracellular protein transport across a membrane;2.33266069791533e-07!GO:0022403;cell cycle phase;2.78157200903591e-07!GO:0019829;cation-transporting ATPase activity;3.11980054492431e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.15602071358866e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.15602071358866e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.15602071358866e-07!GO:0045333;cellular respiration;3.45065466068112e-07!GO:0043038;amino acid activation;4.03939383764338e-07!GO:0006418;tRNA aminoacylation for protein translation;4.03939383764338e-07!GO:0043039;tRNA aminoacylation;4.03939383764338e-07!GO:0006364;rRNA processing;4.88208512799081e-07!GO:0005773;vacuole;4.91530675973271e-07!GO:0016072;rRNA metabolic process;5.80238071338365e-07!GO:0051276;chromosome organization and biogenesis;6.32723066168982e-07!GO:0006754;ATP biosynthetic process;7.00260536056121e-07!GO:0006753;nucleoside phosphate metabolic process;7.00260536056121e-07!GO:0006099;tricarboxylic acid cycle;7.00260536056121e-07!GO:0046356;acetyl-CoA catabolic process;7.00260536056121e-07!GO:0048522;positive regulation of cellular process;7.56572311016899e-07!GO:0032446;protein modification by small protein conjugation;8.42044165400487e-07!GO:0007243;protein kinase cascade;8.71143814682022e-07!GO:0008026;ATP-dependent helicase activity;9.14044037930502e-07!GO:0009108;coenzyme biosynthetic process;1.04912111643248e-06!GO:0009967;positive regulation of signal transduction;1.07480333873376e-06!GO:0051170;nuclear import;1.1138974704431e-06!GO:0016567;protein ubiquitination;1.22403866333354e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.32099440223076e-06!GO:0050657;nucleic acid transport;1.38292193264584e-06!GO:0051236;establishment of RNA localization;1.38292193264584e-06!GO:0050658;RNA transport;1.38292193264584e-06!GO:0016491;oxidoreductase activity;1.52501775818485e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.52501775818485e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.53527933298597e-06!GO:0009117;nucleotide metabolic process;1.55197422520474e-06!GO:0044427;chromosomal part;1.61933206608133e-06!GO:0006403;RNA localization;1.62702083166474e-06!GO:0046930;pore complex;1.86410046643143e-06!GO:0006084;acetyl-CoA metabolic process;2.18582832692318e-06!GO:0044440;endosomal part;2.37861830782136e-06!GO:0010008;endosome membrane;2.37861830782136e-06!GO:0031988;membrane-bound vesicle;2.37861830782136e-06!GO:0005525;GTP binding;2.44442710626314e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.50944356702017e-06!GO:0031252;leading edge;2.54011669383159e-06!GO:0000323;lytic vacuole;2.55115722788178e-06!GO:0005764;lysosome;2.55115722788178e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.65173748003737e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.79240008098265e-06!GO:0006606;protein import into nucleus;2.82306500081412e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.21352414556261e-06!GO:0051187;cofactor catabolic process;3.29677905687912e-06!GO:0005798;Golgi-associated vesicle;3.29752945223372e-06!GO:0043623;cellular protein complex assembly;3.4178475794535e-06!GO:0006323;DNA packaging;3.57135478750044e-06!GO:0006366;transcription from RNA polymerase II promoter;4.34829028127477e-06!GO:0000279;M phase;5.53104312637374e-06!GO:0016779;nucleotidyltransferase activity;5.92630460495945e-06!GO:0005770;late endosome;6.38236538274499e-06!GO:0005788;endoplasmic reticulum lumen;6.79266160014336e-06!GO:0009109;coenzyme catabolic process;7.00476193635338e-06!GO:0015630;microtubule cytoskeleton;7.15751507923256e-06!GO:0006752;group transfer coenzyme metabolic process;7.3850968489032e-06!GO:0006260;DNA replication;8.35679883776931e-06!GO:0016740;transferase activity;8.39817975763402e-06!GO:0006613;cotranslational protein targeting to membrane;8.39817975763402e-06!GO:0045259;proton-transporting ATP synthase complex;8.46307345829984e-06!GO:0050794;regulation of cellular process;9.63154382696081e-06!GO:0031982;vesicle;1.05028687085062e-05!GO:0042802;identical protein binding;1.09009053866513e-05!GO:0006793;phosphorus metabolic process;1.20350663458164e-05!GO:0006796;phosphate metabolic process;1.20350663458164e-05!GO:0045786;negative regulation of progression through cell cycle;1.50999855318333e-05!GO:0004298;threonine endopeptidase activity;1.74851844761718e-05!GO:0031410;cytoplasmic vesicle;1.78858417985224e-05!GO:0000785;chromatin;1.95517705784448e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.31409444421817e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.34075959750094e-05!GO:0000245;spliceosome assembly;2.34075959750094e-05!GO:0008654;phospholipid biosynthetic process;2.90077647996523e-05!GO:0005769;early endosome;2.90189194669505e-05!GO:0051028;mRNA transport;3.18123202886476e-05!GO:0030118;clathrin coat;3.35622119904422e-05!GO:0005762;mitochondrial large ribosomal subunit;4.33078156496163e-05!GO:0000315;organellar large ribosomal subunit;4.33078156496163e-05!GO:0065004;protein-DNA complex assembly;4.46732831643458e-05!GO:0007010;cytoskeleton organization and biogenesis;4.7838425149871e-05!GO:0051789;response to protein stimulus;5.67750247465336e-05!GO:0006986;response to unfolded protein;5.67750247465336e-05!GO:0032561;guanyl ribonucleotide binding;5.82239926208642e-05!GO:0019001;guanyl nucleotide binding;5.82239926208642e-05!GO:0045454;cell redox homeostasis;5.84426542819983e-05!GO:0019899;enzyme binding;6.72308013793653e-05!GO:0048468;cell development;6.80374718553658e-05!GO:0030867;rough endoplasmic reticulum membrane;7.79716583066931e-05!GO:0016853;isomerase activity;8.24510653759054e-05!GO:0001726;ruffle;8.52850783704059e-05!GO:0006612;protein targeting to membrane;0.000100471078890819!GO:0016310;phosphorylation;0.00010426910919933!GO:0048518;positive regulation of biological process;0.000112884875677243!GO:0065009;regulation of a molecular function;0.000114811507049454!GO:0043065;positive regulation of apoptosis;0.000114837735072287!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000116652585675531!GO:0003724;RNA helicase activity;0.000120453085621409!GO:0006333;chromatin assembly or disassembly;0.000130195002384615!GO:0030119;AP-type membrane coat adaptor complex;0.000135048392017629!GO:0005813;centrosome;0.000136213579606928!GO:0030036;actin cytoskeleton organization and biogenesis;0.000138801139465292!GO:0048471;perinuclear region of cytoplasm;0.000148178770854067!GO:0043068;positive regulation of programmed cell death;0.000155085380011699!GO:0043021;ribonucleoprotein binding;0.000160284048357823!GO:0008092;cytoskeletal protein binding;0.000161590176562771!GO:0000151;ubiquitin ligase complex;0.000163595446609649!GO:0030658;transport vesicle membrane;0.000172242738948059!GO:0008632;apoptotic program;0.000183951057207903!GO:0016126;sterol biosynthetic process;0.000194326902277446!GO:0031968;organelle outer membrane;0.000195563729002483!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000200409126250903!GO:0006950;response to stress;0.000208715521557693!GO:0005856;cytoskeleton;0.000209993487865534!GO:0003697;single-stranded DNA binding;0.000228249115035262!GO:0005905;coated pit;0.000242755555853409!GO:0016859;cis-trans isomerase activity;0.000245617783252985!GO:0030131;clathrin adaptor complex;0.000259564777695241!GO:0019867;outer membrane;0.000260848131725082!GO:0043566;structure-specific DNA binding;0.000290645274013462!GO:0000314;organellar small ribosomal subunit;0.000294590318899293!GO:0005763;mitochondrial small ribosomal subunit;0.000294590318899293!GO:0006091;generation of precursor metabolites and energy;0.000297507481087126!GO:0007264;small GTPase mediated signal transduction;0.00030162851466648!GO:0005667;transcription factor complex;0.000305018191260655!GO:0005885;Arp2/3 protein complex;0.000309881443251559!GO:0016044;membrane organization and biogenesis;0.000365562061245381!GO:0016197;endosome transport;0.000372558852459221!GO:0005741;mitochondrial outer membrane;0.000372695527038994!GO:0008250;oligosaccharyl transferase complex;0.000390119985429495!GO:0001533;cornified envelope;0.000400052785484185!GO:0005819;spindle;0.000411694901770375!GO:0004576;oligosaccharyl transferase activity;0.000435609829276874!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000476259437423168!GO:0031324;negative regulation of cellular metabolic process;0.000481050670246484!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000485845259556635!GO:0005048;signal sequence binding;0.000509415762854175!GO:0030216;keratinocyte differentiation;0.000530606362969245!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000552460166454624!GO:0005815;microtubule organizing center;0.000555228451114397!GO:0005791;rough endoplasmic reticulum;0.000602035570648753!GO:0006839;mitochondrial transport;0.000604952734222229!GO:0006891;intra-Golgi vesicle-mediated transport;0.000608063380131581!GO:0051427;hormone receptor binding;0.000611104026223655!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000612604084417607!GO:0003713;transcription coactivator activity;0.00063290127853042!GO:0033116;ER-Golgi intermediate compartment membrane;0.000663159490821836!GO:0030660;Golgi-associated vesicle membrane;0.000670440174501894!GO:0016568;chromatin modification;0.000696568720975877!GO:0051168;nuclear export;0.000702974720515758!GO:0030133;transport vesicle;0.000713338359517564!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000760253017297005!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000792460835293318!GO:0030029;actin filament-based process;0.000831507427918874!GO:0051329;interphase of mitotic cell cycle;0.000831890423475934!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00089932787610963!GO:0051920;peroxiredoxin activity;0.000963557788834804!GO:0051252;regulation of RNA metabolic process;0.000995033347237871!GO:0035257;nuclear hormone receptor binding;0.00108969346498313!GO:0030132;clathrin coat of coated pit;0.00110988895951835!GO:0006626;protein targeting to mitochondrion;0.00111063979043891!GO:0018196;peptidyl-asparagine modification;0.00111221214115141!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00111221214115141!GO:0030125;clathrin vesicle coat;0.00111221214115141!GO:0030665;clathrin coated vesicle membrane;0.00111221214115141!GO:0006979;response to oxidative stress;0.00115272293567142!GO:0003899;DNA-directed RNA polymerase activity;0.0011853177352717!GO:0006334;nucleosome assembly;0.00134711154453722!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00135064859383572!GO:0003729;mRNA binding;0.00145806788550439!GO:0003714;transcription corepressor activity;0.00147061409404864!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00149373366513566!GO:0008610;lipid biosynthetic process;0.00161332992319838!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00164562806952902!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00164562806952902!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00164562806952902!GO:0031072;heat shock protein binding;0.00169965361754132!GO:0009165;nucleotide biosynthetic process;0.00170525916119989!GO:0009892;negative regulation of metabolic process;0.00172474252538837!GO:0030663;COPI coated vesicle membrane;0.00178623710970305!GO:0030126;COPI vesicle coat;0.00178623710970305!GO:0015980;energy derivation by oxidation of organic compounds;0.00185654246571198!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00188098739496766!GO:0015399;primary active transmembrane transporter activity;0.00188098739496766!GO:0008186;RNA-dependent ATPase activity;0.00188098739496766!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00190007089842882!GO:0006402;mRNA catabolic process;0.00193177868854919!GO:0008243;plasminogen activator activity;0.00202296071774118!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00210195825247684!GO:0006917;induction of apoptosis;0.00210195825247684!GO:0030176;integral to endoplasmic reticulum membrane;0.0021294714583109!GO:0050789;regulation of biological process;0.0021669986478001!GO:0048500;signal recognition particle;0.0021669986478001!GO:0007088;regulation of mitosis;0.0021820113437242!GO:0046467;membrane lipid biosynthetic process;0.00220542684412432!GO:0030031;cell projection biogenesis;0.00252109045996822!GO:0031497;chromatin assembly;0.00262273451529589!GO:0046489;phosphoinositide biosynthetic process;0.00269387330596538!GO:0051101;regulation of DNA binding;0.00269387330596538!GO:0016363;nuclear matrix;0.00269387330596538!GO:0045045;secretory pathway;0.00273396121592584!GO:0043681;protein import into mitochondrion;0.00275105112050674!GO:0006695;cholesterol biosynthetic process;0.00286688573984668!GO:0016564;transcription repressor activity;0.00293730805161152!GO:0012502;induction of programmed cell death;0.00295584899490948!GO:0008139;nuclear localization sequence binding;0.00310300311214666!GO:0050790;regulation of catalytic activity;0.00317722162487527!GO:0046474;glycerophospholipid biosynthetic process;0.00333827666622828!GO:0006383;transcription from RNA polymerase III promoter;0.00334927480736367!GO:0000075;cell cycle checkpoint;0.00342654815842638!GO:0051098;regulation of binding;0.00348796192738253!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00351550190384095!GO:0000059;protein import into nucleus, docking;0.00351581874700276!GO:0030134;ER to Golgi transport vesicle;0.00365734717518618!GO:0043488;regulation of mRNA stability;0.00365734717518618!GO:0043487;regulation of RNA stability;0.00365734717518618!GO:0051087;chaperone binding;0.00375804513831624!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00393668159246839!GO:0051325;interphase;0.00399690768818371!GO:0006414;translational elongation;0.00414589571408345!GO:0050662;coenzyme binding;0.00423209163531616!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00423209163531616!GO:0006401;RNA catabolic process;0.00435388184018486!GO:0044452;nucleolar part;0.00437429755102697!GO:0015631;tubulin binding;0.00440785942567658!GO:0030137;COPI-coated vesicle;0.00441791883572894!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00464713638713716!GO:0045047;protein targeting to ER;0.00464713638713716!GO:0004004;ATP-dependent RNA helicase activity;0.0046598350791436!GO:0007006;mitochondrial membrane organization and biogenesis;0.0048524615095191!GO:0008637;apoptotic mitochondrial changes;0.00505713889231534!GO:0008283;cell proliferation;0.00509198260581153!GO:0030659;cytoplasmic vesicle membrane;0.00517870202302998!GO:0030127;COPII vesicle coat;0.00521874525815993!GO:0012507;ER to Golgi transport vesicle membrane;0.00521874525815993!GO:0007050;cell cycle arrest;0.00529876327360489!GO:0016563;transcription activator activity;0.00554567891225717!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00554642426675629!GO:0006417;regulation of translation;0.00597097928558305!GO:0007051;spindle organization and biogenesis;0.00613740297456372!GO:0032984;macromolecular complex disassembly;0.00618523083306664!GO:0030880;RNA polymerase complex;0.00621419250317721!GO:0008312;7S RNA binding;0.00623205831548746!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00674215648329972!GO:0005149;interleukin-1 receptor binding;0.00684267099551065!GO:0008234;cysteine-type peptidase activity;0.00690360342754044!GO:0015992;proton transport;0.00697486229361804!GO:0016481;negative regulation of transcription;0.00719937628180399!GO:0032940;secretion by cell;0.00726419331786555!GO:0017166;vinculin binding;0.00738472636715452!GO:0043624;cellular protein complex disassembly;0.00754882604075926!GO:0006818;hydrogen transport;0.00773126203526639!GO:0007034;vacuolar transport;0.00778606410286549!GO:0008033;tRNA processing;0.00812686341645892!GO:0019843;rRNA binding;0.00822768646350179!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00841846440097965!GO:0005774;vacuolar membrane;0.00844587496127619!GO:0022890;inorganic cation transmembrane transporter activity;0.00900207750813395!GO:0005684;U2-dependent spliceosome;0.00944832075694396!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00944832075694396!GO:0006302;double-strand break repair;0.00946628661116479!GO:0006650;glycerophospholipid metabolic process;0.00956477334112212!GO:0035258;steroid hormone receptor binding;0.00957173618978313!GO:0001836;release of cytochrome c from mitochondria;0.00965774073100117!GO:0008047;enzyme activator activity;0.0101195713734066!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0102362744301753!GO:0003690;double-stranded DNA binding;0.0102362744301753!GO:0046483;heterocycle metabolic process;0.0105900739094853!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0108493136565207!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0108493136565207!GO:0043241;protein complex disassembly;0.0109881972812382!GO:0006892;post-Golgi vesicle-mediated transport;0.0110362444957244!GO:0006595;polyamine metabolic process;0.0110362444957244!GO:0008361;regulation of cell size;0.0114187022241535!GO:0030027;lamellipodium;0.0114213740984053!GO:0043022;ribosome binding;0.0118811896943405!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0120029170445282!GO:0000428;DNA-directed RNA polymerase complex;0.0120029170445282!GO:0030833;regulation of actin filament polymerization;0.0120239966673627!GO:0007242;intracellular signaling cascade;0.0120916282544451!GO:0044433;cytoplasmic vesicle part;0.0121413766795593!GO:0048487;beta-tubulin binding;0.0122367407661137!GO:0043492;ATPase activity, coupled to movement of substances;0.0125061308270212!GO:0030521;androgen receptor signaling pathway;0.012582769254883!GO:0006643;membrane lipid metabolic process;0.0126324279257401!GO:0030433;ER-associated protein catabolic process;0.012684415505617!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.012684415505617!GO:0031902;late endosome membrane;0.0127049148248514!GO:0030032;lamellipodium biogenesis;0.013655551191792!GO:0030384;phosphoinositide metabolic process;0.0138755835549177!GO:0051540;metal cluster binding;0.0139589205328211!GO:0051536;iron-sulfur cluster binding;0.0139589205328211!GO:0006984;ER-nuclear signaling pathway;0.0140672081133173!GO:0007398;ectoderm development;0.0141387897013848!GO:0000049;tRNA binding;0.014325856681922!GO:0050750;low-density lipoprotein receptor binding;0.0143495854189915!GO:0006611;protein export from nucleus;0.0143567568809869!GO:0003678;DNA helicase activity;0.0144568981750638!GO:0022411;cellular component disassembly;0.0144568981750638!GO:0051128;regulation of cellular component organization and biogenesis;0.0144579683754552!GO:0007265;Ras protein signal transduction;0.0146884464247292!GO:0003711;transcription elongation regulator activity;0.0146926065839254!GO:0051235;maintenance of localization;0.0146926065839254!GO:0046822;regulation of nucleocytoplasmic transport;0.0149629205749363!GO:0000082;G1/S transition of mitotic cell cycle;0.0151582179269341!GO:0005832;chaperonin-containing T-complex;0.0151669649383075!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0151669649383075!GO:0006509;membrane protein ectodomain proteolysis;0.0151669649383075!GO:0033619;membrane protein proteolysis;0.0151669649383075!GO:0005862;muscle thin filament tropomyosin;0.0152484776530073!GO:0016049;cell growth;0.015441626955669!GO:0016125;sterol metabolic process;0.0155318487518041!GO:0005869;dynactin complex;0.0155499584629781!GO:0005874;microtubule;0.0161269800405861!GO:0030057;desmosome;0.016175811678303!GO:0048144;fibroblast proliferation;0.0165261440465281!GO:0048145;regulation of fibroblast proliferation;0.0165261440465281!GO:0045893;positive regulation of transcription, DNA-dependent;0.0166022623036814!GO:0031901;early endosome membrane;0.0167836165820291!GO:0008022;protein C-terminus binding;0.0174789711046757!GO:0051052;regulation of DNA metabolic process;0.0176086907877683!GO:0043281;regulation of caspase activity;0.0177789885457341!GO:0009116;nucleoside metabolic process;0.01788800910488!GO:0003684;damaged DNA binding;0.0179257196964886!GO:0048146;positive regulation of fibroblast proliferation;0.0179446981762673!GO:0012506;vesicle membrane;0.018265794950846!GO:0006749;glutathione metabolic process;0.0184476203688246!GO:0008180;signalosome;0.0191541620872701!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0192835388023043!GO:0009889;regulation of biosynthetic process;0.0192835388023043!GO:0022406;membrane docking;0.0192835388023043!GO:0048278;vesicle docking;0.0192835388023043!GO:0044437;vacuolar part;0.0192835388023043!GO:0009966;regulation of signal transduction;0.0195672141762483!GO:0044255;cellular lipid metabolic process;0.0196502116880734!GO:0046519;sphingoid metabolic process;0.0199320232184913!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.020150399045487!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0203250664778719!GO:0016251;general RNA polymerase II transcription factor activity;0.020748326422186!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0212920217909949!GO:0000339;RNA cap binding;0.0213422649256411!GO:0000776;kinetochore;0.0213611519380162!GO:0016408;C-acyltransferase activity;0.0214245802273656!GO:0031625;ubiquitin protein ligase binding;0.0214952060897182!GO:0009112;nucleobase metabolic process;0.0216032619892649!GO:0005765;lysosomal membrane;0.0216063349648684!GO:0007041;lysosomal transport;0.0219943629788181!GO:0031529;ruffle organization and biogenesis;0.0225859977476195!GO:0022415;viral reproductive process;0.0232352337004473!GO:0019752;carboxylic acid metabolic process;0.0234961546644534!GO:0035035;histone acetyltransferase binding;0.0235415950979178!GO:0045334;clathrin-coated endocytic vesicle;0.0235902242801453!GO:0006497;protein amino acid lipidation;0.0239026627908043!GO:0044262;cellular carbohydrate metabolic process;0.024319975941851!GO:0000209;protein polyubiquitination;0.0244557246434625!GO:0031326;regulation of cellular biosynthetic process;0.0247031584539542!GO:0006082;organic acid metabolic process;0.0247458986689638!GO:0051287;NAD binding;0.0247458986689638!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0247458986689638!GO:0015002;heme-copper terminal oxidase activity;0.0247458986689638!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0247458986689638!GO:0004129;cytochrome-c oxidase activity;0.0247458986689638!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.024863568750828!GO:0051336;regulation of hydrolase activity;0.0250780687162413!GO:0046426;negative regulation of JAK-STAT cascade;0.025085054289043!GO:0006904;vesicle docking during exocytosis;0.0261295538655472!GO:0030984;kininogen binding;0.0263289205503112!GO:0004213;cathepsin B activity;0.0263289205503112!GO:0006352;transcription initiation;0.0264050857750425!GO:0016272;prefoldin complex;0.0265247924231152!GO:0008538;proteasome activator activity;0.0271001932383339!GO:0016584;nucleosome positioning;0.0272756091265382!GO:0006897;endocytosis;0.0272756091265382!GO:0010324;membrane invagination;0.0272756091265382!GO:0006261;DNA-dependent DNA replication;0.0274713995063023!GO:0051270;regulation of cell motility;0.0274713995063023!GO:0051716;cellular response to stimulus;0.0275123945326102!GO:0042158;lipoprotein biosynthetic process;0.0277216675895563!GO:0051272;positive regulation of cell motility;0.0277216675895563!GO:0040017;positive regulation of locomotion;0.0277216675895563!GO:0007093;mitotic cell cycle checkpoint;0.0278691058823896!GO:0045941;positive regulation of transcription;0.0279046901445569!GO:0030041;actin filament polymerization;0.028920635120981!GO:0004674;protein serine/threonine kinase activity;0.0290578036517646!GO:0006405;RNA export from nucleus;0.0290756425428106!GO:0004197;cysteine-type endopeptidase activity;0.0290906487139866!GO:0032507;maintenance of cellular protein localization;0.0300826341807991!GO:0006118;electron transport;0.0303712649488125!GO:0050681;androgen receptor binding;0.0304725974284739!GO:0008094;DNA-dependent ATPase activity;0.0308602771920446!GO:0000086;G2/M transition of mitotic cell cycle;0.0312769797523538!GO:0030100;regulation of endocytosis;0.0315814442252809!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0317527571412416!GO:0006289;nucleotide-excision repair;0.0317527571412416!GO:0001558;regulation of cell growth;0.0318785370459902!GO:0003756;protein disulfide isomerase activity;0.0321213603882967!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0321213603882967!GO:0006506;GPI anchor biosynthetic process;0.0322002460873586!GO:0031124;mRNA 3'-end processing;0.0325777455035222!GO:0033559;unsaturated fatty acid metabolic process;0.0333132510987801!GO:0006636;unsaturated fatty acid biosynthetic process;0.0333132510987801!GO:0019904;protein domain specific binding;0.0336423362418842!GO:0007052;mitotic spindle organization and biogenesis;0.0337999884222809!GO:0008426;protein kinase C inhibitor activity;0.0341259587607817!GO:0051338;regulation of transferase activity;0.0346386506214162!GO:0030140;trans-Golgi network transport vesicle;0.0346658765184611!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0346658765184611!GO:0012510;trans-Golgi network transport vesicle membrane;0.0346658765184611!GO:0043154;negative regulation of caspase activity;0.034911047696134!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0356311258951666!GO:0007040;lysosome organization and biogenesis;0.0365751690169336!GO:0033673;negative regulation of kinase activity;0.0369677432867983!GO:0006469;negative regulation of protein kinase activity;0.0369677432867983!GO:0005637;nuclear inner membrane;0.0372334952786698!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0375198382210578!GO:0006508;proteolysis;0.0378165528377245!GO:0006505;GPI anchor metabolic process;0.0378229334232471!GO:0007021;tubulin folding;0.0381926401077548!GO:0045767;regulation of anti-apoptosis;0.0383215334857358!GO:0043284;biopolymer biosynthetic process;0.0383215334857358!GO:0048037;cofactor binding;0.0387928908341897!GO:0006376;mRNA splice site selection;0.0396665116260338!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0396665116260338!GO:0000786;nucleosome;0.0396665116260338!GO:0005784;translocon complex;0.0401323845502701!GO:0006644;phospholipid metabolic process;0.0406570189119412!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0406570189119412!GO:0051881;regulation of mitochondrial membrane potential;0.040945033389965!GO:0042770;DNA damage response, signal transduction;0.0410261010187494!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0411013367229687!GO:0016311;dephosphorylation;0.0412863468305403!GO:0006672;ceramide metabolic process;0.041315973247568!GO:0007033;vacuole organization and biogenesis;0.0420048617550605!GO:0040011;locomotion;0.0420443519612502!GO:0006607;NLS-bearing substrate import into nucleus;0.042263266486684!GO:0008544;epidermis development;0.0423402422510538!GO:0031371;ubiquitin conjugating enzyme complex;0.0428375710840307!GO:0007017;microtubule-based process;0.0438243071746277!GO:0009166;nucleotide catabolic process;0.0438472773627714!GO:0007030;Golgi organization and biogenesis;0.0438914265449026!GO:0045936;negative regulation of phosphate metabolic process;0.0441809205718478!GO:0030508;thiol-disulfide exchange intermediate activity;0.0469690808110833!GO:0008601;protein phosphatase type 2A regulator activity;0.0478060750888052!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0480523506681594!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0480523506681594!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0480523506681594!GO:0005912;adherens junction;0.0485440690732789!GO:0045185;maintenance of protein localization;0.048919394764709!GO:0007032;endosome organization and biogenesis;0.0489449863159735!GO:0030911;TPR domain binding;0.0491766150536636!GO:0033130;acetylcholine receptor binding;0.0493833457440042!GO:0051348;negative regulation of transferase activity;0.0495584474224584!GO:0006458;'de novo' protein folding;0.049628529552232!GO:0051084;'de novo' posttranslational protein folding;0.049628529552232!GO:0040012;regulation of locomotion;0.0496601297194536 | |||
|sample_id=11302 | |sample_id=11302 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485 | |top_motifs=TBX4,5:2.6401877337;TP53:2.45249333476;TEF:2.04943246404;ADNP_IRX_SIX_ZHX:2.00698300556;ZEB1:1.6018457671;NKX2-2,8:1.32017621967;SNAI1..3:1.24745644636;PPARG:1.21406030821;TEAD1:1.19052471325;NKX2-3_NKX2-5:1.09881676106;TBP:1.03577333692;POU3F1..4:0.99458151611;XCPE1{core}:0.972893192254;ONECUT1,2:0.964136518775;NKX2-1,4:0.906493541125;SP1:0.903754264112;ZNF148:0.864325836704;TFCP2:0.809612891189;STAT5{A,B}:0.798272663843;FOS_FOS{B,L1}_JUN{B,D}:0.757030560152;VSX1,2:0.731228580144;POU1F1:0.668112004939;NKX3-2:0.662514043442;BACH2:0.648840312798;NANOG:0.64763501186;SPZ1:0.628438301275;PDX1:0.616613371994;IRF7:0.584182054836;HAND1,2:0.555296902653;TFAP2{A,C}:0.538074282397;HSF1,2:0.503285405914;PAX4:0.496944482196;FOXM1:0.492130884833;FOSL2:0.463795020594;FOXL1:0.453302062401;ELK1,4_GABP{A,B1}:0.45053784639;MYOD1:0.441365571473;T:0.427042209524;GZF1:0.409749182811;HIF1A:0.403839352327;HMGA1,2:0.400038091255;SMAD1..7,9:0.395517039999;SOX17:0.394191537726;ZIC1..3:0.342774770503;EVI1:0.330094427844;MAZ:0.308527269863;NFIX:0.302924170946;ZNF238:0.285111308486;LMO2:0.270570628272;CDC5L:0.255432443991;TLX1..3_NFIC{dimer}:0.243225392453;NKX3-1:0.228244348174;RBPJ:0.216529053251;HLF:0.208079941775;ARID5B:0.193943850456;IKZF1:0.176182594417;NFIL3:0.158659151447;LHX3,4:0.143364117014;CEBPA,B_DDIT3:0.125907407832;EN1,2:0.108198233514;NFKB1_REL_RELA:0.0981716834168;FOXN1:0.0975560440943;NR1H4:0.0918450348045;NFE2:0.0895203993532;ZNF143:0.06950604557;GFI1:0.0659442130646;GFI1B:0.05946767067;PITX1..3:0.0578774490188;NFATC1..3:0.0531648582891;CRX:0.0445718962996;SOX2:0.0308891980708;MTF1:0.0177272737178;PAX1,9:-0.00568463354891;ELF1,2,4:-0.00797085948613;HOX{A4,D4}:-0.00860718536708;GLI1..3:-0.0170355476193;UFEwm:-0.0217505008164;PAX2:-0.0226194940199;LEF1_TCF7_TCF7L1,2:-0.0264215929226;REST:-0.0326855557471;EP300:-0.0418546796737;NRF1:-0.0437674660377;POU6F1:-0.0568482379602;AR:-0.0793139617893;POU2F1..3:-0.0805251037165;FOXO1,3,4:-0.0942095882289;ALX4:-0.0948754063476;ZBTB6:-0.10929440304;NFE2L1:-0.115214842425;MYBL2:-0.130330506053;TFDP1:-0.135486425486;KLF4:-0.146928622933;HNF1A:-0.154971303345;OCT4_SOX2{dimer}:-0.16871814355;FOXQ1:-0.180997561653;MTE{core}:-0.190787324975;HES1:-0.19250805413;ETS1,2:-0.194982271481;GTF2I:-0.198512863204;bHLH_family:-0.201931392141;HOXA9_MEIS1:-0.208660285117;EBF1:-0.210480546214;FOXA2:-0.22046467743;SOX{8,9,10}:-0.226694104185;NFY{A,B,C}:-0.235140513411;PAX6:-0.242915574209;JUN:-0.246841060406;PAX5:-0.251545844261;E2F1..5:-0.255845648964;NKX6-1,2:-0.287722570099;GTF2A1,2:-0.29560960748;MYB:-0.302113110628;TFAP2B:-0.303405656221;GCM1,2:-0.304970730304;ATF5_CREB3:-0.305339531978;HOX{A5,B5}:-0.306137606609;IRF1,2:-0.313923777566;NHLH1,2:-0.316583189027;HMX1:-0.325286412396;SPI1:-0.333599698404;ZFP161:-0.341620880268;MED-1{core}:-0.342772517513;NFE2L2:-0.350166105031;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36754884085;ZBTB16:-0.369365427987;SPIB:-0.37819497997;TLX2:-0.381483219181;FOX{F1,F2,J1}:-0.381753673453;YY1:-0.385731588722;ATF4:-0.425821101172;POU5F1:-0.426120961632;RUNX1..3:-0.426941824118;SRF:-0.427733350567;MAFB:-0.431554023587;HIC1:-0.450571688115;GATA6:-0.456882861881;ATF2:-0.459444331272;NR5A1,2:-0.463730259723;FOXP1:-0.49003787295;TAL1_TCF{3,4,12}:-0.504444227155;AIRE:-0.518763339499;HBP1_HMGB_SSRP1_UBTF:-0.526687534823;HNF4A_NR2F1,2:-0.527877602502;PAX8:-0.528411333573;NR3C1:-0.529587548483;PRRX1,2:-0.553871112429;STAT2,4,6:-0.555300089444;TOPORS:-0.567019744994;ZNF423:-0.602744769595;MYFfamily:-0.612083017367;ESR1:-0.637792083999;STAT1,3:-0.647819527836;RFX1:-0.654986214255;ZNF384:-0.665926385892;ATF6:-0.68160886795;RXR{A,B,G}:-0.702976894745;SREBF1,2:-0.707348116526;FOX{D1,D2}:-0.708715358073;CREB1:-0.715471542527;CUX2:-0.726803660974;MEF2{A,B,C,D}:-0.73129967127;TGIF1:-0.736289949116;HOX{A6,A7,B6,B7}:-0.743488940179;RREB1:-0.744402103828;FOX{I1,J2}:-0.745925808881;FOXP3:-0.754342707764;TFAP4:-0.769924620519;DBP:-0.775119290702;DMAP1_NCOR{1,2}_SMARC:-0.802408387358;RFX2..5_RFXANK_RFXAP:-0.808411762978;EGR1..3:-0.818685698308;PRDM1:-0.857820403643;GATA4:-0.867104854449;PAX3,7:-0.872274864773;CDX1,2,4:-0.890706323399;NANOG{mouse}:-0.94017810956;FOXD3:-0.944076121512;MZF1:-0.966193981985;AHR_ARNT_ARNT2:-0.971731640824;PATZ1:-0.979612665741;ALX1:-0.981339690461;NR6A1:-1.03525097813;BPTF:-1.0888570836;ESRRA:-1.1105495516;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.19843969522;RORA:-1.21228174836;BREu{core}:-1.27276894389;PBX1:-1.28833209148;RXRA_VDR{dimer}:-1.44034341702;XBP1:-1.57250488464;SOX5:-1.66777166678;IKZF2:-1.68533166485 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11302-117B6;search_select_hide=table117:FF:11302-117B6 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Gingival epithelial cells, donor2 (GEA14) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11896 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11896
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11896
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.963 |
| 10 | 10 | 0.332 |
| 100 | 100 | 0.555 |
| 101 | 101 | 0.189 |
| 102 | 102 | 0.45 |
| 103 | 103 | 0.13 |
| 104 | 104 | 0.866 |
| 105 | 105 | 0.136 |
| 106 | 106 | 0.151 |
| 107 | 107 | 0.0663 |
| 108 | 108 | 0.824 |
| 109 | 109 | 0.0131 |
| 11 | 11 | 0.249 |
| 110 | 110 | 0.484 |
| 111 | 111 | 0.361 |
| 112 | 112 | 0.156 |
| 113 | 113 | 0.25 |
| 114 | 114 | 0.346 |
| 115 | 115 | 0.534 |
| 116 | 116 | 0.745 |
| 117 | 117 | 0.288 |
| 118 | 118 | 0.871 |
| 119 | 119 | 0.361 |
| 12 | 12 | 0.891 |
| 120 | 120 | 0.102 |
| 121 | 121 | 0.292 |
| 122 | 122 | 0.54 |
| 123 | 123 | 0.792 |
| 124 | 124 | 0.0655 |
| 125 | 125 | 0.249 |
| 126 | 126 | 0.348 |
| 127 | 127 | 0.224 |
| 128 | 128 | 0.941 |
| 129 | 129 | 0.103 |
| 13 | 13 | 0.0415 |
| 130 | 130 | 0.718 |
| 131 | 131 | 0.489 |
| 132 | 132 | 0.34 |
| 133 | 133 | 0.0071 |
| 134 | 134 | 0.279 |
| 135 | 135 | 0.636 |
| 136 | 136 | 0.0307 |
| 137 | 137 | 0.117 |
| 138 | 138 | 0.923 |
| 139 | 139 | 0.367 |
| 14 | 14 | 0.838 |
| 140 | 140 | 0.678 |
| 141 | 141 | 0.806 |
| 142 | 142 | 0.708 |
| 143 | 143 | 0.471 |
| 144 | 144 | 0.224 |
| 145 | 145 | 0.12 |
| 146 | 146 | 0.0138 |
| 147 | 147 | 0.114 |
| 148 | 148 | 0.855 |
| 149 | 149 | 0.825 |
| 15 | 15 | 0.881 |
| 150 | 150 | 0.0709 |
| 151 | 151 | 0.573 |
| 152 | 152 | 0.00639 |
| 153 | 153 | 0.971 |
| 154 | 154 | 0.982 |
| 155 | 155 | 0.827 |
| 156 | 156 | 0.991 |
| 157 | 157 | 0.136 |
| 158 | 158 | 0.117 |
| 159 | 159 | 0.476 |
| 16 | 16 | 0.0639 |
| 160 | 160 | 0.625 |
| 161 | 161 | 0.656 |
| 162 | 162 | 0.309 |
| 163 | 163 | 0.494 |
| 164 | 164 | 0.898 |
| 165 | 165 | 0.489 |
| 166 | 166 | 0.37 |
| 167 | 167 | 0.0877 |
| 168 | 168 | 0.2 |
| 169 | 169 | 0.11 |
| 17 | 17 | 0.342 |
| 18 | 18 | 0.414 |
| 19 | 19 | 0.701 |
| 2 | 2 | 0.442 |
| 20 | 20 | 0.575 |
| 21 | 21 | 0.678 |
| 22 | 22 | 0.591 |
| 23 | 23 | 0.15 |
| 24 | 24 | 0.0259 |
| 25 | 25 | 0.944 |
| 26 | 26 | 0.732 |
| 27 | 27 | 0.698 |
| 28 | 28 | 0.522 |
| 29 | 29 | 0.871 |
| 3 | 3 | 0.38 |
| 30 | 30 | 0.143 |
| 31 | 31 | 0.912 |
| 32 | 32 | 0.327 |
| 33 | 33 | 0.147 |
| 34 | 34 | 0.587 |
| 35 | 35 | 0.0725 |
| 36 | 36 | 0.563 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.506 |
| 39 | 39 | 0.167 |
| 4 | 4 | 0.932 |
| 40 | 40 | 0.0763 |
| 41 | 41 | 0.742 |
| 42 | 42 | 0.432 |
| 43 | 43 | 0.615 |
| 44 | 44 | 0.923 |
| 45 | 45 | 0.0209 |
| 46 | 46 | 0.721 |
| 47 | 47 | 0.317 |
| 48 | 48 | 0.121 |
| 49 | 49 | 0.479 |
| 5 | 5 | 0.904 |
| 50 | 50 | 0.42 |
| 51 | 51 | 0.826 |
| 52 | 52 | 0.0833 |
| 53 | 53 | 0.526 |
| 54 | 54 | 0.655 |
| 55 | 55 | 0.0913 |
| 56 | 56 | 0.393 |
| 57 | 57 | 0.56 |
| 58 | 58 | 0.801 |
| 59 | 59 | 0.48 |
| 6 | 6 | 0.458 |
| 60 | 60 | 0.177 |
| 61 | 61 | 0.686 |
| 62 | 62 | 0.856 |
| 63 | 63 | 0.168 |
| 64 | 64 | 0.747 |
| 65 | 65 | 0.934 |
| 66 | 66 | 0.227 |
| 67 | 67 | 0.735 |
| 68 | 68 | 0.145 |
| 69 | 69 | 0.759 |
| 7 | 7 | 0.372 |
| 70 | 70 | 0.165 |
| 71 | 71 | 0.56 |
| 72 | 72 | 0.954 |
| 73 | 73 | 0.00228 |
| 74 | 74 | 0.077 |
| 75 | 75 | 0.323 |
| 76 | 76 | 0.998 |
| 77 | 77 | 0.0327 |
| 78 | 78 | 0.0149 |
| 79 | 79 | 0.365 |
| 8 | 8 | 0.804 |
| 80 | 80 | 0.515 |
| 81 | 81 | 0.196 |
| 82 | 82 | 0.571 |
| 83 | 83 | 0.608 |
| 84 | 84 | 0.974 |
| 85 | 85 | 0.557 |
| 86 | 86 | 0.77 |
| 87 | 87 | 7.29673e-4 |
| 88 | 88 | 0.816 |
| 89 | 89 | 0.154 |
| 9 | 9 | 0.832 |
| 90 | 90 | 0.43 |
| 91 | 91 | 0.764 |
| 92 | 92 | 0.715 |
| 93 | 93 | 0.52 |
| 94 | 94 | 0.46 |
| 95 | 95 | 0.27 |
| 96 | 96 | 0.86 |
| 97 | 97 | 0.31 |
| 98 | 98 | 0.718 |
| 99 | 99 | 0.0955 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11896
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
