FF:11392-118C6: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Astrocyte - cerebral cortex, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12005
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cerebral cortex
dev stage	fetus
sex	unknown
age	fetal
cell type	astrocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3641
catalog number	SC1805
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005736

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12005		CAGE		DRX008117		DRR008989

Accession ID Hg19

Library id		BAM		CTSS
CNhs12005		DRZ000414		DRZ001799

Accession ID Hg38

Library id		BAM		CTSS
CNhs12005		DRZ011764		DRZ013149

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005736

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10007.GTGAAA		sRNA-Seq		DRX037104		DRR041470

Accession ID Hg19

Library id		BAM		CTSS
SRhi10007.GTGAAA		DRZ007112

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.015
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.63
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.121
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0326
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0514
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.045
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0973
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0835
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.696
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0453
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0514
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0514
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.607
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.441
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0514
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.212
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0514
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.18
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.353
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.177
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.252
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12005

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.55744e-4
MA0003.1	MA0003.1	0.0869
MA0004.1	MA0004.1	0.145
MA0006.1	MA0006.1	0.696
MA0007.1	MA0007.1	0.392
MA0009.1	MA0009.1	0.177
MA0014.1	MA0014.1	0.584
MA0017.1	MA0017.1	0.00221
MA0018.2	MA0018.2	0.441
MA0019.1	MA0019.1	0.919
MA0024.1	MA0024.1	2.85241e-6
MA0025.1	MA0025.1	0.485
MA0027.1	MA0027.1	0.428
MA0028.1	MA0028.1	0.674
MA0029.1	MA0029.1	0.714
MA0030.1	MA0030.1	0.081
MA0031.1	MA0031.1	0.0133
MA0035.2	MA0035.2	0.0644
MA0038.1	MA0038.1	2.43518e-6
MA0039.2	MA0039.2	0.922
MA0040.1	MA0040.1	0.0438
MA0041.1	MA0041.1	0.281
MA0042.1	MA0042.1	0.127
MA0043.1	MA0043.1	0.842
MA0046.1	MA0046.1	0.996
MA0047.2	MA0047.2	8.17095e-4
MA0048.1	MA0048.1	0.255
MA0050.1	MA0050.1	0.00715
MA0051.1	MA0051.1	0.0264
MA0052.1	MA0052.1	0.517
MA0055.1	MA0055.1	0.303
MA0057.1	MA0057.1	0.482
MA0058.1	MA0058.1	0.0771
MA0059.1	MA0059.1	0.0642
MA0060.1	MA0060.1	1.36246e-14
MA0061.1	MA0061.1	0.0182
MA0062.2	MA0062.2	0.384
MA0065.2	MA0065.2	0.00231
MA0066.1	MA0066.1	0.0691
MA0067.1	MA0067.1	0.287
MA0068.1	MA0068.1	0.00102
MA0069.1	MA0069.1	0.973
MA0070.1	MA0070.1	0.0184
MA0071.1	MA0071.1	0.25
MA0072.1	MA0072.1	0.366
MA0073.1	MA0073.1	0.846
MA0074.1	MA0074.1	0.486
MA0076.1	MA0076.1	0.569
MA0077.1	MA0077.1	0.0377
MA0078.1	MA0078.1	0.709
MA0079.2	MA0079.2	0.701
MA0080.2	MA0080.2	2.39032e-14
MA0081.1	MA0081.1	0.0344
MA0083.1	MA0083.1	0.18
MA0084.1	MA0084.1	0.438
MA0087.1	MA0087.1	0.625
MA0088.1	MA0088.1	0.452
MA0090.1	MA0090.1	0.133
MA0091.1	MA0091.1	0.0235
MA0092.1	MA0092.1	0.485
MA0093.1	MA0093.1	0.16
MA0099.2	MA0099.2	1.90627e-7
MA0100.1	MA0100.1	0.275
MA0101.1	MA0101.1	0.196
MA0102.2	MA0102.2	0.00572
MA0103.1	MA0103.1	0.0428
MA0104.2	MA0104.2	0.187
MA0105.1	MA0105.1	2.72059e-5
MA0106.1	MA0106.1	0.148
MA0107.1	MA0107.1	0.0851
MA0108.2	MA0108.2	0.0104
MA0111.1	MA0111.1	0.465
MA0112.2	MA0112.2	1.06548e-4
MA0113.1	MA0113.1	0.21
MA0114.1	MA0114.1	0.0259
MA0115.1	MA0115.1	0.373
MA0116.1	MA0116.1	3.41034e-4
MA0117.1	MA0117.1	0.784
MA0119.1	MA0119.1	0.311
MA0122.1	MA0122.1	0.84
MA0124.1	MA0124.1	0.546
MA0125.1	MA0125.1	0.0137
MA0131.1	MA0131.1	0.508
MA0135.1	MA0135.1	0.483
MA0136.1	MA0136.1	1.63296e-15
MA0137.2	MA0137.2	0.372
MA0138.2	MA0138.2	0.187
MA0139.1	MA0139.1	0.0656
MA0140.1	MA0140.1	0.0565
MA0141.1	MA0141.1	0.0429
MA0142.1	MA0142.1	0.0302
MA0143.1	MA0143.1	0.0894
MA0144.1	MA0144.1	0.0739
MA0145.1	MA0145.1	0.244
MA0146.1	MA0146.1	0.0847
MA0147.1	MA0147.1	0.192
MA0148.1	MA0148.1	0.00666
MA0149.1	MA0149.1	0.0359
MA0150.1	MA0150.1	9.02708e-4
MA0152.1	MA0152.1	0.2
MA0153.1	MA0153.1	0.781
MA0154.1	MA0154.1	0.00295
MA0155.1	MA0155.1	0.669
MA0156.1	MA0156.1	1.21391e-5
MA0157.1	MA0157.1	0.0168
MA0159.1	MA0159.1	0.00894
MA0160.1	MA0160.1	0.029
MA0162.1	MA0162.1	0.507
MA0163.1	MA0163.1	4.33028e-8
MA0164.1	MA0164.1	0.604
MA0258.1	MA0258.1	0.00621
MA0259.1	MA0259.1	0.475

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12005

Novel motif	Logo	P-value
1	1	0.0608
10	10	0.0898
100	100	0.899
101	101	0.525
102	102	0.64
103	103	0.0985
104	104	0.871
105	105	0.256
106	106	0.0478
107	107	0.592
108	108	0.5
109	109	0.0278
11	11	0.0613
110	110	0.162
111	111	0.0405
112	112	0.022
113	113	0.439
114	114	0.00213
115	115	0.34
116	116	0.893
117	117	0.102
118	118	0.375
119	119	0.179
12	12	0.518
120	120	0.977
121	121	0.775
122	122	0.325
123	123	0.213
124	124	0.345
125	125	0.913
126	126	0.179
127	127	0.0804
128	128	0.263
129	129	0.246
13	13	0.277
130	130	0.281
131	131	0.449
132	132	0.957
133	133	0.981
134	134	0.861
135	135	0.242
136	136	0.854
137	137	0.158
138	138	0.0612
139	139	0.0019
14	14	0.765
140	140	0.101
141	141	0.249
142	142	0.693
143	143	0.00338
144	144	0.807
145	145	0.818
146	146	0.9
147	147	0.907
148	148	0.0144
149	149	0.12
15	15	0.0794
150	150	0.569
151	151	0.325
152	152	0.172
153	153	0.279
154	154	0.95
155	155	0.295
156	156	0.519
157	157	0.358
158	158	0.109
159	159	0.743
16	16	0.233
160	160	0.214
161	161	0.601
162	162	0.936
163	163	0.785
164	164	0.0596
165	165	0.142
166	166	0.287
167	167	0.623
168	168	0.503
169	169	0.00924
17	17	0.129
18	18	0.113
19	19	0.412
2	2	0.528
20	20	0.844
21	21	0.619
22	22	0.244
23	23	0.0714
24	24	0.352
25	25	0.463
26	26	0.369
27	27	0.188
28	28	0.761
29	29	0.133
3	3	0.0542
30	30	0.89
31	31	0.726
32	32	0.263
33	33	0.52
34	34	0.671
35	35	0.159
36	36	0.0401
37	37	0.0506
38	38	0.188
39	39	0.993
4	4	0.648
40	40	0.193
41	41	0.159
42	42	0.186
43	43	0.0858
44	44	0.343
45	45	0.538
46	46	0.0472
47	47	0.124
48	48	0.197
49	49	0.0966
5	5	0.122
50	50	0.781
51	51	0.312
52	52	0.524
53	53	0.6
54	54	0.338
55	55	0.215
56	56	0.458
57	57	0.474
58	58	0.0621
59	59	0.133
6	6	0.845
60	60	0.0629
61	61	0.333
62	62	0.0422
63	63	0.187
64	64	0.291
65	65	0.106
66	66	0.549
67	67	0.774
68	68	0.653
69	69	0.795
7	7	0.282
70	70	0.00651
71	71	0.0521
72	72	0.145
73	73	0.116
74	74	0.218
75	75	0.0463
76	76	0.344
77	77	0.149
78	78	0.211
79	79	0.546
8	8	0.273
80	80	0.24
81	81	0.44
82	82	0.0169
83	83	0.673
84	84	0.537
85	85	0.0289
86	86	0.181
87	87	0.94
88	88	0.711
89	89	0.152
9	9	0.285
90	90	0.338
91	91	0.714
92	92	0.0371
93	93	0.0769
94	94	0.0235
95	95	0.125
96	96	0.206
97	97	0.633
98	98	0.206
99	99	0.668

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12005

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000194 human astrocyte of the cerebral cortex sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002605 (astrocyte of the cerebral cortex)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000194 (human astrocyte of the cerebral cortex sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008010
+|DRA_sample_Accession=CAGE@SAMD00005736
-|accession_numbers=CAGE;DRX008117;DRR008989;DRZ000414;DRZ001799
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005736
+|accession_numbers=CAGE;DRX008117;DRR008989;DRZ000414;DRZ001799;DRZ011764;DRZ013149
+|accession_numbers_RNASeq=sRNA-Seq;DRX037104;DRR041470;DRZ007112
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002605
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002605;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebral%2520cortex%252c%2520donor3.CNhs12005.11392-118C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11392-118C6
 |is_a=EFO:0002091;;FF:0000194
 |is_obsolete=
 |library_id=CNhs12005
-|library_id_phase_based=1:CNhs12005
+|library_id_phase_based=2:CNhs12005
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11392
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTGAAA.11392
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11392
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTGAAA.11392
 |name=Astrocyte - cerebral cortex, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12005,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10007,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=118C6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10007.GTGAAA
 |sample_age=fetal
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
 |top_motifs=TFDP1:2.42117043707;GFI1:2.41633997969;OCT4_SOX2{dimer}:2.17714134858;NFY{A,B,C}:1.81518293591;E2F1..5:1.60906684864;XCPE1{core}:1.57435924212;ZIC1..3:1.56953695364;RBPJ:1.5053410036;SOX2:1.49417885796;SOX17:1.47345835292;SOX{8,9,10}:1.40608217929;POU1F1:1.31712864832;ZNF384:1.29549730554;NKX2-3_NKX2-5:1.29398603839;GTF2A1,2:1.28849779428;NKX2-1,4:1.25659737485;PBX1:1.11777427611;MTE{core}:1.09847243876;POU5F1:1.09217525413;MZF1:1.08774246255;PAX6:1.08768414195;LEF1_TCF7_TCF7L1,2:1.08681508918;TFAP2B:1.0796190597;LHX3,4:1.06856362418;GCM1,2:1.06522230956;NKX6-1,2:1.06100077082;BREu{core}:1.00029651818;TOPORS:0.966044642325;SP1:0.949289055438;HIC1:0.949077346554;CDC5L:0.941995436627;EGR1..3:0.923000698265;NR6A1:0.913381925603;ZFP161:0.860868733549;NANOG:0.85206592588;MYB:0.830383271693;NR3C1:0.821325762063;POU3F1..4:0.812814592717;MAZ:0.802444413856;PITX1..3:0.798801578398;ZNF143:0.787569051229;TFAP2{A,C}:0.771443984514;CDX1,2,4:0.769714373061;FOXP1:0.762225874232;NRF1:0.719153186753;ONECUT1,2:0.686635316807;UFEwm:0.669942076315;GFI1B:0.66575009203;TEAD1:0.661584969063;PAX5:0.651029506659;SRF:0.629692993847;POU2F1..3:0.602343862963;EVI1:0.586579194281;GATA4:0.57470011932;HMGA1,2:0.558899873957;GTF2I:0.548786224055;JUN:0.539017314309;RFX1:0.525622230665;TLX1..3_NFIC{dimer}:0.523815823442;ELK1,4_GABP{A,B1}:0.521341205981;MYBL2:0.488682934403;STAT1,3:0.487487099206;ALX1:0.452354573541;PATZ1:0.449889817807;KLF4:0.437778805306;HOX{A4,D4}:0.421472667301;TFAP4:0.383808091427;PAX1,9:0.3835340031;NKX2-2,8:0.344491467084;PRRX1,2:0.34013167103;PAX4:0.306472956005;IKZF2:0.297406531101;STAT5{A,B}:0.274878988707;LMO2:0.273010310086;HSF1,2:0.261537029359;VSX1,2:0.230967328384;IKZF1:0.201028039323;EBF1:0.196160920346;GZF1:0.193546123058;PRDM1:0.188269558223;NKX3-2:0.186326463965;CUX2:0.163090390621;ZBTB6:0.152090803113;RREB1:0.137674194485;AIRE:0.105635555054;EN1,2:0.0940311903161;PAX8:0.0935904438976;MED-1{core}:0.0649669895459;HOXA9_MEIS1:0.0594818189785;FOXP3:0.0501293500414;HMX1:0.0431850287674;NFIX:0.0307902410676;SOX5:0.0086614957741;NHLH1,2:0.00709764822797;T:0.00181452319722;TFCP2:0.00180137793481;AR:-0.0199348366403;TP53:-0.0225527862549;YY1:-0.0446741413003;MEF2{A,B,C,D}:-0.0498122251346;RXR{A,B,G}:-0.0507779931418;MYOD1:-0.0518041445698;ATF4:-0.0654523959585;HOX{A5,B5}:-0.0765871077521;CRX:-0.0785283572098;ALX4:-0.0816222377736;HNF4A_NR2F1,2:-0.102441081285;ESRRA:-0.103855680156;TBP:-0.10809980417;CREB1:-0.109125158262;FOXN1:-0.11112174778;FOXM1:-0.112436533723;FOXD3:-0.120612458615;NR1H4:-0.128793001316;TEF:-0.132217877431;ZBTB16:-0.140942264555;HNF1A:-0.143843151846;STAT2,4,6:-0.15764318022;NFATC1..3:-0.164877766267;ZNF148:-0.1649357868;PAX3,7:-0.173142069006;NANOG{mouse}:-0.175158772416;FOS_FOS{B,L1}_JUN{B,D}:-0.181013617328;NFE2L2:-0.181774509046;MYFfamily:-0.219247318455;BACH2:-0.223015051281;ARID5B:-0.252654724197;ZNF423:-0.282338126665;REST:-0.282932579154;TGIF1:-0.290335088041;NKX3-1:-0.292990989427;MTF1:-0.294487201595;XBP1:-0.303401265015;FOXL1:-0.317628690823;DBP:-0.323076842767;HOX{A6,A7,B6,B7}:-0.326310675965;NFKB1_REL_RELA:-0.332550553736;TBX4,5:-0.364708039219;RUNX1..3:-0.379146231221;FOSL2:-0.379531823513;FOXA2:-0.391856546629;AHR_ARNT_ARNT2:-0.392283238311;EP300:-0.393349189808;RFX2..5_RFXANK_RFXAP:-0.404363021492;NFE2L1:-0.425637679609;SMAD1..7,9:-0.460052269328;NFE2:-0.469067529099;ATF2:-0.471599229955;ADNP_IRX_SIX_ZHX:-0.481326529678;POU6F1:-0.543225652401;BPTF:-0.550871673695;SNAI1..3:-0.555776843621;SPIB:-0.585927293202;MAFB:-0.588665439247;IRF7:-0.593894455575;IRF1,2:-0.628389881532;DMAP1_NCOR{1,2}_SMARC:-0.641822501892;NFIL3:-0.65112311264;SPI1:-0.651718441316;GATA6:-0.666858837415;HBP1_HMGB_SSRP1_UBTF:-0.6705653479;RXRA_VDR{dimer}:-0.703338881927;ELF1,2,4:-0.722076462141;HAND1,2:-0.725935124365;HES1:-0.745086168057;NR5A1,2:-0.747475175543;HLF:-0.747896832386;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.752159449709;SPZ1:-0.769058055706;ESR1:-0.800049370076;ZEB1:-0.813434014151;CEBPA,B_DDIT3:-0.817749076063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878466975264;ATF5_CREB3:-0.882855142312;GLI1..3:-0.88598908223;PDX1:-0.921570039909;FOXO1,3,4:-0.922798090032;FOX{D1,D2}:-0.935454872596;ETS1,2:-0.93855449384;TAL1_TCF{3,4,12}:-0.938812733952;PPARG:-1.01115875523;SREBF1,2:-1.04612825745;FOX{F1,F2,J1}:-1.06781316629;RORA:-1.06820066626;PAX2:-1.07171298273;bHLH_family:-1.20830329134;ATF6:-1.22611744819;FOXQ1:-1.24041141445;HIF1A:-1.25011310166;ZNF238:-1.36329755358;FOX{I1,J2}:-1.50534604962;TLX2:-1.58850134722
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11392-118C6;search_select_hide=table117:FF:11392-118C6
 }}

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FF:11392-118C6: Difference between revisions

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Latest revision as of 17:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0