FF:11500-119F6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005763 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005763 | ||
|accession_numbers=CAGE;DRX008112;DRR008984;DRZ000409;DRZ001794;DRZ011759;DRZ013144 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037056;DRR041422;DRZ007064 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002037,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002603 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000195 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
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| 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8.25!IRX3;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.79!NR2F1;;chr2:25475120..25475176,-!p2@DNMT3A!0.78!6.89!DNMT3A;;chr19:38720294..38720348,-!p1@DPF1!0.78!6.40!DPF1;;chr6:31126291..31126399,+!p1@TCF19!0.77!51.46!TCF19;;chr11:46299199..46299233,+!p1@CREB3L1!0.77!27.58!CREB3L1;;chr14:21994449..21994524,-!p2@SALL2!0.77!15.88!SALL2;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.17!TWIST1;;chr6:137815524..137815537,-!p1@OLIG3!0.77!4.92!OLIG3;;chr3:147111198..147111225,+!p4@ZIC1!0.77!4.92!ZIC1;;chr6:45390077..45390105,+!p9@RUNX2!0.76!6.28!RUNX2;;chr14:57277178..57277203,-!p1@OTX2!0.76!4.80!OTX2;;chr2:85980768..85980783,+!p10@ATOH8!0.76!4.80!ATOH8;;chr3:147114260..147114290,-!p3@ZIC4!0.76!4.80!ZIC4;;chr5:72744594..72744609,-!p1@FOXD1!0.75!23.15!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.08!HOXB2;;chr16:54320617..54320643,-!p3@IRX3!0.75!6.03!IRX3;;chr11:31832610..31832639,-!p5@PAX6!0.75!4.68!PAX6;;chr17:46622440..46622477,-!p5@HOXB2!0.74!5.05!HOXB2;;chr19:13135731..13135787,+!p10@NFIX!0.74!4.56!NFIX;;chr12:124873852..124873881,-!p3@NCOR2!0.73!29.18!NCOR2;;chr16:29818199..29818216,+!p11@MAZ!0.73!7.51!MAZ;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.88!MLLT11;;chr21:36260773..36260804,-!p7@RUNX1!0.72!5.91!RUNX1;;chr5:92919375..92919438,+!p6@NR2F1!0.72!4.68!NR2F1;;chr19:49865646..49865718,-!p1@TEAD2!0.71!40.14!TEAD2;;chr11:31832862..31832884,-!p2@PAX6!0.71!4.19!PAX6;;chr14:29236269..29236285,+!p3@FOXG1!0.71!4.19!FOXG1;;chr1:59249732..59249749,-!p2@JUN!0.70!55.77!JUN;;chr7:42276787..42276815,-!p1@GLI3!0.70!11.82!GLI3;;chr20:31350184..31350200,+!p1@DNMT3B!0.70!9.11!DNMT3B;;chr2:85980951..85981004,+!p1@ATOH8!0.70!7.02!ATOH8;;chr17:46655704..46655718,-!p2@HOXB4!0.70!6.28!HOXB4;;chr8:80679993..80680011,-!p1@HEY1!0.70!6.16!HEY1;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.06!BNC2;;chr2:85981073..85981091,+!p5@ATOH8!0.70!4.06!ATOH8;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!4.06!PKNOX2;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.44!MAZ;;chr3:150126759..150126784,+!p2@TSC22D2!0.69!20.31!TSC22D2;;chr7:150946015..150946070,-!p3@SMARCD3!0.69!9.23!SMARCD3;;chr5:178368186..178368238,+!p1@ZNF454!0.69!7.51!ZNF454;;chr19:49864746..49864780,-!p2@TEAD2!0.69!5.66!TEAD2;;chr2:5832493..5832507,+!p2@SOX11!0.69!3.94!SOX11;;chr20:30193083..30193098,+!p1@ID1!0.68!354.34!ID1;;chr6:34204973..34204990,+!p4@HMGA1!0.68!58.24!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.68!36.20!TBX3;;chr9:14314131..14314147,-!p2@NFIB!0.68!24.01!NFIB;;chr5:133450365..133450444,+!p1@TCF7!0.68!19.45!TCF7;;chr7:27153454..27153469,-!p2@HOXA3!0.68!3.82!HOXA3;;chr2:237076971..237076978,-!p3@GBX2!0.68!3.82!GBX2;;chr14:29235961..29236008,+!p1@FOXG1!0.68!3.82!FOXG1;;chr15:67458491..67458505,+!p18@SMAD3!0.68!3.82!SMAD3;;chr9:130954041..130954121,-!p2@CIZ1!0.67!18.10!CIZ1;;chr4:4861385..4861398,+!p1@MSX1!0.67!12.19!MSX1;;chr20:42543506..42543549,+!p2@TOX2!0.67!9.85!TOX2;;chr19:13134457..13134462,+!p5@NFIX!0.67!7.14!NFIX;;chr1:214161272..214161322,+!p1@PROX1!0.67!5.42!PROX1;;chr3:147138953..147138965,+!p19@ZIC1!0.67!3.69!ZIC1;;chr7:150945663..150945692,-!p5@SMARCD3!0.67!3.69!SMARCD3;;chr7:27142290..27142310,-!p1@HOXA2!0.66!3.57!HOXA2;;chr16:54964899..54964914,+!p2@IRX5!0.66!3.57!IRX5;;chr16:8962853..8962878,-!p1@CARHSP1!0.65!236.88!CARHSP1;;chr12:124873357..124873401,-!p1@NCOR2!0.65!46.66!NCOR2;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.39!HMGA2;;chr9:4300050..4300118,-!p1@GLIS3!0.64!25.36!GLIS3;;chr20:42295713..42295738,+!p2@MYBL2!0.64!22.90!MYBL2;;chr21:47063625..47063658,+!p1@PCBP3!0.64!17.11!PCBP3;;chr16:54320158..54320200,-!p5@IRX3!0.64!5.17!IRX3;;chr12:66218598..66218645,+!p2@HMGA2!0.63!17.61!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.63!13.05!MEIS1;;chr6:35310395..35310410,+!p2@PPARD!0.62!14.41!PPARD;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.06!FOXD1;;chr5:92918789..92918800,+!p12@NR2F1!0.62!3.20!NR2F1;;chr6:45390399..45390418,+!p15@RUNX2!0.62!3.20!RUNX2;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.62!3.20!POU3F3;;chr19:50542543..50542548,+!p2@ZNF473!0.62!3.20!ZNF473;;chr12:106976774..106976788,+!p1@RFX4!0.62!3.20!RFX4;;chr1:23885981..23886002,-!p1@ID3!0.61!655.37!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.61!82.24!AEBP1;;chr16:86600426..86600441,+!p1@FOXC2!0.61!8.62!FOXC2;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.05!HOXB2;;chr2:119605056..119605071,-!p10@EN1!0.61!3.08!EN1;;chr3:147123837..147123848,-!p7@ZIC4!0.61!3.08!ZIC4;;chr8:49833978..49833996,-!p1@SNAI2!0.60!74.86!SNAI2;;chr19:1592714..1592762,-!p1@MBD3!0.60!26.84!MBD3;;chr20:48599506..48599526,+!p1@SNAI1!0.60!22.90!SNAI1;;chr1:164528616..164528660,+!p5@PBX1!0.60!6.89!PBX1;;chr20:55205791..55205817,+!p3@TFAP2C!0.60!2.95!TFAP2C;;chr13:100623360..100623373,-!p2@ZIC5!0.60!2.95!ZIC5;;chr6:34204672..34204692,+!p1@HMGA1!0.59!399.77!HMGA1;;chr3:150126101..150126118,+!p6@TSC22D2!0.59!5.17!TSC22D2;;chr12:50479109..50479146,+!p2@SMARCD1!0.58!58.24!SMARCD1;;chr17:42296855..42296894,-!p4@UBTF!0.58!12.56!UBTF;;chr2:200322654..200322707,-!p2@SATB2!0.58!4.43!SATB2;;chr3:21792682..21792720,-!p1@ZNF385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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002603;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11500-119F6 | |id=FF:11500-119F6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000195 | ||
|is_obsolete= | |||
|library_id=CNhs11321 | |||
|library_id_phase_based=2:CNhs11321 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11500 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.TTAGGC.11500 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11500 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.TTAGGC.11500 | |||
|name=Astrocyte - cerebellum, donor1 | |name=Astrocyte - cerebellum, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11321,LSID767,release009,COMPLETED | |profile_hcage=CNhs11321,LSID767,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.013591721535343,0,-0.0690268655732618,-0.234602348606887,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.0252132850858441,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.12344314219799,0,0,0,0,0,0,0,0,0.0487994759430652,0,0,0,0.490388062043491,0,0.0912849553747934,0,-0.0969923612426051,0,0,-0.0469170570414087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0177767525327245,0.0956024239401108,0,0,0,0.0455469777901889,0.156296792347311,0,0.0504265701716883,0.0252132850858441,0,-0.00243292729759559,-0.0428747768607846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00941871811159645,0.0504265701716883,0,0,-0.0854966689953482,-0.165137754743871,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC1815 | |rna_catalog_number=SC1815 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119F6 | |rna_tube_id=119F6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.4074447075257e-242!GO:0043231;intracellular membrane-bound organelle;2.9884085731246e-198!GO:0043227;membrane-bound organelle;5.35126376373467e-198!GO:0043226;organelle;7.40970834524017e-198!GO:0043229;intracellular organelle;1.13495102818307e-197!GO:0005737;cytoplasm;9.66456501983381e-181!GO:0044422;organelle part;1.44586850425743e-139!GO:0044446;intracellular organelle part;3.11055199455716e-138!GO:0044444;cytoplasmic part;2.57027657663048e-122!GO:0032991;macromolecular complex;9.74811077047669e-95!GO:0005634;nucleus;1.21665015847095e-83!GO:0030529;ribonucleoprotein complex;1.50351177757526e-83!GO:0044237;cellular metabolic process;3.38806534666519e-78!GO:0044238;primary metabolic process;1.43667062705154e-77!GO:0005515;protein binding;4.99048173718283e-76!GO:0043170;macromolecule metabolic process;3.38891627135627e-72!GO:0043233;organelle lumen;8.85471087985252e-69!GO:0031974;membrane-enclosed lumen;8.85471087985252e-69!GO:0044428;nuclear part;5.87297104971912e-67!GO:0005739;mitochondrion;5.91534985055454e-65!GO:0003723;RNA binding;6.68951057976105e-62!GO:0016043;cellular component organization and biogenesis;1.38414157872918e-54!GO:0005840;ribosome;2.0402102194551e-51!GO:0031090;organelle membrane;1.85564016528163e-47!GO:0043234;protein complex;4.51221123798771e-47!GO:0003735;structural constituent of ribosome;2.92927523901947e-46!GO:0044429;mitochondrial part;6.19294868888767e-45!GO:0043283;biopolymer metabolic process;1.40092646547079e-44!GO:0006412;translation;7.56145050298562e-42!GO:0006396;RNA processing;1.88717646390384e-41!GO:0031981;nuclear lumen;2.12833308333387e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.65912151714549e-41!GO:0010467;gene expression;6.30853670050566e-40!GO:0033279;ribosomal subunit;1.18855582280564e-39!GO:0031967;organelle envelope;2.84034687421391e-38!GO:0031975;envelope;5.07053362626374e-38!GO:0006996;organelle organization and biogenesis;7.03787348598081e-38!GO:0009058;biosynthetic process;3.38211456297476e-37!GO:0015031;protein transport;4.26416133166407e-36!GO:0019538;protein metabolic process;5.03366831184929e-36!GO:0033036;macromolecule localization;1.09688963934399e-35!GO:0044249;cellular biosynthetic process;5.72628875818073e-35!GO:0043228;non-membrane-bound organelle;2.12875666576614e-34!GO:0043232;intracellular non-membrane-bound organelle;2.12875666576614e-34!GO:0009059;macromolecule biosynthetic process;5.40778013858423e-34!GO:0016071;mRNA metabolic process;5.88059278110079e-34!GO:0006259;DNA metabolic process;3.52005303474988e-33!GO:0008104;protein localization;6.06241362381328e-33!GO:0045184;establishment of protein localization;1.34708089755212e-32!GO:0046907;intracellular transport;1.52492546943437e-32!GO:0005829;cytosol;1.87207291488241e-32!GO:0008380;RNA splicing;3.55621876619009e-32!GO:0044260;cellular macromolecule metabolic process;8.96669867049198e-32!GO:0044267;cellular protein metabolic process;2.4519029745122e-31!GO:0005740;mitochondrial envelope;9.88697602413973e-30!GO:0065003;macromolecular complex assembly;1.6443797223125e-29!GO:0006397;mRNA processing;2.95720853003916e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.47469676512398e-28!GO:0031966;mitochondrial membrane;5.84357160355261e-28!GO:0019866;organelle inner membrane;1.10077345112702e-27!GO:0022607;cellular component assembly;4.4639460932738e-27!GO:0007049;cell cycle;1.04960830248232e-26!GO:0005743;mitochondrial inner membrane;1.3368186405873e-26!GO:0006886;intracellular protein transport;5.45625084758506e-26!GO:0005654;nucleoplasm;1.89589450370946e-25!GO:0003676;nucleic acid binding;6.33043114250774e-24!GO:0005681;spliceosome;4.34106810348549e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.42064409592235e-22!GO:0044445;cytosolic part;5.09045294626011e-22!GO:0015934;large ribosomal subunit;1.72732424633222e-21!GO:0044451;nucleoplasm part;2.38307130237888e-21!GO:0022402;cell cycle process;4.1799191131304e-21!GO:0006119;oxidative phosphorylation;8.42286420638448e-21!GO:0051649;establishment of cellular localization;4.65062817868788e-20!GO:0000278;mitotic cell cycle;5.17682485963199e-20!GO:0051641;cellular localization;9.91014233261045e-20!GO:0015935;small ribosomal subunit;3.46588088596e-19!GO:0044455;mitochondrial membrane part;6.0557144752415e-19!GO:0031980;mitochondrial lumen;1.01939048226848e-18!GO:0005759;mitochondrial matrix;1.01939048226848e-18!GO:0016070;RNA metabolic process;3.16436195464753e-18!GO:0012505;endomembrane system;8.88590952918312e-18!GO:0000166;nucleotide binding;9.44640569982578e-18!GO:0051276;chromosome organization and biogenesis;1.09004600805109e-17!GO:0048770;pigment granule;4.57759993977854e-17!GO:0042470;melanosome;4.57759993977854e-17!GO:0005694;chromosome;6.22539064106701e-17!GO:0006457;protein folding;8.9366079732253e-17!GO:0016462;pyrophosphatase activity;1.52194270049935e-16!GO:0044427;chromosomal part;1.73883577033925e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.94996742363224e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.21270806583612e-16!GO:0005783;endoplasmic reticulum;2.45045855550969e-16!GO:0008134;transcription factor binding;2.58349876252246e-16!GO:0005746;mitochondrial respiratory chain;5.92003395414509e-16!GO:0017111;nucleoside-triphosphatase activity;8.99107842442792e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.3328371776186e-15!GO:0005730;nucleolus;1.5170561261958e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.57662756096123e-15!GO:0022403;cell cycle phase;2.18368177942406e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.99801135897776e-15!GO:0003954;NADH dehydrogenase activity;3.99801135897776e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.99801135897776e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.75177486799674e-15!GO:0006974;response to DNA damage stimulus;5.75139825955244e-15!GO:0006323;DNA packaging;7.46654031051628e-15!GO:0005761;mitochondrial ribosome;8.21603341177292e-15!GO:0000313;organellar ribosome;8.21603341177292e-15!GO:0000087;M phase of mitotic cell cycle;2.13660852000713e-14!GO:0016874;ligase activity;2.25344708456718e-14!GO:0007067;mitosis;2.46902133951046e-14!GO:0005794;Golgi apparatus;2.49970170551416e-14!GO:0051186;cofactor metabolic process;2.83700234554762e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.41742861063589e-14!GO:0044432;endoplasmic reticulum part;5.78690165251065e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.7009484556764e-13!GO:0042773;ATP synthesis coupled electron transport;1.7009484556764e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.82341069120527e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.79518509526309e-13!GO:0045271;respiratory chain complex I;2.79518509526309e-13!GO:0005747;mitochondrial respiratory chain complex I;2.79518509526309e-13!GO:0006605;protein targeting;3.59145767395336e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.92007939125638e-13!GO:0000375;RNA splicing, via transesterification reactions;4.92007939125638e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.92007939125638e-13!GO:0044265;cellular macromolecule catabolic process;5.93060591311774e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.00951258300465e-13!GO:0006281;DNA repair;8.11250089163676e-13!GO:0006260;DNA replication;8.23318173068769e-13!GO:0051301;cell division;1.10407845876993e-12!GO:0022618;protein-RNA complex assembly;1.27155569148188e-12!GO:0006512;ubiquitin cycle;1.31897785739918e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.31897785739918e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.23150897720445e-12!GO:0019941;modification-dependent protein catabolic process;4.50624042184735e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.50624042184735e-12!GO:0051082;unfolded protein binding;4.74726947957406e-12!GO:0006511;ubiquitin-dependent protein catabolic process;6.50849473149308e-12!GO:0044257;cellular protein catabolic process;7.66114213814268e-12!GO:0048193;Golgi vesicle transport;9.35810922464692e-12!GO:0000279;M phase;9.35810922464692e-12!GO:0000074;regulation of progression through cell cycle;1.23298966831676e-11!GO:0051726;regulation of cell cycle;1.29206468485002e-11!GO:0032553;ribonucleotide binding;1.50035464076565e-11!GO:0032555;purine ribonucleotide binding;1.50035464076565e-11!GO:0006333;chromatin assembly or disassembly;1.50035464076565e-11!GO:0065004;protein-DNA complex assembly;1.51112699684568e-11!GO:0043285;biopolymer catabolic process;1.60893615023736e-11!GO:0006732;coenzyme metabolic process;4.06262849606934e-11!GO:0017076;purine nucleotide binding;4.83514374876911e-11!GO:0009057;macromolecule catabolic process;5.75161727040666e-11!GO:0000785;chromatin;6.75748184804453e-11!GO:0044248;cellular catabolic process;7.07965583628869e-11!GO:0003712;transcription cofactor activity;1.0382064828983e-10!GO:0008135;translation factor activity, nucleic acid binding;1.92114430739549e-10!GO:0009719;response to endogenous stimulus;2.40111964788984e-10!GO:0016192;vesicle-mediated transport;2.70543783670204e-10!GO:0030163;protein catabolic process;2.88495935246703e-10!GO:0043412;biopolymer modification;3.046692056363e-10!GO:0006334;nucleosome assembly;3.47467532794599e-10!GO:0042254;ribosome biogenesis and assembly;4.68566922704734e-10!GO:0006366;transcription from RNA polymerase II promoter;5.15511928999012e-10!GO:0031497;chromatin assembly;5.67499271658441e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.73116386870572e-10!GO:0005789;endoplasmic reticulum membrane;5.95643805182357e-10!GO:0009055;electron carrier activity;6.63883378042674e-10!GO:0016604;nuclear body;6.84133171408842e-10!GO:0005793;ER-Golgi intermediate compartment;1.01458293504645e-09!GO:0005524;ATP binding;1.17518810393628e-09!GO:0005635;nuclear envelope;1.2951639137227e-09!GO:0050794;regulation of cellular process;1.90873589371988e-09!GO:0032559;adenyl ribonucleotide binding;1.9678918891567e-09!GO:0031965;nuclear membrane;3.30884387904521e-09!GO:0006913;nucleocytoplasmic transport;3.43053167402517e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.3936665025217e-09!GO:0006464;protein modification process;4.64554619184382e-09!GO:0015630;microtubule cytoskeleton;6.57893013222054e-09!GO:0030554;adenyl nucleotide binding;7.91109547591979e-09!GO:0051169;nuclear transport;8.16349524359302e-09!GO:0048523;negative regulation of cellular process;1.19635302141671e-08!GO:0009259;ribonucleotide metabolic process;1.32004994685928e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.36278208324717e-08!GO:0006163;purine nucleotide metabolic process;1.5504455674063e-08!GO:0044453;nuclear membrane part;2.45015289955974e-08!GO:0006461;protein complex assembly;3.26059541648078e-08!GO:0009150;purine ribonucleotide metabolic process;3.56261487062098e-08!GO:0006399;tRNA metabolic process;3.68276006461559e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.44980310730938e-08!GO:0008565;protein transporter activity;4.8616076625817e-08!GO:0009060;aerobic respiration;5.11048303254475e-08!GO:0006164;purine nucleotide biosynthetic process;6.51266218966581e-08!GO:0016607;nuclear speck;8.76376038776372e-08!GO:0042623;ATPase activity, coupled;8.91659452021937e-08!GO:0045333;cellular respiration;1.12928112934041e-07!GO:0016568;chromatin modification;1.16697372309575e-07!GO:0003743;translation initiation factor activity;1.3037476868164e-07!GO:0009260;ribonucleotide biosynthetic process;1.32534120723945e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.46848670271188e-07!GO:0065002;intracellular protein transport across a membrane;1.60372402149355e-07!GO:0017038;protein import;1.7422219859414e-07!GO:0051329;interphase of mitotic cell cycle;1.7930012840055e-07!GO:0012501;programmed cell death;1.84464046315212e-07!GO:0016887;ATPase activity;2.0351601916944e-07!GO:0005643;nuclear pore;2.1296299207647e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.37046997246279e-07!GO:0006446;regulation of translational initiation;2.5000467716668e-07!GO:0009141;nucleoside triphosphate metabolic process;2.88519143661803e-07!GO:0048475;coated membrane;2.89458788995621e-07!GO:0030117;membrane coat;2.89458788995621e-07!GO:0005667;transcription factor complex;2.90491918875897e-07!GO:0006413;translational initiation;2.9272721413497e-07!GO:0006915;apoptosis;2.98974589478202e-07!GO:0043687;post-translational protein modification;3.01209439401706e-07!GO:0008639;small protein conjugating enzyme activity;3.20651247005299e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.68865326054165e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.68865326054165e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.68865326054165e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.19858900784066e-07!GO:0007005;mitochondrion organization and biogenesis;4.32103126579429e-07!GO:0050789;regulation of biological process;4.42142259622207e-07!GO:0051188;cofactor biosynthetic process;4.42777227785433e-07!GO:0004386;helicase activity;4.42777227785433e-07!GO:0051325;interphase;4.74120038530297e-07!GO:0006364;rRNA processing;4.77468247436916e-07!GO:0003697;single-stranded DNA binding;5.07007206499133e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.21223767337605e-07!GO:0004842;ubiquitin-protein ligase activity;5.50186975569274e-07!GO:0015986;ATP synthesis coupled proton transport;5.50454713293046e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.50454713293046e-07!GO:0003924;GTPase activity;6.0005816347817e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.02207998603734e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.02207998603734e-07!GO:0048519;negative regulation of biological process;7.39139581816928e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.08018302277851e-07!GO:0030120;vesicle coat;8.08018302277851e-07!GO:0030662;coated vesicle membrane;8.08018302277851e-07!GO:0031252;leading edge;8.9136531917935e-07!GO:0031324;negative regulation of cellular metabolic process;9.20063790104303e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.29285481594972e-07!GO:0006099;tricarboxylic acid cycle;9.3028540245294e-07!GO:0046356;acetyl-CoA catabolic process;9.3028540245294e-07!GO:0016740;transferase activity;1.03238850555664e-06!GO:0043038;amino acid activation;1.04802403250369e-06!GO:0006418;tRNA aminoacylation for protein translation;1.04802403250369e-06!GO:0043039;tRNA aminoacylation;1.04802403250369e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.0797100999543e-06!GO:0016072;rRNA metabolic process;1.26096670375622e-06!GO:0044431;Golgi apparatus part;1.26127574684218e-06!GO:0019787;small conjugating protein ligase activity;1.28352053430129e-06!GO:0008219;cell death;1.34130139394735e-06!GO:0016265;death;1.34130139394735e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.55362688577455e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.55362688577455e-06!GO:0008026;ATP-dependent helicase activity;1.66188832829715e-06!GO:0043566;structure-specific DNA binding;1.6812476865532e-06!GO:0045259;proton-transporting ATP synthase complex;2.06023266056075e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.67803384876286e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.67803384876286e-06!GO:0046034;ATP metabolic process;2.88559747071107e-06!GO:0009117;nucleotide metabolic process;3.04315217412643e-06!GO:0006084;acetyl-CoA metabolic process;3.39321475062123e-06!GO:0045786;negative regulation of progression through cell cycle;4.08748293100059e-06!GO:0016881;acid-amino acid ligase activity;4.32482286274788e-06!GO:0016853;isomerase activity;4.37389583488518e-06!GO:0005762;mitochondrial large ribosomal subunit;4.39232111970934e-06!GO:0000315;organellar large ribosomal subunit;4.39232111970934e-06!GO:0019829;cation-transporting ATPase activity;4.39232111970934e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.39232111970934e-06!GO:0016779;nucleotidyltransferase activity;4.39677619549925e-06!GO:0050657;nucleic acid transport;5.06075475492749e-06!GO:0051236;establishment of RNA localization;5.06075475492749e-06!GO:0050658;RNA transport;5.06075475492749e-06!GO:0005788;endoplasmic reticulum lumen;5.18263338771338e-06!GO:0031988;membrane-bound vesicle;5.19841175249948e-06!GO:0009109;coenzyme catabolic process;5.27769570536192e-06!GO:0005768;endosome;5.52202280737762e-06!GO:0006403;RNA localization;5.83833520813023e-06!GO:0046930;pore complex;6.80961104893298e-06!GO:0003713;transcription coactivator activity;6.93077761907681e-06!GO:0009892;negative regulation of metabolic process;7.01881419987341e-06!GO:0009056;catabolic process;7.09689871354235e-06!GO:0004298;threonine endopeptidase activity;7.57667687619297e-06!GO:0051187;cofactor catabolic process;7.85046721641287e-06!GO:0016049;cell growth;8.44163247216159e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.49587775562572e-06!GO:0006754;ATP biosynthetic process;9.91146806926598e-06!GO:0006753;nucleoside phosphate metabolic process;9.91146806926598e-06!GO:0008361;regulation of cell size;1.04465082206053e-05!GO:0000245;spliceosome assembly;1.21651683624395e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.26657565147238e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.5423187703077e-05!GO:0005819;spindle;1.56148203630605e-05!GO:0016563;transcription activator activity;1.63711630990811e-05!GO:0051427;hormone receptor binding;1.7586405593332e-05!GO:0016481;negative regulation of transcription;1.78583337776889e-05!GO:0007010;cytoskeleton organization and biogenesis;1.81532942296624e-05!GO:0003899;DNA-directed RNA polymerase activity;1.82738529633487e-05!GO:0005905;coated pit;1.89248975037168e-05!GO:0008654;phospholipid biosynthetic process;2.09540288842979e-05!GO:0016564;transcription repressor activity;2.09540288842979e-05!GO:0000786;nucleosome;2.36444138690564e-05!GO:0001558;regulation of cell growth;2.83874956798722e-05!GO:0003714;transcription corepressor activity;2.83964262953866e-05!GO:0009108;coenzyme biosynthetic process;3.11134314955228e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.27582307130884e-05!GO:0044440;endosomal part;3.49206507148829e-05!GO:0010008;endosome membrane;3.49206507148829e-05!GO:0006752;group transfer coenzyme metabolic process;3.54123988181851e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.60619053297022e-05!GO:0035257;nuclear hormone receptor binding;3.7236311372616e-05!GO:0043623;cellular protein complex assembly;4.06928461603046e-05!GO:0000139;Golgi membrane;5.24096591897334e-05!GO:0031982;vesicle;5.82942337168828e-05!GO:0031410;cytoplasmic vesicle;6.14157038622355e-05!GO:0006261;DNA-dependent DNA replication;6.82665700113518e-05!GO:0000775;chromosome, pericentric region;7.49365934353517e-05!GO:0051170;nuclear import;7.58734412593668e-05!GO:0042981;regulation of apoptosis;8.38199185565795e-05!GO:0006606;protein import into nucleus;8.54729504249051e-05!GO:0032446;protein modification by small protein conjugation;8.5993850392755e-05!GO:0043067;regulation of programmed cell death;8.62313363749792e-05!GO:0000314;organellar small ribosomal subunit;0.000102179924479427!GO:0005763;mitochondrial small ribosomal subunit;0.000102179924479427!GO:0051028;mRNA transport;0.000110924100239027!GO:0016859;cis-trans isomerase activity;0.000112806965215599!GO:0006613;cotranslational protein targeting to membrane;0.000115272376463037!GO:0005770;late endosome;0.00011698170188482!GO:0005813;centrosome;0.000117545739680512!GO:0005657;replication fork;0.000119875593370012!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000123086043410841!GO:0019222;regulation of metabolic process;0.00012589142106334!GO:0030867;rough endoplasmic reticulum membrane;0.000129565001511236!GO:0006916;anti-apoptosis;0.000131236593700136!GO:0016491;oxidoreductase activity;0.000134518285390763!GO:0043069;negative regulation of programmed cell death;0.000143062123605581!GO:0015980;energy derivation by oxidation of organic compounds;0.000145390906993115!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000148842011458849!GO:0016567;protein ubiquitination;0.000153443403002827!GO:0005874;microtubule;0.000159253694659527!GO:0007051;spindle organization and biogenesis;0.000165661301115329!GO:0051246;regulation of protein metabolic process;0.000180144398530277!GO:0045454;cell redox homeostasis;0.00018405261651407!GO:0005525;GTP binding;0.000200178141224285!GO:0043066;negative regulation of apoptosis;0.000211590463057799!GO:0008094;DNA-dependent ATPase activity;0.000221524473689242!GO:0006793;phosphorus metabolic process;0.000221524473689242!GO:0006796;phosphate metabolic process;0.000221524473689242!GO:0005798;Golgi-associated vesicle;0.000231083737804068!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000243076022796554!GO:0005773;vacuole;0.000247963659852412!GO:0046474;glycerophospholipid biosynthetic process;0.000291346021009779!GO:0019899;enzyme binding;0.000292842340080549!GO:0003724;RNA helicase activity;0.000295498873722148!GO:0000075;cell cycle checkpoint;0.000310793317815869!GO:0000151;ubiquitin ligase complex;0.000328025647951549!GO:0033116;ER-Golgi intermediate compartment membrane;0.000331211439122062!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000331211439122062!GO:0005815;microtubule organizing center;0.000333904178598202!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000338957053429309!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000339318661050036!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000347996349079598!GO:0016363;nuclear matrix;0.000363075945718238!GO:0030036;actin cytoskeleton organization and biogenesis;0.000370050653763334!GO:0008092;cytoskeletal protein binding;0.000430182608960573!GO:0030133;transport vesicle;0.000443192817741636!GO:0016310;phosphorylation;0.000463000159690877!GO:0016126;sterol biosynthetic process;0.000465371923461718!GO:0008250;oligosaccharyl transferase complex;0.00049610746748845!GO:0000902;cell morphogenesis;0.000509547652596506!GO:0032989;cellular structure morphogenesis;0.000509547652596506!GO:0030176;integral to endoplasmic reticulum membrane;0.000653964860801838!GO:0030118;clathrin coat;0.000705128201692106!GO:0051920;peroxiredoxin activity;0.000806809105794306!GO:0003682;chromatin binding;0.000843849453646335!GO:0005791;rough endoplasmic reticulum;0.0008505773097941!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000861737000545512!GO:0046467;membrane lipid biosynthetic process;0.000873449989660653!GO:0006414;translational elongation;0.000893037321148134!GO:0044262;cellular carbohydrate metabolic process;0.000906408041812652!GO:0019843;rRNA binding;0.000912802315376718!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000913569561764569!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000988681861877891!GO:0051168;nuclear export;0.00102422404021505!GO:0043681;protein import into mitochondrion;0.00104283001379986!GO:0051789;response to protein stimulus;0.00104354694271978!GO:0006986;response to unfolded protein;0.00104354694271978!GO:0045892;negative regulation of transcription, DNA-dependent;0.00115140577339001!GO:0006612;protein targeting to membrane;0.00115696591200081!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00116767888174779!GO:0040008;regulation of growth;0.00116767888174779!GO:0048471;perinuclear region of cytoplasm;0.00118443758924498!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00120413581033069!GO:0003684;damaged DNA binding;0.0012454383777651!GO:0043021;ribonucleoprotein binding;0.0012454383777651!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00136951648535936!GO:0008610;lipid biosynthetic process;0.00138159407763518!GO:0000323;lytic vacuole;0.00140494336770857!GO:0005764;lysosome;0.00140494336770857!GO:0005684;U2-dependent spliceosome;0.00148804776756213!GO:0046489;phosphoinositide biosynthetic process;0.00153630814119386!GO:0006626;protein targeting to mitochondrion;0.00162483850890728!GO:0018196;peptidyl-asparagine modification;0.00162483850890728!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00162483850890728!GO:0008186;RNA-dependent ATPase activity;0.00164646243757042!GO:0016044;membrane organization and biogenesis;0.0016692275748336!GO:0045893;positive regulation of transcription, DNA-dependent;0.0016692275748336!GO:0045941;positive regulation of transcription;0.00168477642126481!GO:0032561;guanyl ribonucleotide binding;0.00175261835629984!GO:0019001;guanyl nucleotide binding;0.00175261835629984!GO:0006839;mitochondrial transport;0.00175261835629984!GO:0030132;clathrin coat of coated pit;0.00181591671947698!GO:0001726;ruffle;0.00193220006423497!GO:0030880;RNA polymerase complex;0.00198518864974521!GO:0003678;DNA helicase activity;0.00198518864974521!GO:0006695;cholesterol biosynthetic process;0.00198637563997724!GO:0005769;early endosome;0.0021183603869896!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00220559229264428!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00220559229264428!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00220559229264428!GO:0009165;nucleotide biosynthetic process;0.00225555993566532!GO:0030027;lamellipodium;0.00225555993566532!GO:0005885;Arp2/3 protein complex;0.00226340366318311!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00232673993745931!GO:0030029;actin filament-based process;0.00233607995663883!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253155970656596!GO:0004576;oligosaccharyl transferase activity;0.00253155970656596!GO:0048468;cell development;0.00257922959079246!GO:0065007;biological regulation;0.00262328541842419!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0026737686323428!GO:0007006;mitochondrial membrane organization and biogenesis;0.00277325295719929!GO:0003729;mRNA binding;0.00284253547369344!GO:0015631;tubulin binding;0.00284779502704776!GO:0006350;transcription;0.00300170788878895!GO:0005048;signal sequence binding;0.00309579298957634!GO:0030521;androgen receptor signaling pathway;0.0031602037050617!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00319511301508336!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00319511301508336!GO:0006091;generation of precursor metabolites and energy;0.00348085137837938!GO:0035258;steroid hormone receptor binding;0.0034962667548266!GO:0017166;vinculin binding;0.00360024204849957!GO:0040029;regulation of gene expression, epigenetic;0.00372499071930039!GO:0031323;regulation of cellular metabolic process;0.00388448554502151!GO:0031902;late endosome membrane;0.00388448554502151!GO:0007346;regulation of progression through mitotic cell cycle;0.00414944502741634!GO:0004004;ATP-dependent RNA helicase activity;0.00425648729104383!GO:0042802;identical protein binding;0.00431236422981653!GO:0016787;hydrolase activity;0.00439985604852048!GO:0032508;DNA duplex unwinding;0.00442183579774214!GO:0032392;DNA geometric change;0.00442183579774214!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00458059421161566!GO:0000428;DNA-directed RNA polymerase complex;0.00458059421161566!GO:0043488;regulation of mRNA stability;0.00464285879701251!GO:0043487;regulation of RNA stability;0.00464285879701251!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00470405101198093!GO:0006402;mRNA catabolic process;0.0048473255131034!GO:0030658;transport vesicle membrane;0.00490699884541164!GO:0048522;positive regulation of cellular process;0.0051099267519445!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00521237675710356!GO:0006383;transcription from RNA polymerase III promoter;0.00529800154850801!GO:0007088;regulation of mitosis;0.00576284650372842!GO:0007264;small GTPase mediated signal transduction;0.00587514465136034!GO:0031968;organelle outer membrane;0.0059586959352532!GO:0051252;regulation of RNA metabolic process;0.0059883047545457!GO:0007017;microtubule-based process;0.0059883047545457!GO:0031124;mRNA 3'-end processing;0.00603832374832657!GO:0008033;tRNA processing;0.00616922786787483!GO:0006740;NADPH regeneration;0.00623066748411492!GO:0006098;pentose-phosphate shunt;0.00623066748411492!GO:0000082;G1/S transition of mitotic cell cycle;0.00634365528870693!GO:0043284;biopolymer biosynthetic process;0.00649898664458972!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00656287910541272!GO:0030663;COPI coated vesicle membrane;0.00656287910541272!GO:0030126;COPI vesicle coat;0.00656287910541272!GO:0016741;transferase activity, transferring one-carbon groups;0.00657716029565096!GO:0044452;nucleolar part;0.00673736721545843!GO:0005741;mitochondrial outer membrane;0.00682083665455568!GO:0000910;cytokinesis;0.00688181031092865!GO:0003690;double-stranded DNA binding;0.00713591516492939!GO:0019867;outer membrane;0.00713591516492939!GO:0008168;methyltransferase activity;0.00719816571385719!GO:0030119;AP-type membrane coat adaptor complex;0.00725234657873116!GO:0030137;COPI-coated vesicle;0.00771208794979635!GO:0031072;heat shock protein binding;0.00799860144698425!GO:0006268;DNA unwinding during replication;0.00802524971326794!GO:0005869;dynactin complex;0.00804607353037684!GO:0016272;prefoldin complex;0.00814696922846256!GO:0006891;intra-Golgi vesicle-mediated transport;0.00820910249514331!GO:0051101;regulation of DNA binding;0.00821082811545298!GO:0006595;polyamine metabolic process;0.00841513312928419!GO:0042158;lipoprotein biosynthetic process;0.0086303717739866!GO:0016197;endosome transport;0.00867815297365544!GO:0007093;mitotic cell cycle checkpoint;0.00949067669567957!GO:0006979;response to oxidative stress;0.00962876308505157!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00967523454917022!GO:0030131;clathrin adaptor complex;0.00973768280764615!GO:0016860;intramolecular oxidoreductase activity;0.00993195070300252!GO:0006790;sulfur metabolic process;0.00997984019449901!GO:0048487;beta-tubulin binding;0.0100371349614931!GO:0048500;signal recognition particle;0.0101547813300343!GO:0030660;Golgi-associated vesicle membrane;0.0104338765592993!GO:0000059;protein import into nucleus, docking;0.0104338765592993!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0104603743133305!GO:0030134;ER to Golgi transport vesicle;0.0106636158170081!GO:0043414;biopolymer methylation;0.0107732561273368!GO:0051087;chaperone binding;0.0109881332351808!GO:0006650;glycerophospholipid metabolic process;0.0109953463840967!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0112335402457437!GO:0007040;lysosome organization and biogenesis;0.0114801392341!GO:0007050;cell cycle arrest;0.0120247143206545!GO:0005862;muscle thin filament tropomyosin;0.0120988302643447!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0130586088942331!GO:0004003;ATP-dependent DNA helicase activity;0.013198289870965!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.01326958759441!GO:0051098;regulation of binding;0.0133567170747518!GO:0003711;transcription elongation regulator activity;0.0134853469419!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0138201989138274!GO:0006497;protein amino acid lipidation;0.0142040237164856!GO:0008312;7S RNA binding;0.0142040237164856!GO:0006352;transcription initiation;0.0142194155162426!GO:0006506;GPI anchor biosynthetic process;0.0144565184902578!GO:0010468;regulation of gene expression;0.0145083669055768!GO:0030125;clathrin vesicle coat;0.0150035724996856!GO:0030665;clathrin coated vesicle membrane;0.0150035724996856!GO:0006220;pyrimidine nucleotide metabolic process;0.0153618781930155!GO:0046483;heterocycle metabolic process;0.0159114097392623!GO:0006289;nucleotide-excision repair;0.0159157136572835!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0161900912010561!GO:0051539;4 iron, 4 sulfur cluster binding;0.0164180219388955!GO:0051287;NAD binding;0.0165232372759327!GO:0065009;regulation of a molecular function;0.0169802658413843!GO:0030127;COPII vesicle coat;0.0171459527944139!GO:0012507;ER to Golgi transport vesicle membrane;0.0171459527944139!GO:0006302;double-strand break repair;0.0173511242087123!GO:0032259;methylation;0.0173799691728128!GO:0006778;porphyrin metabolic process;0.0173799691728128!GO:0033013;tetrapyrrole metabolic process;0.0173799691728128!GO:0000084;S phase of mitotic cell cycle;0.0173799691728128!GO:0006509;membrane protein ectodomain proteolysis;0.0173799691728128!GO:0033619;membrane protein proteolysis;0.0173799691728128!GO:0051052;regulation of DNA metabolic process;0.0173999392336186!GO:0006505;GPI anchor metabolic process;0.0174108924898044!GO:0008286;insulin receptor signaling pathway;0.0175307541683926!GO:0031301;integral to organelle membrane;0.0175956849471647!GO:0006310;DNA recombination;0.01787032342!GO:0000792;heterochromatin;0.0180607863100472!GO:0006779;porphyrin biosynthetic process;0.0183202943377948!GO:0033014;tetrapyrrole biosynthetic process;0.0183202943377948!GO:0000086;G2/M transition of mitotic cell cycle;0.0184308853370577!GO:0007033;vacuole organization and biogenesis;0.0186674866394076!GO:0003746;translation elongation factor activity;0.019092484009231!GO:0007052;mitotic spindle organization and biogenesis;0.0194943257905641!GO:0051540;metal cluster binding;0.019589634460072!GO:0051536;iron-sulfur cluster binding;0.019589634460072!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0197902666238222!GO:0045047;protein targeting to ER;0.0197902666238222!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0207592665159526!GO:0008139;nuclear localization sequence binding;0.0209080546649608!GO:0006284;base-excision repair;0.0217396256205519!GO:0006611;protein export from nucleus;0.0220875386586134!GO:0006338;chromatin remodeling;0.0221862728161398!GO:0000123;histone acetyltransferase complex;0.0224174495209092!GO:0006401;RNA catabolic process;0.0227011748669469!GO:0003756;protein disulfide isomerase activity;0.0227279609574571!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227279609574571!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0227279609574571!GO:0030384;phosphoinositide metabolic process;0.0232266614647637!GO:0033673;negative regulation of kinase activity;0.0233159024006302!GO:0006469;negative regulation of protein kinase activity;0.0233159024006302!GO:0009303;rRNA transcription;0.0234921621093584!GO:0051128;regulation of cellular component organization and biogenesis;0.0235223373764497!GO:0050681;androgen receptor binding;0.0236430207189567!GO:0000228;nuclear chromosome;0.0236451131333558!GO:0031123;RNA 3'-end processing;0.0236451131333558!GO:0016569;covalent chromatin modification;0.0238806170050415!GO:0006007;glucose catabolic process;0.0242365350867779!GO:0043596;nuclear replication fork;0.0247933359598692!GO:0042393;histone binding;0.0253178298025604!GO:0051348;negative regulation of transferase activity;0.0253730248326062!GO:0007021;tubulin folding;0.0259241915834701!GO:0035267;NuA4 histone acetyltransferase complex;0.0261500526548416!GO:0008538;proteasome activator activity;0.0266417715459788!GO:0043189;H4/H2A histone acetyltransferase complex;0.0267476594218146!GO:0000049;tRNA binding;0.0268154545464735!GO:0008629;induction of apoptosis by intracellular signals;0.0279159736038296!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0284109093505866!GO:0003702;RNA polymerase II transcription factor activity;0.0288509096221369!GO:0006378;mRNA polyadenylation;0.028886195295684!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0289846022413887!GO:0000096;sulfur amino acid metabolic process;0.0289857712427606!GO:0006405;RNA export from nucleus;0.029026466311843!GO:0030518;steroid hormone receptor signaling pathway;0.0291395375961855!GO:0005774;vacuolar membrane;0.0291395375961855!GO:0019206;nucleoside kinase activity;0.0291903963998352!GO:0000209;protein polyubiquitination;0.0295763451922228!GO:0005832;chaperonin-containing T-complex;0.0295884688124535!GO:0004364;glutathione transferase activity;0.0303571958673492!GO:0004860;protein kinase inhibitor activity;0.0307414465877391!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0314157070747677!GO:0015992;proton transport;0.0315748627431918!GO:0030659;cytoplasmic vesicle membrane;0.031655448474944!GO:0000339;RNA cap binding;0.0317145853443345!GO:0045936;negative regulation of phosphate metabolic process;0.0318930105523747!GO:0031529;ruffle organization and biogenesis;0.0318930105523747!GO:0008022;protein C-terminus binding;0.0318930105523747!GO:0007059;chromosome segregation;0.0326448351636867!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0335409512732448!GO:0015399;primary active transmembrane transporter activity;0.0335409512732448!GO:0050662;coenzyme binding;0.0335409512732448!GO:0008047;enzyme activator activity;0.0336830578549514!GO:0006818;hydrogen transport;0.0342177669016608!GO:0032774;RNA biosynthetic process;0.034316575231704!GO:0042585;germinal vesicle;0.0350623935587774!GO:0006643;membrane lipid metabolic process;0.035303910226234!GO:0006082;organic acid metabolic process;0.0353343727191861!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0358125172679143!GO:0015002;heme-copper terminal oxidase activity;0.0358125172679143!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0358125172679143!GO:0004129;cytochrome-c oxidase activity;0.0358125172679143!GO:0019752;carboxylic acid metabolic process;0.0368017528813281!GO:0000118;histone deacetylase complex;0.0372436244102171!GO:0006730;one-carbon compound metabolic process;0.03734779855201!GO:0009112;nucleobase metabolic process;0.03734779855201!GO:0007243;protein kinase cascade;0.03734779855201!GO:0008154;actin polymerization and/or depolymerization;0.03734779855201!GO:0046519;sphingoid metabolic process;0.03734779855201!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0375344497594437!GO:0006351;transcription, DNA-dependent;0.0378182218565969!GO:0030508;thiol-disulfide exchange intermediate activity;0.0378612722756764!GO:0006144;purine base metabolic process;0.0389430506937783!GO:0016585;chromatin remodeling complex;0.0390925296562011!GO:0046426;negative regulation of JAK-STAT cascade;0.0394001948644271!GO:0006275;regulation of DNA replication;0.0394559532491791!GO:0000776;kinetochore;0.0402460425994358!GO:0042168;heme metabolic process;0.040632153017399!GO:0035035;histone acetyltransferase binding;0.0415982331508125!GO:0033559;unsaturated fatty acid metabolic process;0.0420132504571012!GO:0006636;unsaturated fatty acid biosynthetic process;0.0420132504571012!GO:0005581;collagen;0.0422161197648292!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0422161197648292!GO:0010257;NADH dehydrogenase complex assembly;0.0422161197648292!GO:0033108;mitochondrial respiratory chain complex assembly;0.0422161197648292!GO:0016408;C-acyltransferase activity;0.0426105907023931!GO:0005875;microtubule associated complex;0.0428305236532625!GO:0006672;ceramide metabolic process;0.0428842685269898!GO:0044433;cytoplasmic vesicle part;0.0432378214349753!GO:0006520;amino acid metabolic process;0.0432498987209462!GO:0016125;sterol metabolic process;0.0435854047778477!GO:0006783;heme biosynthetic process;0.0435854047778477!GO:0008652;amino acid biosynthetic process;0.0437036468762999!GO:0030032;lamellipodium biogenesis;0.0437036468762999!GO:0044454;nuclear chromosome part;0.0437104249610318!GO:0005784;translocon complex;0.043970343320818!GO:0046822;regulation of nucleocytoplasmic transport;0.0446002594027538!GO:0045792;negative regulation of cell size;0.0448764181440511!GO:0006720;isoprenoid metabolic process;0.0450391627360727!GO:0030911;TPR domain binding;0.0460517721479804!GO:0008632;apoptotic program;0.0464224378800758!GO:0030041;actin filament polymerization;0.0464224378800758!GO:0032906;transforming growth factor-beta2 production;0.0472981369824618!GO:0032909;regulation of transforming growth factor-beta2 production;0.0472981369824618!GO:0051320;S phase;0.0474624022513594!GO:0030308;negative regulation of cell growth;0.0476993463989936!GO:0043433;negative regulation of transcription factor activity;0.0477374647839174!GO:0005637;nuclear inner membrane;0.0480188720475465!GO:0031371;ubiquitin conjugating enzyme complex;0.0480188720475465!GO:0006739;NADP metabolic process;0.0492055035797503!GO:0005758;mitochondrial intermembrane space;0.0493154438582627!GO:0008213;protein amino acid alkylation;0.0495364368206044!GO:0006479;protein amino acid methylation;0.0495364368206044!GO:0003923;GPI-anchor transamidase activity;0.0495364368206044!GO:0016255;attachment of GPI anchor to protein;0.0495364368206044!GO:0042765;GPI-anchor transamidase complex;0.0495364368206044!GO:0048011;nerve growth factor receptor signaling pathway;0.049696082818977!GO:0005996;monosaccharide metabolic process;0.0498469724459948 | |||
|sample_id=11500 | |sample_id=11500 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=cerebellum | |sample_tissue=cerebellum | ||
|top_motifs=GFI1:2.198589542;PBX1:1.75809496165;SOX{8,9,10}:1.41285396199;GTF2A1,2:1.38333002687;NFY{A,B,C}:1.38078413304;EBF1:1.36589979293;LEF1_TCF7_TCF7L1,2:1.34591039856;XCPE1{core}:1.31675025716;ZIC1..3:1.18592481417;MZF1:1.1273360465;POU5F1:1.08756242091;LHX3,4:0.990933374529;TLX1..3_NFIC{dimer}:0.984632928285;SOX17:0.979172314663;E2F1..5:0.935479488463;OCT4_SOX2{dimer}:0.933405446989;TFDP1:0.929897272394;GZF1:0.914925229515;SP1:0.913837733786;SOX2:0.905427846558;RREB1:0.874983705454;NKX2-3_NKX2-5:0.87101720749;NANOG:0.855713613949;GTF2I:0.77443624893;NKX6-1,2:0.695225523827;PATZ1:0.683483393454;ZNF384:0.67312045593;TFAP4:0.658222307348;MTE{core}:0.639576287614;TFAP2B:0.628147627896;VSX1,2:0.62369043695;PAX5:0.62317298458;TFAP2{A,C}:0.619190104088;MAZ:0.618133687007;TEAD1:0.613499316366;NRF1:0.593986662554;NR6A1:0.58351363398;T:0.582319961771;ZNF143:0.574626430412;GFI1B:0.543833172041;KLF4:0.539127578378;ZBTB6:0.52683488124;ZNF148:0.526086356297;CDC5L:0.489504271384;TFCP2:0.486303804573;HIC1:0.476682939158;PRRX1,2:0.467228944947;ESRRA:0.466183778223;STAT1,3:0.461482795445;GCM1,2:0.459388410634;PAX1,9:0.458534668036;FOXM1:0.452646917554;ZFP161:0.433028608421;NR5A1,2:0.431919361911;BREu{core}:0.423783792465;TBP:0.406870502084;MTF1:0.378154876681;SRF:0.364464790881;HOX{A5,B5}:0.35940932901;TBX4,5:0.355397893915;FOXL1:0.335442386423;EP300:0.333236480549;MED-1{core}:0.333100068457;RBPJ:0.32871887084;MYBL2:0.327921089656;HNF4A_NR2F1,2:0.311276906038;PAX8:0.3030237929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.302098081748;ONECUT1,2:0.296986472262;SPZ1:0.282529942379;NR3C1:0.275857507025;JUN:0.271044265431;SOX5:0.259817700375;IKZF1:0.253224335824;RFX1:0.244550124075;POU2F1..3:0.242343503714;HSF1,2:0.228583115126;ELK1,4_GABP{A,B1}:0.226040832789;REST:0.214457426112;NHLH1,2:0.208392333201;RXR{A,B,G}:0.199227730214;MYB:0.181840675837;TP53:0.170428138784;POU3F1..4:0.157365647689;HMX1:0.154997393254;CRX:0.153750411565;ESR1:0.14101857522;EN1,2:0.138677685385;DBP:0.132917622343;STAT2,4,6:0.120685587586;YY1:0.120397800596;NKX2-1,4:0.118653936003;SMAD1..7,9:0.116686552696;NR1H4:0.108097405807;RXRA_VDR{dimer}:0.100554603076;HAND1,2:0.0942646701882;TAL1_TCF{3,4,12}:0.0872991219771;PDX1:0.0689368658805;NFIX:0.0499329480896;CUX2:0.0411037578804;NKX2-2,8:0.0358460750653;MEF2{A,B,C,D}:0.0316421023776;TOPORS:0.0126200932304;HES1:-0.000486848224801;ADNP_IRX_SIX_ZHX:-0.000971845797594;ZNF238:-0.00401711952304;FOS_FOS{B,L1}_JUN{B,D}:-0.00570572457406;NFE2L2:-0.00969706571268;BACH2:-0.0102708600061;bHLH_family:-0.0379747026446;HNF1A:-0.0403241660338;ZNF423:-0.0406409924763;NKX3-2:-0.0481382144459;NFE2L1:-0.0760517916712;AR:-0.102929821305;FOXQ1:-0.111188024838;RUNX1..3:-0.117071096091;FOSL2:-0.118888472459;NANOG{mouse}:-0.121918238306;FOXD3:-0.136843746967;ATF6:-0.14623611158;AHR_ARNT_ARNT2:-0.14998258783;PRDM1:-0.154213766081;EGR1..3:-0.168598451079;PAX3,7:-0.173360502432;LMO2:-0.183954304527;NFE2:-0.230018270716;PAX6:-0.230780324148;UFEwm:-0.239983583707;GLI1..3:-0.246853737584;MYFfamily:-0.253583406834;POU1F1:-0.254001443869;NFIL3:-0.266609234101;XBP1:-0.268059308311;TGIF1:-0.272730173112;GATA6:-0.308923386289;STAT5{A,B}:-0.326536961214;NFKB1_REL_RELA:-0.347561821139;DMAP1_NCOR{1,2}_SMARC:-0.366483832706;FOXP1:-0.370799186235;NFATC1..3:-0.389222734688;HOX{A4,D4}:-0.390699103401;HOXA9_MEIS1:-0.394438759811;FOXP3:-0.406135368475;SNAI1..3:-0.432877183448;RORA:-0.439568609518;HMGA1,2:-0.453721707617;NKX3-1:-0.463490676796;CEBPA,B_DDIT3:-0.473236604138;HBP1_HMGB_SSRP1_UBTF:-0.482277042315;ETS1,2:-0.489559706541;HLF:-0.491250038917;SPIB:-0.494494167483;FOXA2:-0.512288938091;HOX{A6,A7,B6,B7}:-0.520803448584;CREB1:-0.533524676588;PAX2:-0.546471165484;RFX2..5_RFXANK_RFXAP:-0.571495267871;GATA4:-0.585708916583;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.594036300457;FOX{D1,D2}:-0.595036338758;ALX4:-0.636020052881;ATF4:-0.641106822397;PPARG:-0.662724911476;ELF1,2,4:-0.681636116421;ATF5_CREB3:-0.747469190196;IRF1,2:-0.748631143663;SPI1:-0.750420234276;PITX1..3:-0.77931064148;IRF7:-0.782412710373;POU6F1:-0.785912249823;AIRE:-0.794099494257;MAFB:-0.804468495265;PAX4:-0.823282130551;ATF2:-0.825697150689;HIF1A:-0.829157519898;MYOD1:-0.845789583067;FOXO1,3,4:-0.872983887115;IKZF2:-0.876336214879;TEF:-0.900188584328;ARID5B:-0.914804563402;ALX1:-0.928363509288;ZEB1:-0.955006867852;FOX{I1,J2}:-1.04180974447;EVI1:-1.12713877195;SREBF1,2:-1.14097815886;CDX1,2,4:-1.15445357796;BPTF:-1.15616335567;FOX{F1,F2,J1}:-1.1898653704;FOXN1:-1.36826494499;TLX2:-1.71401838499;ZBTB16:-1.88850203759 | |top_motifs=GFI1:2.198589542;PBX1:1.75809496165;SOX{8,9,10}:1.41285396199;GTF2A1,2:1.38333002687;NFY{A,B,C}:1.38078413304;EBF1:1.36589979293;LEF1_TCF7_TCF7L1,2:1.34591039856;XCPE1{core}:1.31675025716;ZIC1..3:1.18592481417;MZF1:1.1273360465;POU5F1:1.08756242091;LHX3,4:0.990933374529;TLX1..3_NFIC{dimer}:0.984632928285;SOX17:0.979172314663;E2F1..5:0.935479488463;OCT4_SOX2{dimer}:0.933405446989;TFDP1:0.929897272394;GZF1:0.914925229515;SP1:0.913837733786;SOX2:0.905427846558;RREB1:0.874983705454;NKX2-3_NKX2-5:0.87101720749;NANOG:0.855713613949;GTF2I:0.77443624893;NKX6-1,2:0.695225523827;PATZ1:0.683483393454;ZNF384:0.67312045593;TFAP4:0.658222307348;MTE{core}:0.639576287614;TFAP2B:0.628147627896;VSX1,2:0.62369043695;PAX5:0.62317298458;TFAP2{A,C}:0.619190104088;MAZ:0.618133687007;TEAD1:0.613499316366;NRF1:0.593986662554;NR6A1:0.58351363398;T:0.582319961771;ZNF143:0.574626430412;GFI1B:0.543833172041;KLF4:0.539127578378;ZBTB6:0.52683488124;ZNF148:0.526086356297;CDC5L:0.489504271384;TFCP2:0.486303804573;HIC1:0.476682939158;PRRX1,2:0.467228944947;ESRRA:0.466183778223;STAT1,3:0.461482795445;GCM1,2:0.459388410634;PAX1,9:0.458534668036;FOXM1:0.452646917554;ZFP161:0.433028608421;NR5A1,2:0.431919361911;BREu{core}:0.423783792465;TBP:0.406870502084;MTF1:0.378154876681;SRF:0.364464790881;HOX{A5,B5}:0.35940932901;TBX4,5:0.355397893915;FOXL1:0.335442386423;EP300:0.333236480549;MED-1{core}:0.333100068457;RBPJ:0.32871887084;MYBL2:0.327921089656;HNF4A_NR2F1,2:0.311276906038;PAX8:0.3030237929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.302098081748;ONECUT1,2:0.296986472262;SPZ1:0.282529942379;NR3C1:0.275857507025;JUN:0.271044265431;SOX5:0.259817700375;IKZF1:0.253224335824;RFX1:0.244550124075;POU2F1..3:0.242343503714;HSF1,2:0.228583115126;ELK1,4_GABP{A,B1}:0.226040832789;REST:0.214457426112;NHLH1,2:0.208392333201;RXR{A,B,G}:0.199227730214;MYB:0.181840675837;TP53:0.170428138784;POU3F1..4:0.157365647689;HMX1:0.154997393254;CRX:0.153750411565;ESR1:0.14101857522;EN1,2:0.138677685385;DBP:0.132917622343;STAT2,4,6:0.120685587586;YY1:0.120397800596;NKX2-1,4:0.118653936003;SMAD1..7,9:0.116686552696;NR1H4:0.108097405807;RXRA_VDR{dimer}:0.100554603076;HAND1,2:0.0942646701882;TAL1_TCF{3,4,12}:0.0872991219771;PDX1:0.0689368658805;NFIX:0.0499329480896;CUX2:0.0411037578804;NKX2-2,8:0.0358460750653;MEF2{A,B,C,D}:0.0316421023776;TOPORS:0.0126200932304;HES1:-0.000486848224801;ADNP_IRX_SIX_ZHX:-0.000971845797594;ZNF238:-0.00401711952304;FOS_FOS{B,L1}_JUN{B,D}:-0.00570572457406;NFE2L2:-0.00969706571268;BACH2:-0.0102708600061;bHLH_family:-0.0379747026446;HNF1A:-0.0403241660338;ZNF423:-0.0406409924763;NKX3-2:-0.0481382144459;NFE2L1:-0.0760517916712;AR:-0.102929821305;FOXQ1:-0.111188024838;RUNX1..3:-0.117071096091;FOSL2:-0.118888472459;NANOG{mouse}:-0.121918238306;FOXD3:-0.136843746967;ATF6:-0.14623611158;AHR_ARNT_ARNT2:-0.14998258783;PRDM1:-0.154213766081;EGR1..3:-0.168598451079;PAX3,7:-0.173360502432;LMO2:-0.183954304527;NFE2:-0.230018270716;PAX6:-0.230780324148;UFEwm:-0.239983583707;GLI1..3:-0.246853737584;MYFfamily:-0.253583406834;POU1F1:-0.254001443869;NFIL3:-0.266609234101;XBP1:-0.268059308311;TGIF1:-0.272730173112;GATA6:-0.308923386289;STAT5{A,B}:-0.326536961214;NFKB1_REL_RELA:-0.347561821139;DMAP1_NCOR{1,2}_SMARC:-0.366483832706;FOXP1:-0.370799186235;NFATC1..3:-0.389222734688;HOX{A4,D4}:-0.390699103401;HOXA9_MEIS1:-0.394438759811;FOXP3:-0.406135368475;SNAI1..3:-0.432877183448;RORA:-0.439568609518;HMGA1,2:-0.453721707617;NKX3-1:-0.463490676796;CEBPA,B_DDIT3:-0.473236604138;HBP1_HMGB_SSRP1_UBTF:-0.482277042315;ETS1,2:-0.489559706541;HLF:-0.491250038917;SPIB:-0.494494167483;FOXA2:-0.512288938091;HOX{A6,A7,B6,B7}:-0.520803448584;CREB1:-0.533524676588;PAX2:-0.546471165484;RFX2..5_RFXANK_RFXAP:-0.571495267871;GATA4:-0.585708916583;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.594036300457;FOX{D1,D2}:-0.595036338758;ALX4:-0.636020052881;ATF4:-0.641106822397;PPARG:-0.662724911476;ELF1,2,4:-0.681636116421;ATF5_CREB3:-0.747469190196;IRF1,2:-0.748631143663;SPI1:-0.750420234276;PITX1..3:-0.77931064148;IRF7:-0.782412710373;POU6F1:-0.785912249823;AIRE:-0.794099494257;MAFB:-0.804468495265;PAX4:-0.823282130551;ATF2:-0.825697150689;HIF1A:-0.829157519898;MYOD1:-0.845789583067;FOXO1,3,4:-0.872983887115;IKZF2:-0.876336214879;TEF:-0.900188584328;ARID5B:-0.914804563402;ALX1:-0.928363509288;ZEB1:-0.955006867852;FOX{I1,J2}:-1.04180974447;EVI1:-1.12713877195;SREBF1,2:-1.14097815886;CDX1,2,4:-1.15445357796;BPTF:-1.15616335567;FOX{F1,F2,J1}:-1.1898653704;FOXN1:-1.36826494499;TLX2:-1.71401838499;ZBTB16:-1.88850203759 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11500-119F6;search_select_hide=table117:FF:11500-119F6 | |||
}} | }} | ||
Latest revision as of 18:04, 4 June 2020
| Name: | Astrocyte - cerebellum, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11321 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11321
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11321
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.00993 |
| 10 | 10 | 0.00792 |
| 100 | 100 | 0.955 |
| 101 | 101 | 0.441 |
| 102 | 102 | 0.296 |
| 103 | 103 | 0.175 |
| 104 | 104 | 0.744 |
| 105 | 105 | 0.131 |
| 106 | 106 | 0.0291 |
| 107 | 107 | 0.875 |
| 108 | 108 | 0.181 |
| 109 | 109 | 0.19 |
| 11 | 11 | 0.194 |
| 110 | 110 | 0.765 |
| 111 | 111 | 0.018 |
| 112 | 112 | 0.0387 |
| 113 | 113 | 0.546 |
| 114 | 114 | 0.0096 |
| 115 | 115 | 0.762 |
| 116 | 116 | 0.812 |
| 117 | 117 | 0.0255 |
| 118 | 118 | 0.113 |
| 119 | 119 | 0.0317 |
| 12 | 12 | 0.905 |
| 120 | 120 | 0.967 |
| 121 | 121 | 0.426 |
| 122 | 122 | 0.916 |
| 123 | 123 | 0.00119 |
| 124 | 124 | 0.927 |
| 125 | 125 | 0.288 |
| 126 | 126 | 0.554 |
| 127 | 127 | 0.222 |
| 128 | 128 | 0.221 |
| 129 | 129 | 0.456 |
| 13 | 13 | 0.544 |
| 130 | 130 | 0.0233 |
| 131 | 131 | 0.658 |
| 132 | 132 | 0.91 |
| 133 | 133 | 0.383 |
| 134 | 134 | 0.227 |
| 135 | 135 | 0.605 |
| 136 | 136 | 0.894 |
| 137 | 137 | 0.0595 |
| 138 | 138 | 0.0511 |
| 139 | 139 | 4.57678e-4 |
| 14 | 14 | 0.85 |
| 140 | 140 | 0.0786 |
| 141 | 141 | 0.384 |
| 142 | 142 | 0.598 |
| 143 | 143 | 0.285 |
| 144 | 144 | 0.84 |
| 145 | 145 | 0.548 |
| 146 | 146 | 0.42 |
| 147 | 147 | 0.98 |
| 148 | 148 | 0.00804 |
| 149 | 149 | 0.429 |
| 15 | 15 | 0.101 |
| 150 | 150 | 0.83 |
| 151 | 151 | 0.272 |
| 152 | 152 | 0.276 |
| 153 | 153 | 0.121 |
| 154 | 154 | 0.306 |
| 155 | 155 | 0.0159 |
| 156 | 156 | 0.768 |
| 157 | 157 | 0.77 |
| 158 | 158 | 0.0696 |
| 159 | 159 | 0.928 |
| 16 | 16 | 0.262 |
| 160 | 160 | 0.853 |
| 161 | 161 | 0.543 |
| 162 | 162 | 0.775 |
| 163 | 163 | 0.689 |
| 164 | 164 | 0.0313 |
| 165 | 165 | 0.129 |
| 166 | 166 | 0.964 |
| 167 | 167 | 0.238 |
| 168 | 168 | 0.499 |
| 169 | 169 | 0.545 |
| 17 | 17 | 0.207 |
| 18 | 18 | 0.243 |
| 19 | 19 | 0.925 |
| 2 | 2 | 0.974 |
| 20 | 20 | 0.646 |
| 21 | 21 | 0.285 |
| 22 | 22 | 0.835 |
| 23 | 23 | 0.221 |
| 24 | 24 | 0.635 |
| 25 | 25 | 0.477 |
| 26 | 26 | 0.429 |
| 27 | 27 | 0.728 |
| 28 | 28 | 0.446 |
| 29 | 29 | 0.131 |
| 3 | 3 | 0.0458 |
| 30 | 30 | 0.118 |
| 31 | 31 | 0.803 |
| 32 | 32 | 0.564 |
| 33 | 33 | 0.864 |
| 34 | 34 | 0.641 |
| 35 | 35 | 0.109 |
| 36 | 36 | 0.114 |
| 37 | 37 | 0.0293 |
| 38 | 38 | 0.384 |
| 39 | 39 | 0.73 |
| 4 | 4 | 0.818 |
| 40 | 40 | 0.685 |
| 41 | 41 | 0.295 |
| 42 | 42 | 0.225 |
| 43 | 43 | 0.123 |
| 44 | 44 | 0.183 |
| 45 | 45 | 0.967 |
| 46 | 46 | 0.197 |
| 47 | 47 | 0.234 |
| 48 | 48 | 0.355 |
| 49 | 49 | 0.092 |
| 5 | 5 | 0.177 |
| 50 | 50 | 0.676 |
| 51 | 51 | 0.562 |
| 52 | 52 | 0.621 |
| 53 | 53 | 0.299 |
| 54 | 54 | 0.407 |
| 55 | 55 | 0.587 |
| 56 | 56 | 0.752 |
| 57 | 57 | 0.418 |
| 58 | 58 | 0.0877 |
| 59 | 59 | 0.801 |
| 6 | 6 | 0.497 |
| 60 | 60 | 0.119 |
| 61 | 61 | 0.0752 |
| 62 | 62 | 0.0406 |
| 63 | 63 | 0.3 |
| 64 | 64 | 0.748 |
| 65 | 65 | 0.4 |
| 66 | 66 | 0.154 |
| 67 | 67 | 0.401 |
| 68 | 68 | 0.399 |
| 69 | 69 | 0.864 |
| 7 | 7 | 0.504 |
| 70 | 70 | 0.021 |
| 71 | 71 | 0.0602 |
| 72 | 72 | 0.284 |
| 73 | 73 | 0.057 |
| 74 | 74 | 0.497 |
| 75 | 75 | 0.0022 |
| 76 | 76 | 0.0173 |
| 77 | 77 | 0.711 |
| 78 | 78 | 0.0444 |
| 79 | 79 | 0.402 |
| 8 | 8 | 0.355 |
| 80 | 80 | 0.657 |
| 81 | 81 | 0.342 |
| 82 | 82 | 0.0448 |
| 83 | 83 | 0.847 |
| 84 | 84 | 0.564 |
| 85 | 85 | 0.0376 |
| 86 | 86 | 0.0893 |
| 87 | 87 | 0.912 |
| 88 | 88 | 0.516 |
| 89 | 89 | 0.799 |
| 9 | 9 | 0.832 |
| 90 | 90 | 0.00205 |
| 91 | 91 | 0.541 |
| 92 | 92 | 0.0493 |
| 93 | 93 | 0.306 |
| 94 | 94 | 0.255 |
| 95 | 95 | 0.0276 |
| 96 | 96 | 0.149 |
| 97 | 97 | 0.886 |
| 98 | 98 | 0.765 |
| 99 | 99 | 0.115 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11321
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000195 human astrocyte of the cerebellum sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002603 (astrocyte of the cerebellum)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002037 (cerebellum)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000195 (human astrocyte of the cerebellum sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
