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{{f5samples
{{f5samples
|id=11661
|DRA_sample_Accession=CAGE@SAMD00004940
|name=Astrocyte - cerebellum, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004940
|sample_id=FF:11661-122F5
|accession_numbers=CAGE;DRX008114;DRR008986;DRZ000411;DRZ001796;DRZ011761;DRZ013146
|rna_tube_id=122F5
|accession_numbers_RNASeq=sRNA-Seq;DRX037084;DRR041450;DRZ007092
|rna_box=122
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002037,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028
|rna_position=F5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000128,CL:0000126,CL:0000125,CL:0000255,CL:0000127,CL:0002603
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:5852
|rna_catalog_number=SC1815
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=cerebellum
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.5
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=astrocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.279
|sample_note=
|profile_hcage=CNhs12117,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000030,CL:0000055,CL:0000095,CL:0000123,CL:0000125,CL:0000126,CL:0000127,CL:0000128,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000243,CL:0000255,CL:0000333,CL:0000339,CL:0000548,CL:0002319,CL:0002321,CL:0002371,CL:0002453,CL:0002603
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001895,UBERON:0002028,UBERON:0002037,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002680,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0004121,UBERON:0004732,UBERON:0004733,UBERON:0005068,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000195
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000127;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002603;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor3.CNhs12117.11661-122F5.hg38.nobarcode.ctss.bed.gz
|id=FF:11661-122F5
|is_a=EFO:0002091;;FF:0000195
|is_obsolete=
|library_id=CNhs12117
|library_id_phase_based=2:CNhs12117
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11661
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTGAAA.11661
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11661
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTGAAA.11661
|name=Astrocyte - cerebellum, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12117,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10006,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=122
|rna_catalog_number=SC1815
|rna_concentration=1.279
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=lot:5852
|rna_od260/230=
|rna_od260/280=
|rna_position=F5
|rna_rin=9.5
|rna_sample_type=total RNA
|rna_tube_id=122F5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.GTGAAA
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=astrocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.84437160347891e-208!GO:0005737;cytoplasm;6.93093734695666e-168!GO:0043226;organelle;2.88595181101819e-164!GO:0043229;intracellular organelle;4.24103060215622e-164!GO:0043231;intracellular membrane-bound organelle;5.6849136171365e-163!GO:0043227;membrane-bound organelle;1.37489880850108e-162!GO:0044444;cytoplasmic part;3.81951793204593e-116!GO:0044422;organelle part;1.85748627790305e-112!GO:0044446;intracellular organelle part;2.27958652632596e-111!GO:0032991;macromolecular complex;3.44431231701651e-77!GO:0005515;protein binding;3.59523058257783e-73!GO:0030529;ribonucleoprotein complex;7.47897757658248e-67!GO:0044237;cellular metabolic process;1.20743073563585e-65!GO:0044238;primary metabolic process;1.24014722071471e-65!GO:0043170;macromolecule metabolic process;6.11379144122103e-61!GO:0005739;mitochondrion;7.72724784196664e-61!GO:0005634;nucleus;1.81064086809776e-58!GO:0043233;organelle lumen;2.97157426790654e-54!GO:0031974;membrane-enclosed lumen;2.97157426790654e-54!GO:0016043;cellular component organization and biogenesis;2.20325205658916e-47!GO:0005840;ribosome;1.13819143462417e-46!GO:0044428;nuclear part;3.91563994026925e-46!GO:0031090;organelle membrane;7.44865448415536e-46!GO:0003723;RNA binding;1.58885806120547e-45!GO:0003735;structural constituent of ribosome;4.75261085357302e-42!GO:0044429;mitochondrial part;9.61558821817363e-42!GO:0043234;protein complex;2.12046019603883e-39!GO:0033279;ribosomal subunit;2.91673689948652e-36!GO:0006412;translation;3.57132517911403e-36!GO:0019538;protein metabolic process;3.15426086516011e-35!GO:0009058;biosynthetic process;4.76621489728511e-35!GO:0043283;biopolymer metabolic process;2.5807687003709e-34!GO:0031967;organelle envelope;3.10611756461907e-34!GO:0031975;envelope;5.73836580455579e-34!GO:0044249;cellular biosynthetic process;3.02773391791318e-32!GO:0015031;protein transport;9.04503594998848e-32!GO:0010467;gene expression;1.06566553329077e-31!GO:0033036;macromolecule localization;3.17087992227082e-31!GO:0044260;cellular macromolecule metabolic process;6.58797983956731e-31!GO:0009059;macromolecule biosynthetic process;7.37143055273182e-31!GO:0044267;cellular protein metabolic process;3.83284248505048e-30!GO:0006996;organelle organization and biogenesis;6.33811360015079e-30!GO:0031981;nuclear lumen;9.22469832126275e-30!GO:0006396;RNA processing;1.84952911374032e-29!GO:0008104;protein localization;2.96238960548662e-29!GO:0005829;cytosol;3.92870346050382e-29!GO:0045184;establishment of protein localization;9.94378979568807e-29!GO:0005740;mitochondrial envelope;1.1666601826151e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.42468000534993e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.85852289477241e-27!GO:0019866;organelle inner membrane;2.80393301491814e-27!GO:0046907;intracellular transport;3.94410454798166e-27!GO:0031966;mitochondrial membrane;4.80488330039391e-27!GO:0005743;mitochondrial inner membrane;8.47545002211503e-26!GO:0065003;macromolecular complex assembly;8.70618702391685e-25!GO:0016071;mRNA metabolic process;2.15881769233404e-24!GO:0043228;non-membrane-bound organelle;8.03933195652855e-24!GO:0043232;intracellular non-membrane-bound organelle;8.03933195652855e-24!GO:0022607;cellular component assembly;6.92799710974537e-23!GO:0008380;RNA splicing;2.57601191113182e-22!GO:0006886;intracellular protein transport;8.99468238582671e-22!GO:0044445;cytosolic part;6.83415194278066e-21!GO:0006397;mRNA processing;7.08760207090146e-20!GO:0015934;large ribosomal subunit;7.53854525247102e-20!GO:0006119;oxidative phosphorylation;3.87394302316639e-19!GO:0006259;DNA metabolic process;5.19151904957671e-19!GO:0005654;nucleoplasm;1.25313947702622e-18!GO:0044455;mitochondrial membrane part;5.01009058742289e-18!GO:0008134;transcription factor binding;5.78730962128879e-18!GO:0015935;small ribosomal subunit;1.72956711740947e-17!GO:0051649;establishment of cellular localization;1.76155834480984e-16!GO:0044451;nucleoplasm part;1.98225866272273e-16!GO:0051641;cellular localization;2.49259705698999e-16!GO:0012505;endomembrane system;2.83930152865595e-16!GO:0031980;mitochondrial lumen;3.10935828570629e-16!GO:0005759;mitochondrial matrix;3.10935828570629e-16!GO:0005681;spliceosome;4.06438761607736e-16!GO:0005783;endoplasmic reticulum;4.61148467697735e-16!GO:0048770;pigment granule;1.31228157200574e-15!GO:0042470;melanosome;1.31228157200574e-15!GO:0005746;mitochondrial respiratory chain;1.77699465886527e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.58953310141096e-15!GO:0003676;nucleic acid binding;4.29426168028762e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.03899510795972e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.36971914238035e-15!GO:0003954;NADH dehydrogenase activity;8.36971914238035e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.36971914238035e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.63121727665145e-15!GO:0005794;Golgi apparatus;1.45805297715523e-14!GO:0051186;cofactor metabolic process;2.52616618576108e-14!GO:0006457;protein folding;4.41736699039557e-14!GO:0007049;cell cycle;5.38704732114255e-14!GO:0016070;RNA metabolic process;8.90979890406272e-14!GO:0044432;endoplasmic reticulum part;1.05423998093076e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.97801942026363e-13!GO:0016874;ligase activity;2.59460743202119e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.30633429295508e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.35350540750575e-13!GO:0042773;ATP synthesis coupled electron transport;8.35350540750575e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.04098084274157e-12!GO:0045271;respiratory chain complex I;1.04098084274157e-12!GO:0005747;mitochondrial respiratory chain complex I;1.04098084274157e-12!GO:0006323;DNA packaging;1.64084307311681e-12!GO:0000166;nucleotide binding;2.57355958405817e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.62232902091063e-12!GO:0005761;mitochondrial ribosome;6.23547322478334e-12!GO:0000313;organellar ribosome;6.23547322478334e-12!GO:0051276;chromosome organization and biogenesis;7.11409893058677e-12!GO:0003712;transcription cofactor activity;7.16687131327213e-12!GO:0006605;protein targeting;8.63061180467532e-12!GO:0006512;ubiquitin cycle;1.24245055552518e-11!GO:0016462;pyrophosphatase activity;3.34881920263726e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.02837734842917e-11!GO:0005730;nucleolus;4.58911212435652e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.25121432169324e-11!GO:0006732;coenzyme metabolic process;5.52071348007185e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;5.61039235599188e-11!GO:0022402;cell cycle process;8.27819983075567e-11!GO:0017111;nucleoside-triphosphatase activity;9.95620432548646e-11!GO:0044265;cellular macromolecule catabolic process;1.08666132012798e-10!GO:0043412;biopolymer modification;1.18132359894899e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.65836002420214e-10!GO:0016192;vesicle-mediated transport;4.95858647859517e-10!GO:0051082;unfolded protein binding;5.13087169270222e-10!GO:0006366;transcription from RNA polymerase II promoter;7.00672647435663e-10!GO:0048523;negative regulation of cellular process;1.05143689658874e-09!GO:0006464;protein modification process;1.19706136321e-09!GO:0006333;chromatin assembly or disassembly;1.24255609506184e-09!GO:0065004;protein-DNA complex assembly;1.99829597812286e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.25689481988218e-09!GO:0048193;Golgi vesicle transport;2.58580826209853e-09!GO:0019941;modification-dependent protein catabolic process;2.61027913047425e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.61027913047425e-09!GO:0043285;biopolymer catabolic process;2.65711733278226e-09!GO:0005789;endoplasmic reticulum membrane;2.77903598571003e-09!GO:0012501;programmed cell death;3.27574131427002e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.6667619698117e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.75213259464867e-09!GO:0044257;cellular protein catabolic process;3.97408073681101e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.4892276328124e-09!GO:0000375;RNA splicing, via transesterification reactions;4.4892276328124e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.4892276328124e-09!GO:0022618;protein-RNA complex assembly;4.98380655467416e-09!GO:0044248;cellular catabolic process;5.55879628832742e-09!GO:0050794;regulation of cellular process;5.55879628832742e-09!GO:0009057;macromolecule catabolic process;5.63151876167595e-09!GO:0006915;apoptosis;5.64621823792222e-09!GO:0000278;mitotic cell cycle;7.41848419314088e-09!GO:0006334;nucleosome assembly;7.7067993762151e-09!GO:0031497;chromatin assembly;8.0778819993238e-09!GO:0032553;ribonucleotide binding;1.67728327983742e-08!GO:0032555;purine ribonucleotide binding;1.67728327983742e-08!GO:0008135;translation factor activity, nucleic acid binding;1.75508259350927e-08!GO:0051726;regulation of cell cycle;2.28009026431419e-08!GO:0005793;ER-Golgi intermediate compartment;2.4194871135219e-08!GO:0006913;nucleocytoplasmic transport;2.66280980839971e-08!GO:0000074;regulation of progression through cell cycle;2.68715432872517e-08!GO:0008219;cell death;3.31438446514455e-08!GO:0016265;death;3.31438446514455e-08!GO:0048519;negative regulation of biological process;3.36509849918572e-08!GO:0000785;chromatin;4.68131096203116e-08!GO:0030163;protein catabolic process;4.70904989443863e-08!GO:0051169;nuclear transport;6.03721973148845e-08!GO:0017038;protein import;6.88840031742531e-08!GO:0017076;purine nucleotide binding;7.00164251657491e-08!GO:0016564;transcription repressor activity;8.11730449843276e-08!GO:0051188;cofactor biosynthetic process;1.0179966661847e-07!GO:0009055;electron carrier activity;1.12687318484783e-07!GO:0043687;post-translational protein modification;1.13654897144425e-07!GO:0006461;protein complex assembly;1.22568479311571e-07!GO:0003714;transcription corepressor activity;1.28289282653343e-07!GO:0044427;chromosomal part;1.36404821607907e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.55443081668703e-07!GO:0050789;regulation of biological process;1.78298818876507e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.90556788467254e-07!GO:0005694;chromosome;2.47298261235643e-07!GO:0044431;Golgi apparatus part;2.8452457463618e-07!GO:0005635;nuclear envelope;2.9551527128783e-07!GO:0006163;purine nucleotide metabolic process;5.33805722968892e-07!GO:0031252;leading edge;5.47522591207397e-07!GO:0031965;nuclear membrane;6.46607265136172e-07!GO:0009150;purine ribonucleotide metabolic process;6.46607265136172e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.2628060751228e-07!GO:0008565;protein transporter activity;9.50305860658928e-07!GO:0007005;mitochondrion organization and biogenesis;1.00785867195878e-06!GO:0031324;negative regulation of cellular metabolic process;1.07834792954584e-06!GO:0016568;chromatin modification;1.07834792954584e-06!GO:0009259;ribonucleotide metabolic process;1.09210807917843e-06!GO:0008639;small protein conjugating enzyme activity;1.1309202805937e-06!GO:0006399;tRNA metabolic process;1.15925510652004e-06!GO:0005524;ATP binding;1.34072367832487e-06!GO:0003924;GTPase activity;1.34218741796021e-06!GO:0048475;coated membrane;1.42203941348577e-06!GO:0030117;membrane coat;1.42203941348577e-06!GO:0016604;nuclear body;1.42509255512117e-06!GO:0032559;adenyl ribonucleotide binding;1.59902312784321e-06!GO:0005788;endoplasmic reticulum lumen;1.60417019725253e-06!GO:0016049;cell growth;1.62914602863464e-06!GO:0008361;regulation of cell size;1.75072127667005e-06!GO:0004842;ubiquitin-protein ligase activity;1.79310107893396e-06!GO:0045786;negative regulation of progression through cell cycle;1.89644447064707e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.89644447064707e-06!GO:0005667;transcription factor complex;2.0076544664154e-06!GO:0009141;nucleoside triphosphate metabolic process;2.14512093976324e-06!GO:0006164;purine nucleotide biosynthetic process;2.41102636289285e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.51196994481405e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.54761190996052e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.54761190996052e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.54761190996052e-06!GO:0042254;ribosome biogenesis and assembly;2.70961187495349e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.88513996467297e-06!GO:0016481;negative regulation of transcription;2.98294972833106e-06!GO:0006974;response to DNA damage stimulus;3.55180377851276e-06!GO:0015986;ATP synthesis coupled proton transport;3.57630928897318e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.57630928897318e-06!GO:0030120;vesicle coat;3.5835145419684e-06!GO:0030662;coated vesicle membrane;3.5835145419684e-06!GO:0019787;small conjugating protein ligase activity;3.60340018009009e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.69133644410983e-06!GO:0003743;translation initiation factor activity;5.57379299569262e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.57379299569262e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.57379299569262e-06!GO:0009260;ribonucleotide biosynthetic process;6.53502104218848e-06!GO:0065002;intracellular protein transport across a membrane;6.86280627474644e-06!GO:0016740;transferase activity;7.26691407440216e-06!GO:0030554;adenyl nucleotide binding;7.26691407440216e-06!GO:0009060;aerobic respiration;7.44601448323293e-06!GO:0005773;vacuole;7.44601448323293e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.629258365062e-06!GO:0045259;proton-transporting ATP synthase complex;7.74951346965094e-06!GO:0005905;coated pit;7.93715042438408e-06!GO:0005768;endosome;8.17243746262206e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.80401901423941e-06!GO:0043038;amino acid activation;9.03315562420864e-06!GO:0006418;tRNA aminoacylation for protein translation;9.03315562420864e-06!GO:0043039;tRNA aminoacylation;9.03315562420864e-06!GO:0009142;nucleoside triphosphate biosynthetic process;9.28000306746957e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.28000306746957e-06!GO:0044453;nuclear membrane part;1.01265876047867e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.1432492573642e-05!GO:0022403;cell cycle phase;1.15581884417064e-05!GO:0016881;acid-amino acid ligase activity;1.20646568683205e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.34300474803508e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39871327830742e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39871327830742e-05!GO:0000139;Golgi membrane;1.5031433131384e-05!GO:0006446;regulation of translational initiation;1.57671093680634e-05!GO:0042981;regulation of apoptosis;1.58405701094021e-05!GO:0046034;ATP metabolic process;1.58405701094021e-05!GO:0019829;cation-transporting ATPase activity;1.66127391940594e-05!GO:0009108;coenzyme biosynthetic process;1.66382153806679e-05!GO:0009892;negative regulation of metabolic process;1.68205928361594e-05!GO:0031988;membrane-bound vesicle;1.70634481569469e-05!GO:0043067;regulation of programmed cell death;1.75449512491034e-05!GO:0045333;cellular respiration;2.14799426314096e-05!GO:0006260;DNA replication;2.15040034641568e-05!GO:0016563;transcription activator activity;2.24816262998169e-05!GO:0016607;nuclear speck;2.43401178177376e-05!GO:0003713;transcription coactivator activity;2.4726744583069e-05!GO:0007067;mitosis;2.48809559778411e-05!GO:0000087;M phase of mitotic cell cycle;2.58575881141159e-05!GO:0001558;regulation of cell growth;2.68522084479768e-05!GO:0006413;translational initiation;3.46946101551495e-05!GO:0006754;ATP biosynthetic process;3.4907178845023e-05!GO:0006753;nucleoside phosphate metabolic process;3.4907178845023e-05!GO:0005762;mitochondrial large ribosomal subunit;3.54045626468317e-05!GO:0000315;organellar large ribosomal subunit;3.54045626468317e-05!GO:0015630;microtubule cytoskeleton;3.68738982542019e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.93163787937458e-05!GO:0006752;group transfer coenzyme metabolic process;4.60797077600808e-05!GO:0015078;hydrogen ion transmembrane transporter activity;4.74246445600806e-05!GO:0000902;cell morphogenesis;5.35989802659542e-05!GO:0032989;cellular structure morphogenesis;5.35989802659542e-05!GO:0043069;negative regulation of programmed cell death;5.37490536626443e-05!GO:0007010;cytoskeleton organization and biogenesis;5.37490536626443e-05!GO:0000323;lytic vacuole;5.65111292554258e-05!GO:0005764;lysosome;5.65111292554258e-05!GO:0003697;single-stranded DNA binding;5.67822200761194e-05!GO:0006606;protein import into nucleus;5.87637901807453e-05!GO:0044440;endosomal part;6.15069389169863e-05!GO:0010008;endosome membrane;6.15069389169863e-05!GO:0005770;late endosome;6.49296049317417e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.63162068601423e-05!GO:0008654;phospholipid biosynthetic process;6.71696266558459e-05!GO:0006281;DNA repair;6.86904616837228e-05!GO:0043066;negative regulation of apoptosis;6.86904616837228e-05!GO:0051301;cell division;6.8763941333596e-05!GO:0009056;catabolic process;6.96779526234238e-05!GO:0051170;nuclear import;7.60839389132114e-05!GO:0016853;isomerase activity;7.62232822506014e-05!GO:0009117;nucleotide metabolic process;7.84867099785252e-05!GO:0009719;response to endogenous stimulus;7.84867099785252e-05!GO:0000786;nucleosome;8.04945697433513e-05!GO:0004298;threonine endopeptidase activity;8.48357062368225e-05!GO:0006793;phosphorus metabolic process;9.14003167983555e-05!GO:0006796;phosphate metabolic process;9.14003167983555e-05!GO:0031410;cytoplasmic vesicle;9.34246348308787e-05!GO:0006916;anti-apoptosis;9.51974939781741e-05!GO:0031982;vesicle;0.000107108256792586!GO:0005643;nuclear pore;0.000121570533742349!GO:0051427;hormone receptor binding;0.000121570533742349!GO:0051329;interphase of mitotic cell cycle;0.000125588247953181!GO:0042623;ATPase activity, coupled;0.000131622500008312!GO:0016044;membrane organization and biogenesis;0.000135343287928046!GO:0048468;cell development;0.000149473096306088!GO:0044262;cellular carbohydrate metabolic process;0.000163927404288813!GO:0045892;negative regulation of transcription, DNA-dependent;0.000171231633903271!GO:0040008;regulation of growth;0.000181935351012361!GO:0016310;phosphorylation;0.000184559155590496!GO:0006099;tricarboxylic acid cycle;0.000190352344195272!GO:0046356;acetyl-CoA catabolic process;0.000190352344195272!GO:0051187;cofactor catabolic process;0.000209077361237255!GO:0030867;rough endoplasmic reticulum membrane;0.000212197852343071!GO:0006364;rRNA processing;0.000213619404639506!GO:0051325;interphase;0.00022378719977841!GO:0035257;nuclear hormone receptor binding;0.000225136046783513!GO:0009109;coenzyme catabolic process;0.000251057779233701!GO:0006084;acetyl-CoA metabolic process;0.000258022073421415!GO:0030036;actin cytoskeleton organization and biogenesis;0.000263148364817009!GO:0016491;oxidoreductase activity;0.000267860585706074!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00027727169006901!GO:0033116;ER-Golgi intermediate compartment membrane;0.00029111213575375!GO:0005525;GTP binding;0.000331614819180876!GO:0030133;transport vesicle;0.000373025267814862!GO:0008092;cytoskeletal protein binding;0.000374073703813464!GO:0000245;spliceosome assembly;0.000378526952710281!GO:0043623;cellular protein complex assembly;0.000415952905907916!GO:0016887;ATPase activity;0.000424785948550544!GO:0016859;cis-trans isomerase activity;0.000455528776020279!GO:0016072;rRNA metabolic process;0.000455575950282341!GO:0043566;structure-specific DNA binding;0.000477070931046754!GO:0032446;protein modification by small protein conjugation;0.000485788647468697!GO:0046474;glycerophospholipid biosynthetic process;0.000519525289203612!GO:0045454;cell redox homeostasis;0.000539815809024747!GO:0016567;protein ubiquitination;0.000539815809024747!GO:0005791;rough endoplasmic reticulum;0.000569211576330159!GO:0005798;Golgi-associated vesicle;0.000579675868545938!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000590303651733637!GO:0030118;clathrin coat;0.000606325518448595!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000647699985159543!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000710639671974536!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000783338433599069!GO:0019899;enzyme binding;0.000787697224540502!GO:0000314;organellar small ribosomal subunit;0.000787697224540502!GO:0005763;mitochondrial small ribosomal subunit;0.000787697224540502!GO:0030176;integral to endoplasmic reticulum membrane;0.000829373699723385!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00083934562143677!GO:0065007;biological regulation;0.00086600984854335!GO:0046930;pore complex;0.000890103663725499!GO:0008250;oligosaccharyl transferase complex;0.000958603743927877!GO:0019222;regulation of metabolic process;0.00109768101449927!GO:0007006;mitochondrial membrane organization and biogenesis;0.00112955387078337!GO:0007264;small GTPase mediated signal transduction;0.00113235433943119!GO:0030029;actin filament-based process;0.00116204744454508!GO:0003899;DNA-directed RNA polymerase activity;0.00116204744454508!GO:0031902;late endosome membrane;0.0012282949258557!GO:0030132;clathrin coat of coated pit;0.00127301633587541!GO:0050657;nucleic acid transport;0.00130094842320953!GO:0051236;establishment of RNA localization;0.00130094842320953!GO:0050658;RNA transport;0.00130094842320953!GO:0043681;protein import into mitochondrion;0.00130299213028196!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00132726472573485!GO:0051101;regulation of DNA binding;0.00133274645964481!GO:0006403;RNA localization;0.00135021842734575!GO:0008286;insulin receptor signaling pathway;0.00141033167642364!GO:0015980;energy derivation by oxidation of organic compounds;0.00141304211401493!GO:0051246;regulation of protein metabolic process;0.00145702395451672!GO:0051789;response to protein stimulus;0.00146915922874176!GO:0006986;response to unfolded protein;0.00146915922874176!GO:0030027;lamellipodium;0.00154201664725665!GO:0016779;nucleotidyltransferase activity;0.00154201664725665!GO:0040029;regulation of gene expression, epigenetic;0.00155621849358594!GO:0008610;lipid biosynthetic process;0.00161785296505785!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00174721732576347!GO:0048522;positive regulation of cellular process;0.00176486978434966!GO:0005774;vacuolar membrane;0.00181956322901725!GO:0001726;ruffle;0.00185421511761912!GO:0016126;sterol biosynthetic process;0.0020030600956549!GO:0019843;rRNA binding;0.00201220064321834!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00201324044545283!GO:0045941;positive regulation of transcription;0.00206070691493583!GO:0005769;early endosome;0.00209273008333787!GO:0051920;peroxiredoxin activity;0.00212489425894835!GO:0046467;membrane lipid biosynthetic process;0.00251975643292388!GO:0032561;guanyl ribonucleotide binding;0.00252277723128337!GO:0019001;guanyl nucleotide binding;0.00252277723128337!GO:0000279;M phase;0.00264279830609715!GO:0018196;peptidyl-asparagine modification;0.00274070111113334!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00274070111113334!GO:0045893;positive regulation of transcription, DNA-dependent;0.0027667919377208!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00281449121529511!GO:0006839;mitochondrial transport;0.00282794676729153!GO:0004386;helicase activity;0.00291063766047596!GO:0043488;regulation of mRNA stability;0.00291063766047596!GO:0043487;regulation of RNA stability;0.00291063766047596!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00294805334546844!GO:0008026;ATP-dependent helicase activity;0.00300069719090538!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00315235176682571!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00315235176682571!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00315235176682571!GO:0006626;protein targeting to mitochondrion;0.00324861618108113!GO:0046489;phosphoinositide biosynthetic process;0.00329154984200926!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00330811065008618!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00330811065008618!GO:0000151;ubiquitin ligase complex;0.00342089677521173!GO:0007050;cell cycle arrest;0.0034280882854455!GO:0005885;Arp2/3 protein complex;0.00384141904105327!GO:0005048;signal sequence binding;0.00384141904105327!GO:0007040;lysosome organization and biogenesis;0.00404984743258643!GO:0005765;lysosomal membrane;0.0040661247376141!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00407408549424506!GO:0006414;translational elongation;0.00432463933581773!GO:0006790;sulfur metabolic process;0.00449575200575258!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0045555424744391!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00480956397238286!GO:0004576;oligosaccharyl transferase activity;0.00497958645789081!GO:0006695;cholesterol biosynthetic process;0.00500431606093773!GO:0005741;mitochondrial outer membrane;0.00502744185938215!GO:0017166;vinculin binding;0.00506178400308072!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00527412949986151!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00528116002542058!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00528116002542058!GO:0044437;vacuolar part;0.00542969378584691!GO:0007033;vacuole organization and biogenesis;0.00555024357659995!GO:0006778;porphyrin metabolic process;0.00560499358044888!GO:0033013;tetrapyrrole metabolic process;0.00560499358044888!GO:0005874;microtubule;0.00569208209590254!GO:0048471;perinuclear region of cytoplasm;0.0060973931135872!GO:0043021;ribonucleoprotein binding;0.00638851948547636!GO:0033673;negative regulation of kinase activity;0.00638851948547636!GO:0006469;negative regulation of protein kinase activity;0.00638851948547636!GO:0031968;organelle outer membrane;0.00657412169758294!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00680008165347504!GO:0006402;mRNA catabolic process;0.00682871276029414!GO:0006779;porphyrin biosynthetic process;0.00690289142857229!GO:0033014;tetrapyrrole biosynthetic process;0.00690289142857229!GO:0006613;cotranslational protein targeting to membrane;0.00698247534011013!GO:0051348;negative regulation of transferase activity;0.00735163701461962!GO:0019867;outer membrane;0.00740793663593021!GO:0051168;nuclear export;0.00742485679753043!GO:0051098;regulation of binding;0.00748081365477321!GO:0007243;protein kinase cascade;0.0074961255627454!GO:0015631;tubulin binding;0.00767033317179707!GO:0006091;generation of precursor metabolites and energy;0.00812579312862488!GO:0030119;AP-type membrane coat adaptor complex;0.00823721893898136!GO:0043284;biopolymer biosynthetic process;0.00824067602424781!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00839724906928026!GO:0006979;response to oxidative stress;0.00879053155513968!GO:0031301;integral to organelle membrane;0.00887016103015291!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00907346430197129!GO:0006740;NADPH regeneration;0.00936117706537553!GO:0006098;pentose-phosphate shunt;0.00936117706537553!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00986417645939112!GO:0001666;response to hypoxia;0.00988313276238817!GO:0006650;glycerophospholipid metabolic process;0.00988313276238817!GO:0051028;mRNA transport;0.0101942914355895!GO:0048487;beta-tubulin binding;0.0111721752462102!GO:0016272;prefoldin complex;0.0111736649940288!GO:0030131;clathrin adaptor complex;0.0112078353455702!GO:0030137;COPI-coated vesicle;0.0112727160480712!GO:0030663;COPI coated vesicle membrane;0.0115347438294314!GO:0030126;COPI vesicle coat;0.0115347438294314!GO:0065009;regulation of a molecular function;0.0118433183910162!GO:0005813;centrosome;0.0120071755972992!GO:0005684;U2-dependent spliceosome;0.0120291959458899!GO:0006509;membrane protein ectodomain proteolysis;0.0120636648978838!GO:0033619;membrane protein proteolysis;0.0120636648978838!GO:0030658;transport vesicle membrane;0.0121727932679669!GO:0006595;polyamine metabolic process;0.0123795374731058!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0128128750062031!GO:0006350;transcription;0.0128431783162646!GO:0031543;peptidyl-proline dioxygenase activity;0.0129139986545154!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0132400056814407!GO:0015399;primary active transmembrane transporter activity;0.0132400056814407!GO:0030125;clathrin vesicle coat;0.0133443305836012!GO:0030665;clathrin coated vesicle membrane;0.0133443305836012!GO:0042802;identical protein binding;0.0136951529155768!GO:0003729;mRNA binding;0.0137699508950979!GO:0009165;nucleotide biosynthetic process;0.013884065081336!GO:0004860;protein kinase inhibitor activity;0.0140524664831824!GO:0003724;RNA helicase activity;0.0149257152199118!GO:0019798;procollagen-proline dioxygenase activity;0.0151181655562268!GO:0046483;heterocycle metabolic process;0.015361177664358!GO:0030880;RNA polymerase complex;0.0157953982325246!GO:0006897;endocytosis;0.0161198477839696!GO:0010324;membrane invagination;0.0161198477839696!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0164214302515044!GO:0008637;apoptotic mitochondrial changes;0.0166969070139633!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0171107366875137!GO:0042168;heme metabolic process;0.0183440823500153!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0187541083436471!GO:0003756;protein disulfide isomerase activity;0.0193324152453361!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193324152453361!GO:0006082;organic acid metabolic process;0.0194610828193405!GO:0005581;collagen;0.0195130864865773!GO:0016197;endosome transport;0.0195446095422031!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0203877208013397!GO:0015002;heme-copper terminal oxidase activity;0.0203877208013397!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0203877208013397!GO:0004129;cytochrome-c oxidase activity;0.0203877208013397!GO:0005815;microtubule organizing center;0.0206766443882439!GO:0043433;negative regulation of transcription factor activity;0.0207888458630406!GO:0031323;regulation of cellular metabolic process;0.0211047432620973!GO:0019752;carboxylic acid metabolic process;0.0211124524210344!GO:0043414;biopolymer methylation;0.0217506893048612!GO:0005862;muscle thin filament tropomyosin;0.0218284188065594!GO:0035258;steroid hormone receptor binding;0.0220598886721843!GO:0048518;positive regulation of biological process;0.0222284043698149!GO:0042158;lipoprotein biosynthetic process;0.0222852970402712!GO:0008033;tRNA processing;0.0222852970402712!GO:0006783;heme biosynthetic process;0.0227147477727441!GO:0006338;chromatin remodeling;0.0227147477727441!GO:0006007;glucose catabolic process;0.0229177395948994!GO:0046519;sphingoid metabolic process;0.0230327062675268!GO:0051252;regulation of RNA metabolic process;0.0231556157358084!GO:0030660;Golgi-associated vesicle membrane;0.0231556157358084!GO:0005637;nuclear inner membrane;0.0236454460588683!GO:0051059;NF-kappaB binding;0.0241629705807956!GO:0006383;transcription from RNA polymerase III promoter;0.0241629705807956!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.024165578506917!GO:0006506;GPI anchor biosynthetic process;0.0244166522093438!GO:0005869;dynactin complex;0.0249051700277074!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0252018595427384!GO:0010257;NADH dehydrogenase complex assembly;0.0252018595427384!GO:0033108;mitochondrial respiratory chain complex assembly;0.0252018595427384!GO:0032507;maintenance of cellular protein localization;0.0252609994261798!GO:0006891;intra-Golgi vesicle-mediated transport;0.0258468053765382!GO:0003746;translation elongation factor activity;0.0258687181317115!GO:0000049;tRNA binding;0.0261776702386328!GO:0008186;RNA-dependent ATPase activity;0.0277571062303017!GO:0033559;unsaturated fatty acid metabolic process;0.0289041800437354!GO:0006636;unsaturated fatty acid biosynthetic process;0.0289041800437354!GO:0019318;hexose metabolic process;0.0292311889260782!GO:0006672;ceramide metabolic process;0.0299657232009498!GO:0046822;regulation of nucleocytoplasmic transport;0.0303859539678474!GO:0007346;regulation of progression through mitotic cell cycle;0.0304901064734027!GO:0008629;induction of apoptosis by intracellular signals;0.0304952378586597!GO:0016584;nucleosome positioning;0.0304952378586597!GO:0030659;cytoplasmic vesicle membrane;0.0307349902888855!GO:0006401;RNA catabolic process;0.0307879817080729!GO:0008652;amino acid biosynthetic process;0.0307879817080729!GO:0000084;S phase of mitotic cell cycle;0.0313146888913577!GO:0030134;ER to Golgi transport vesicle;0.0314214676592314!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0314743491497895!GO:0005996;monosaccharide metabolic process;0.0321131377508458!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0321996282291518!GO:0000428;DNA-directed RNA polymerase complex;0.0321996282291518!GO:0051087;chaperone binding;0.0332044603096963!GO:0000096;sulfur amino acid metabolic process;0.0343865856735034!GO:0006730;one-carbon compound metabolic process;0.0348084510361023!GO:0006505;GPI anchor metabolic process;0.0350396445955485!GO:0016860;intramolecular oxidoreductase activity;0.0355566840848908!GO:0005819;spindle;0.0355686394982168!GO:0000118;histone deacetylase complex;0.0356267309192257!GO:0016363;nuclear matrix;0.0358623038593023!GO:0030521;androgen receptor signaling pathway;0.0362846645941257!GO:0006767;water-soluble vitamin metabolic process;0.0362846645941257!GO:0031418;L-ascorbic acid binding;0.0372009853758514!GO:0030032;lamellipodium biogenesis;0.0378574255520488!GO:0006289;nucleotide-excision repair;0.0378816520704227!GO:0051270;regulation of cell motility;0.0381201047652978!GO:0044433;cytoplasmic vesicle part;0.0394442740150033!GO:0004674;protein serine/threonine kinase activity;0.0398378242399151!GO:0030384;phosphoinositide metabolic process;0.0399013534536617!GO:0045792;negative regulation of cell size;0.0401902412574731!GO:0006612;protein targeting to membrane;0.0402833492602876!GO:0050178;phenylpyruvate tautomerase activity;0.0403417321291979!GO:0005975;carbohydrate metabolic process;0.0405841953814821!GO:0006352;transcription initiation;0.0405841953814821!GO:0000123;histone acetyltransferase complex;0.0407171201201922!GO:0031072;heat shock protein binding;0.040986926280703!GO:0008538;proteasome activator activity;0.0411996269463744!GO:0008139;nuclear localization sequence binding;0.041422562794341!GO:0001836;release of cytochrome c from mitochondria;0.0422499834349631!GO:0006733;oxidoreduction coenzyme metabolic process;0.0422499834349631!GO:0030308;negative regulation of cell growth;0.0422703148562979!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0427705796493554!GO:0032508;DNA duplex unwinding;0.0428635803297339!GO:0032392;DNA geometric change;0.0428635803297339!GO:0031529;ruffle organization and biogenesis;0.0429234859766258!GO:0006520;amino acid metabolic process;0.0434952777265602!GO:0006497;protein amino acid lipidation;0.0436429455782359!GO:0032259;methylation;0.0444198151882049!GO:0035035;histone acetyltransferase binding;0.0447824456377213!GO:0016741;transferase activity, transferring one-carbon groups;0.0449759350981218!GO:0051539;4 iron, 4 sulfur cluster binding;0.0449759350981218!GO:0022890;inorganic cation transmembrane transporter activity;0.0454869994006522!GO:0006643;membrane lipid metabolic process;0.0454869994006522!GO:0016585;chromatin remodeling complex;0.0454869994006522!GO:0010468;regulation of gene expression;0.0461658298181512!GO:0003711;transcription elongation regulator activity;0.0463098776470865!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.046312408880873!GO:0051128;regulation of cellular component organization and biogenesis;0.0470362421761285!GO:0030508;thiol-disulfide exchange intermediate activity;0.0472031322585112!GO:0009303;rRNA transcription;0.0472623810310754!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0474454787926908!GO:0007265;Ras protein signal transduction;0.0486315814762083!GO:0030145;manganese ion binding;0.0486962433179074!GO:0006818;hydrogen transport;0.0488304907384831!GO:0050811;GABA receptor binding;0.049132553887242!GO:0006611;protein export from nucleus;0.0496008233773692
|sample_id=11661
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cerebellum
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11661-122F5;search_select_hide=table117:FF:11661-122F5
}}
}}

Latest revision as of 18:13, 4 June 2020

Name:Astrocyte - cerebellum, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12117
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebellum
dev stageNA
sexNA
ageNA
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5852
catalog numberSC1815
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004940
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12117 CAGE DRX008114 DRR008986
Accession ID Hg19

Library idBAMCTSS
CNhs12117 DRZ000411 DRZ001796
Accession ID Hg38

Library idBAMCTSS
CNhs12117 DRZ011761 DRZ013146
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004940
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GTGAAA sRNA-Seq DRX037084 DRR041450
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GTGAAA DRZ007092


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-4.829898e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.199
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0804
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.211
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0112
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.363
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.214
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.118
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.116
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.409
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.264
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.475
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.353
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0312
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.256
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.211
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.648
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.118
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.504
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.294
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12117

Jaspar motifP-value
MA0002.20.197
MA0003.10.511
MA0004.10.46
MA0006.10.291
MA0007.10.794
MA0009.10.0721
MA0014.10.242
MA0017.10.541
MA0018.20.21
MA0019.10.162
MA0024.10.583
MA0025.10.983
MA0027.10.966
MA0028.12.44983e-4
MA0029.10.983
MA0030.10.287
MA0031.10.0482
MA0035.20.749
MA0038.12.29757e-5
MA0039.20.654
MA0040.10.332
MA0041.10.434
MA0042.10.898
MA0043.10.00258
MA0046.10.05
MA0047.20.12
MA0048.10.15
MA0050.11.463e-6
MA0051.14.39332e-5
MA0052.10.557
MA0055.10.265
MA0057.10.95
MA0058.10.221
MA0059.10.336
MA0060.16.06544e-7
MA0061.10.117
MA0062.22.65812e-10
MA0065.20.431
MA0066.10.752
MA0067.10.012
MA0068.10.0127
MA0069.10.479
MA0070.10.0106
MA0071.10.993
MA0072.10.914
MA0073.10.851
MA0074.10.891
MA0076.11.33538e-5
MA0077.10.0783
MA0078.10.529
MA0079.20.905
MA0080.25.35078e-10
MA0081.10.00215
MA0083.14.15917e-4
MA0084.10.976
MA0087.10.992
MA0088.10.0964
MA0090.10.0584
MA0091.10.369
MA0092.11
MA0093.10.376
MA0099.20.00548
MA0100.10.182
MA0101.10.0398
MA0102.23.73349e-4
MA0103.10.448
MA0104.20.0735
MA0105.10.0442
MA0106.10.804
MA0107.10.167
MA0108.22.07574e-8
MA0111.10.248
MA0112.20.632
MA0113.10.204
MA0114.10.583
MA0115.10.39
MA0116.10.0287
MA0117.10.22
MA0119.10.829
MA0122.10.991
MA0124.10.495
MA0125.10.301
MA0131.10.5
MA0135.10.00806
MA0136.14.04914e-14
MA0137.20.148
MA0138.20.346
MA0139.10.4
MA0140.10.959
MA0141.10.395
MA0142.10.0888
MA0143.10.0934
MA0144.10.234
MA0145.10.63
MA0146.10.404
MA0147.10.097
MA0148.10.182
MA0149.10.0483
MA0150.19.7064e-4
MA0152.10.924
MA0153.10.206
MA0154.10.294
MA0155.10.0183
MA0156.11.23304e-12
MA0157.10.116
MA0159.10.208
MA0160.10.561
MA0162.10.259
MA0163.10.0573
MA0164.10.806
MA0258.10.367
MA0259.10.242



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12117

Novel motifP-value
10.0395
100.00896
1000.825
1010.283
1020.206
1030.0791
1040.443
1050.0844
1060.508
1070.00617
1080.773
1090.53
110.924
1100.95
1110.0455
1120.218
1130.314
1140.0403
1150.427
1160.103
1170.0581
1180.166
1190.638
120.719
1200.572
1210.639
1220.927
1230.0196
1240.833
1250.398
1260.591
1270.586
1280.273
1290.637
130.347
1300.132
1310.138
1320.339
1330.994
1340.231
1350.697
1360.827
1370.0113
1380.114
1390.106
140.891
1400.9
1410.167
1420.199
1430.925
1440.681
1450.434
1460.304
1470.433
1480.0634
1490.337
150.186
1500.42
1510.914
1520.463
1530.0281
1540.485
1550.031
1560.839
1570.435
1580.115
1590.798
160.925
1600.266
1610.562
1620.149
1630.463
1640.086
1650.113
1660.459
1670.308
1680.131
1690.341
170.938
180.652
190.249
20.696
200.62
210.333
220.589
230.74
240.437
250.318
260.715
270.801
280.182
290.24
30.144
300.0719
310.27
326.37039e-5
330.837
340.184
350.584
360.117
370.248
380.635
390.548
40.574
400.714
410.439
420.155
430.357
440.76
450.454
460.962
470.311
480.835
490.327
50.215
500.74
510.885
520.489
530.367
540.861
550.564
560.704
570.916
580.137
590.162
60.56
600.998
610.195
620.213
630.912
640.319
650.311
660.781
670.631
680.00322
690.205
70.453
700.803
710.14
720.284
730.867
740.324
750.0112
760.00304
770.269
780.0728
790.106
80.56
800.524
810.868
820.865
830.805
840.56
850.768
860.332
870.477
880.43
890.127
90.506
900.0157
910.751
920.376
930.163
940.758
950.149
960.283
970.981
980.71
990.0106



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12117


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002603 (astrocyte of the cerebellum)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002037 (cerebellum)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000195 (human astrocyte of the cerebellum sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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