FF:10033-101E6: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	pons, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10640
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pons
dev stage	18-54 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101345A
catalog number	Cat:636572
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004952

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10640		CAGE		DRX008711		DRR009583

Accession ID Hg19

Library id		BAM		CTSS
CNhs10640		DRZ001008		DRZ002393

Accession ID Hg38

Library id		BAM		CTSS
CNhs10640		DRZ012358		DRZ013743

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.189
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0854
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0806
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.149
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.445
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0286
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0286
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0806
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.104
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.32
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0286
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0429
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.339
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0554
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0235
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0853
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0806
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.145
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0286
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.026
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0286
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.179
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.971
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0.0286
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0286
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.473
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0286
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.676
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00275
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0779
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.409
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0323
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.765
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.0286
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.225
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0143
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.646
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.76
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0286
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.207
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.214
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0554
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.473
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0806
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.0286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.546
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0806
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.242
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0286
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10640

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0159
MA0003.1	MA0003.1	0.337
MA0004.1	MA0004.1	0.337
MA0006.1	MA0006.1	0.441
MA0007.1	MA0007.1	0.255
MA0009.1	MA0009.1	0.201
MA0014.1	MA0014.1	0.831
MA0017.1	MA0017.1	0.00819
MA0018.2	MA0018.2	0.0493
MA0019.1	MA0019.1	0.464
MA0024.1	MA0024.1	0.854
MA0025.1	MA0025.1	0.247
MA0027.1	MA0027.1	0.506
MA0028.1	MA0028.1	0.192
MA0029.1	MA0029.1	0.161
MA0030.1	MA0030.1	0.0388
MA0031.1	MA0031.1	0.4
MA0035.2	MA0035.2	0.081
MA0038.1	MA0038.1	0.0287
MA0039.2	MA0039.2	0.516
MA0040.1	MA0040.1	0.246
MA0041.1	MA0041.1	0.157
MA0042.1	MA0042.1	0.507
MA0043.1	MA0043.1	0.327
MA0046.1	MA0046.1	0.0848
MA0047.2	MA0047.2	0.32
MA0048.1	MA0048.1	0.0621
MA0050.1	MA0050.1	0.0335
MA0051.1	MA0051.1	0.192
MA0052.1	MA0052.1	0.29
MA0055.1	MA0055.1	0.00194
MA0057.1	MA0057.1	0.874
MA0058.1	MA0058.1	0.421
MA0059.1	MA0059.1	0.0824
MA0060.1	MA0060.1	0.053
MA0061.1	MA0061.1	0.00552
MA0062.2	MA0062.2	0.0655
MA0065.2	MA0065.2	7.32435e-4
MA0066.1	MA0066.1	0.0191
MA0067.1	MA0067.1	0.482
MA0068.1	MA0068.1	0.733
MA0069.1	MA0069.1	0.556
MA0070.1	MA0070.1	0.18
MA0071.1	MA0071.1	0.0361
MA0072.1	MA0072.1	0.679
MA0073.1	MA0073.1	0.513
MA0074.1	MA0074.1	0.168
MA0076.1	MA0076.1	0.474
MA0077.1	MA0077.1	0.0888
MA0078.1	MA0078.1	0.918
MA0079.2	MA0079.2	0.342
MA0080.2	MA0080.2	8.30565e-7
MA0081.1	MA0081.1	0.117
MA0083.1	MA0083.1	0.0915
MA0084.1	MA0084.1	0.337
MA0087.1	MA0087.1	0.253
MA0088.1	MA0088.1	0.188
MA0090.1	MA0090.1	0.231
MA0091.1	MA0091.1	0.405
MA0092.1	MA0092.1	0.33
MA0093.1	MA0093.1	0.406
MA0099.2	MA0099.2	2.86734e-11
MA0100.1	MA0100.1	0.741
MA0101.1	MA0101.1	0.00533
MA0102.2	MA0102.2	0.357
MA0103.1	MA0103.1	0.159
MA0104.2	MA0104.2	0.412
MA0105.1	MA0105.1	1.1716e-4
MA0106.1	MA0106.1	0.0208
MA0107.1	MA0107.1	0.00629
MA0108.2	MA0108.2	0.494
MA0111.1	MA0111.1	0.493
MA0112.2	MA0112.2	0.00128
MA0113.1	MA0113.1	0.353
MA0114.1	MA0114.1	0.00835
MA0115.1	MA0115.1	0.714
MA0116.1	MA0116.1	0.00207
MA0117.1	MA0117.1	0.886
MA0119.1	MA0119.1	0.0509
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.629
MA0125.1	MA0125.1	0.218
MA0131.1	MA0131.1	0.954
MA0135.1	MA0135.1	0.0263
MA0136.1	MA0136.1	4.06234e-8
MA0137.2	MA0137.2	0.708
MA0138.2	MA0138.2	0.126
MA0139.1	MA0139.1	0.427
MA0140.1	MA0140.1	0.0714
MA0141.1	MA0141.1	0.0197
MA0142.1	MA0142.1	0.806
MA0143.1	MA0143.1	0.318
MA0144.1	MA0144.1	0.497
MA0145.1	MA0145.1	0.381
MA0146.1	MA0146.1	0.0215
MA0147.1	MA0147.1	0.258
MA0148.1	MA0148.1	0.3
MA0149.1	MA0149.1	0.0162
MA0150.1	MA0150.1	0.00536
MA0152.1	MA0152.1	0.967
MA0153.1	MA0153.1	0.483
MA0154.1	MA0154.1	0.028
MA0155.1	MA0155.1	0.603
MA0156.1	MA0156.1	2.64796e-4
MA0157.1	MA0157.1	0.818
MA0159.1	MA0159.1	0.00844
MA0160.1	MA0160.1	0.0829
MA0162.1	MA0162.1	0.141
MA0163.1	MA0163.1	2.39488e-7
MA0164.1	MA0164.1	0.617
MA0258.1	MA0258.1	0.0156
MA0259.1	MA0259.1	0.745

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10640

Novel motif	Logo	P-value
1	1	0.0385
10	10	0.0261
100	100	0.235
101	101	0.876
102	102	0.805
103	103	0.262
104	104	0.126
105	105	0.246
106	106	0.0292
107	107	0.0964
108	108	0.857
109	109	0.0152
11	11	0.0158
110	110	0.028
111	111	0.143
112	112	0.368
113	113	0.697
114	114	0.111
115	115	0.92
116	116	0.174
117	117	0.00803
118	118	0.12
119	119	0.156
12	12	0.745
120	120	0.12
121	121	0.986
122	122	0.579
123	123	0.627
124	124	0.022
125	125	0.237
126	126	0.0652
127	127	0.577
128	128	0.187
129	129	0.522
13	13	0.00134
130	130	0.624
131	131	0.0547
132	132	0.795
133	133	0.00546
134	134	0.261
135	135	0.0908
136	136	0.025
137	137	0.75
138	138	0.807
139	139	0.0669
14	14	0.973
140	140	0.181
141	141	0.316
142	142	0.877
143	143	0.0303
144	144	0.928
145	145	0.0595
146	146	0.663
147	147	0.783
148	148	0.155
149	149	0.253
15	15	0.0618
150	150	0.142
151	151	0.761
152	152	0.191
153	153	0.804
154	154	0.647
155	155	0.401
156	156	0.439
157	157	0.393
158	158	0.358
159	159	0.00743
16	16	0.0662
160	160	0.162
161	161	0.283
162	162	0.84
163	163	0.973
164	164	0.0083
165	165	0.221
166	166	0.853
167	167	0.357
168	168	0.667
169	169	0.0129
17	17	0.101
18	18	0.153
19	19	0.27
2	2	0.966
20	20	0.0722
21	21	0.0636
22	22	0.326
23	23	0.43
24	24	0.107
25	25	0.561
26	26	6.66356e-6
27	27	0.935
28	28	0.831
29	29	0.0122
3	3	0.045
30	30	0.63
31	31	0.909
32	32	0.0168
33	33	0.0822
34	34	0.761
35	35	0.425
36	36	0.0996
37	37	0.0583
38	38	0.379
39	39	0.222
4	4	0.96
40	40	0.0581
41	41	0.323
42	42	0.245
43	43	0.102
44	44	0.087
45	45	0.798
46	46	0.0303
47	47	0.0767
48	48	0.0605
49	49	0.156
5	5	0.645
50	50	0.353
51	51	0.464
52	52	0.667
53	53	0.963
54	54	0.503
55	55	0.344
56	56	0.541
57	57	0.233
58	58	0.361
59	59	0.102
6	6	0.798
60	60	0.0763
61	61	0.08
62	62	0.18
63	63	0.153
64	64	0.185
65	65	0.306
66	66	0.326
67	67	0.505
68	68	0.333
69	69	0.461
7	7	0.0648
70	70	0.012
71	71	0.00547
72	72	0.467
73	73	0.0775
74	74	0.734
75	75	0.0265
76	76	0.271
77	77	0.218
78	78	0.00303
79	79	0.192
8	8	0.0383
80	80	0.79
81	81	0.485
82	82	0.428
83	83	0.254
84	84	0.46
85	85	0.3
86	86	0.182
87	87	0.0128
88	88	0.831
89	89	0.388
9	9	0.494
90	90	0.0388
91	91	0.473
92	92	0.395
93	93	0.811
94	94	0.0426
95	95	0.0634
96	96	0.868
97	97	0.69
98	98	0.172
99	99	0.575

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10640

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010033 human pons - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010033 (human pons - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000988,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001895,UBERON:0002028,UBERON:0002050,UBERON:0002298,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002680,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0004121,UBERON:0004732,UBERON:0004733,UBERON:0005068,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00004952
+|accession_numbers=CAGE;DRX008711;DRR009583;DRZ001008;DRZ002393;DRZ012358;DRZ013743
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010033
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.62!418.63!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.36!229.94!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.34!217.37!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.28!191.67!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.15!287.51!C11orf9;;chr8:53322304..53322340,-!p1@ST18!1.98!93.59!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.93!84.08!OLIG2;;chr1:216896752..216896778,-!p1@ESRRG!1.92!81.50!ESRRG;;chr9:114287433..114287513,+!p1@ZNF483!1.91!202.48!ZNF483;;chr4:57547454..57547469,-!p1@HOPX!1.85!70.01!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.22!ZEB2;;chr8:40755333..40755352,-!p1@ZMAT4!1.83!67.15!ZMAT4;;chr12:26277817..26277863,-!p2@BHLHE41!1.74!72.66!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.73!52.27!NEUROD2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.52!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.62!46.56!HLF;;chr5:2751785..2751808,-!p2@IRX2!1.59!37.79!IRX2;;chr21:34442540..34442560,+!p2@OLIG1!1.57!36.09!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.55!44.25!ZNF488;;chr8:53322347..53322378,-!p2@ST18!1.54!34.05!ST18;;chr19:57352109..57352153,-!p2@ZIM2!1.51!31.61!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!30.25!NKX6-2;;chr19:13135386..13135435,+!p4@NFIX!1.49!29.84!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.57!SOX8;;chr1:151032860..151032918,+!p1@MLLT11!1.47!326.53!MLLT11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.47!28.62!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.48!RFX4;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.07!SOX2;;chr1:216896780..216896800,-!p2@ESRRG!1.46!27.73!ESRRG;;chr1:151032922..151032951,+!p2@MLLT11!1.43!42.28!MLLT11;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.76!IRX2;;chr2:60781201..60781258,-!p3@BCL11A!1.41!24.88!BCL11A;;chr6:126112039..126112062,+!p8@NCOA7!1.40!29.09!NCOA7;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.20!ZNF727;;chr3:181429741..181429767,+!p2@SOX2!1.36!22.09!SOX2;;chr12:54447637..54447659,+!p4@HOXC4!1.36!21.75!HOXC4;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.55!KDM5D;;chr19:30863271..30863338,+!p1@ZNF536!1.35!21.41!ZNF536;;chrX:85969626..85969664,+!p1@DACH2!1.35!21.34!DACH2;;chr1:214161272..214161322,+!p1@PROX1!1.34!29.02!PROX1;;chr4:81118647..81118666,+!p1@PRDM8!1.34!27.60!PRDM8;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.57!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.33!20.32!MYT1L;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.74!BHLHE41;;chr19:13135582..13135600,+!p3@NFIX!1.29!18.42!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.28!25.35!TUB;;chr10:64134120..64134183,+!p1@ZNF365!1.28!21.75!ZNF365;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.67!SOX5;;chr2:145275982..145276003,-!p7@ZEB2!1.27!17.67!ZEB2;;chr19:46801639..46801699,+!p1@HIF3A!1.26!17.06!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.24!21.61!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.23!23.86!ZNF540;;chr12:54779511..54779577,-!p5@ZNF385A!1.23!15.90!ZNF385A;;chr12:54447599..54447630,+!p3@HOXC4!1.21!18.56!HOXC4;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.29!ZIC2;;chr3:147127177..147127194,+!p2@ZIC1!1.21!15.29!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.20!14.68!IRF8;;chr12:54785074..54785122,-!p2@ZNF385A!1.17!21.21!ZNF385A;;chr1:244214577..244214593,+!p1@ZNF238!1.17!13.93!ZNF238;;chr3:147110055..147110129,-!p1@ZIC4!1.17!13.93!ZIC4;;chr9:77112244..77112262,+!p1@RORB!1.15!14.68!RORB;;chr16:51185172..51185197,-!p1@SALL1!1.15!13.19!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.15!13.19!SPI1;;chr12:106976678..106976708,+!p2@RFX4!1.15!13.05!RFX4;;chr1:165414325..165414369,-!p1@RXRG!1.15!12.98!RXRG;;chr1:217263131..217263207,-!p4@ESRRG!1.14!12.91!ESRRG;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.85!POU3F3;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.85!HOXD1;;chr9:135457981..135458003,+!p1@BARHL1!1.13!12.64!BARHL1;;chr14:33403881..33403924,+!p1@NPAS3!1.13!12.44!NPAS3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.46!NKRF;;chrX:101975643..101975683,+!p1@BHLHB9!1.11!26.17!BHLHB9;;chr17:7492684..7492778,-!p2@SOX15!1.11!25.22!SOX15;;chr16:51185318..51185348,-!p2@SALL1!1.11!11.76!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.10!71.03!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.58!BHLHE41;;chr4:57522166..57522260,-!p2@HOPX!1.10!13.25!HOPX;;chr3:147127142..147127168,+!p1@ZIC1!1.10!11.55!ZIC1;;chr6:15401104..15401166,+!p5@JARID2!1.09!11.35!JARID2;;chr11:125034640..125034655,+!p1@PKNOX2!1.08!11.08!PKNOX2;;chr20:21494654..21494678,-!p2@NKX2-2!1.08!10.94!NKX2-2;;chr2:180726040..180726052,-!p2@ZNF385B!1.08!10.94!ZNF385B;;chr21:47063625..47063658,+!p1@PCBP3!1.07!47.85!PCBP3;;chr14:73360799..73360817,-!p1@DPF3!1.07!38.00!DPF3;;chr10:111987079..111987115,+!p3@MXI1!1.07!14.68!MXI1;;chr1:40105299..40105326,-!p1@HEYL!1.06!10.60!HEYL;;chr14:58798013..58798071,+!p2@ARID4A!1.06!10.54!ARID4A;;chr12:54447686..54447704,+!p5@HOXC4!1.06!10.40!HOXC4;;chr21:39870339..39870443,-!p1@ERG!1.05!10.26!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.41!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.04!11.96!NPAS3;;chr12:52437488..52437507,+!p2@NR4A1!1.03!9.65!NR4A1;;chr7:73038839..73038862,-!p1@MLXIPL!1.03!9.65!MLXIPL;;chr6:126112074..126112144,+!p1@NCOA7!1.02!129.89!NCOA7;;chr19:53636125..53636178,-!p1@ZNF415!1.02!27.66!ZNF415;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.78!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.02!11.49!ZBTB38;;chr22:41763452..41763466,+!p2@TEF!1.02!9.58!TEF;;chr13:100634004..100634025,+!p2@ZIC2!1.02!9.52!ZIC2;;chr8:145560111..145560165,-!p2@SCRT1!1.02!9.52!SCRT1;;chr2:95963052..95963106,+!p1@KCNIP3!1.02!9.45!KCNIP3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.45!NKRF;;chr2:145277640..145277771,-!p1@ZEB2!1.01!126.90!ZEB2;;chr7:28725740..28725778,+!p1@CREB5!1.01!85.03!CREB5;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.30!SOX18;;chr8:145560371..145560449,-!p1@SCRT1!1.01!9.31!SCRT1;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.31!PLEK;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.24!IRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.00!24.13!ZFPM2;;chr1:61548069..61548102,+!p3@NFIA!1.00!21.95!NFIA;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.49!ZFPM2;;chr13:72441315..72441454,-!p1@DACH1!0.99!17.88!DACH1;;chr3:52001396..52001425,-!p4@PCBP4!0.99!15.77!PCBP4;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.70!ZNF366;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.86!HEY2;;chr2:95963120..95963136,+!p2@KCNIP3!0.97!8.43!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.36!RBPJ;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.29!TCF4;;chr17:46132044..46132080,+!p4@NFE2L1!0.96!8.16!NFE2L1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.96!8.16!ZSCAN1;;chr1:216896801..216896812,-!p5@ESRRG!0.96!8.09!ESRRG;;chr7:27170359..27170381,-!p1@HOXA4!0.96!8.02!HOXA4;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.96!NFIX;;chr11:8102819..8102845,+!p3@TUB!0.95!9.99!TUB;;chr19:21512202..21512225,-!p1@ZNF708!0.94!41.26!ZNF708;;chr1:151032782..151032801,+!p4@MLLT11!0.94!15.70!MLLT11;;chr12:125003087..125003141,-!p4@NCOR2!0.94!10.06!NCOR2;;chr19:22193731..22193751,-!p1@ZNF208!0.94!7.61!ZNF208;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.83!MEF2C;;chr18:22932080..22932170,-!p1@ZNF521!0.92!32.15!ZNF521;;chr2:178128250..178128293,-!p6@NFE2L2!0.92!19.10!NFE2L2;;chr3:126076242..126076257,-!p1@KLF15!0.92!9.18!KLF15;;chr2:2328725..2328739,-!p5@MYT1L!0.92!7.27!MYT1L;;chr17:53344980..53345011,+!p3@HLF!0.92!7.27!HLF;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.14!OLIG1;;chr2:74229812..74229867,+!p1@TET3!0.90!17.94!TET3;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.71!ZNF454;;chr2:180726058..180726098,-!p3@ZNF385B!0.90!7.00!ZNF385B;;chr12:103351444..103351461,+!p1@ASCL1!0.90!7.00!ASCL1;;chr2:145275947..145275981,-!p10@ZEB2!0.90!6.93!ZEB2;;chr19:21512144..21512191,-!p2@ZNF708!0.89!33.31!ZNF708;;chr12:54785054..54785072,-!p4@ZNF385A!0.89!7.82!ZNF385A;;chr10:38265517..38265591,-!p1@ZNF25!0.88!27.05!ZNF25;;chr6:143266185..143266238,-!p2@HIVEP2!0.88!9.38!HIVEP2;;chr11:125034605..125034636,+!p2@PKNOX2!0.88!6.66!PKNOX2;;chr11:31832658..31832681,-!p1@PAX6!0.88!6.66!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.88!6.59!BHLHE41;;chr14:58797974..58798011,+!p3@ARID4A!0.88!6.59!ARID4A;;chr7:150974206..150974255,-!p1@SMARCD3!0.87!42.55!SMARCD3;;chr19:13135731..13135787,+!p10@NFIX!0.87!6.46!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!0.87!6.39!ZNF385B;;chr4:26344778..26344807,+!p8@RBPJ!0.87!6.39!RBPJ;;chr2:214016314..214016343,-!p2@IKZF2!0.85!10.67!IKZF2;;chr15:57511609..57511651,+!p2@TCF12!0.85!10.60!TCF12;;chr6:1312325..1312340,+!p1@FOXQ1!0.85!10.33!FOXQ1;;chr1:151032739..151032748,+!p6@MLLT11!0.85!7.75!MLLT11;;chr9:135457530..135457541,+!p2@BARHL1!0.85!6.12!BARHL1;;chr17:46131916..46131952,+!p7@NFE2L1!0.85!6.05!NFE2L1;;chr17:4890919..4890985,-!p1@CAMTA2!0.84!59.81!CAMTA2;;chr7:28448965..28448994,+!p2@CREB5!0.84!22.23!CREB5;;chrX:106959661..106959763,-!p4@TSC22D3!0.84!18.22!TSC22D3;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.34!ZBTB20;;chr19:21512115..21512135,-!p3@ZNF708!0.84!12.57!ZNF708;;chr5:3595934..3595957,+!p2@IRX1!0.84!5.98!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.85!SOX7;;chr13:100634130..100634143,+!p3@ZIC2!0.84!5.85!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.83!63.96!SOX9;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.62!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.83!14.41!TCF4;;chr2:176033027..176033050,-!p3@ATF2!0.83!8.22!ATF2;;chr8:55370487..55370503,+!p1@SOX17!0.83!5.78!SOX17;;chr14:33403648..33403710,+!p3@NPAS3!0.83!5.78!NPAS3;;chr2:180726331..180726344,-!p5@ZNF385B!0.83!5.71!ZNF385B;;chr2:2330039..2330072,-!p6@MYT1L!0.83!5.71!MYT1L;;chr1:217251619..217251658,-!p6@ESRRG!0.83!5.71!ESRRG;;chr2:2335109..2335134,-!p2@MYT1L!0.82!5.64!MYT1L;;chr10:48359344..48359376,+!p2@ZNF488!0.82!5.64!ZNF488;;chr1:61547894..61547968,+!p2@NFIA!0.81!17.06!NFIA;;chr1:151032833..151032850,+!p3@MLLT11!0.81!13.05!MLLT11;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.81!12.17!ZNF395;;chr20:45142154..45142227,-!p1@ZNF334!0.81!11.28!ZNF334;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.19!ZNF835;;chrX:101186981..101187030,-!p1@ZMAT1!0.80!18.62!ZMAT1;;chr18:529890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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10033-101E6
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010033
+|is_a=EFO:0002091;;FF:0010033
+|is_obsolete=
+|library_id=CNhs10640
+|library_id_phase_based=2:CNhs10640
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10033
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10033
 |name=pons, adult, pool1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10640,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=101
 |rna_catalog_number=Cat:636572
@@ Line 54: / Line 76: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=101E6
+|rna_tube_id=1.01E+08
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=C
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.48115587673178e-278!GO:0005737;cytoplasm;4.15293750909862e-164!GO:0044444;cytoplasmic part;7.22086561841134e-111!GO:0043226;organelle;2.03104087709141e-98!GO:0043229;intracellular organelle;4.44116821030808e-98!GO:0043227;membrane-bound organelle;5.67860787381024e-91!GO:0043231;intracellular membrane-bound organelle;5.70715524607306e-91!GO:0044422;organelle part;1.19226805427395e-64!GO:0044446;intracellular organelle part;8.32289228094708e-64!GO:0005515;protein binding;6.98385958253595e-59!GO:0032991;macromolecular complex;5.78894741896853e-54!GO:0016043;cellular component organization and biogenesis;6.25816075786942e-45!GO:0005739;mitochondrion;2.24738788586989e-43!GO:0033036;macromolecule localization;1.24179626470515e-42!GO:0015031;protein transport;3.82188998999018e-41!GO:0031090;organelle membrane;3.47159978561069e-40!GO:0008104;protein localization;3.05748197732656e-39!GO:0045184;establishment of protein localization;2.09935243610119e-38!GO:0003723;RNA binding;1.09586214661782e-37!GO:0030529;ribonucleoprotein complex;5.83475630645746e-36!GO:0046907;intracellular transport;1.21437658262106e-31!GO:0044429;mitochondrial part;1.88703717923512e-31!GO:0043234;protein complex;2.35967881095709e-30!GO:0051649;establishment of cellular localization;2.24948320161721e-29!GO:0016192;vesicle-mediated transport;3.19976743268594e-29!GO:0051641;cellular localization;3.19976743268594e-29!GO:0043233;organelle lumen;5.27729954524197e-29!GO:0031974;membrane-enclosed lumen;5.27729954524197e-29!GO:0031975;envelope;1.15990734903234e-27!GO:0031967;organelle envelope;1.60607159415829e-27!GO:0044428;nuclear part;4.59450707728666e-27!GO:0044238;primary metabolic process;5.74705988756556e-26!GO:0019538;protein metabolic process;3.18886797126721e-25!GO:0005829;cytosol;4.99007672050301e-24!GO:0044237;cellular metabolic process;5.95076855566638e-24!GO:0016071;mRNA metabolic process;1.14137173024509e-23!GO:0006886;intracellular protein transport;2.81857672751576e-23!GO:0006396;RNA processing;6.86916523321546e-22!GO:0005740;mitochondrial envelope;1.04544229132441e-21!GO:0044260;cellular macromolecule metabolic process;1.22701964098171e-21!GO:0043170;macromolecule metabolic process;1.59689769050177e-21!GO:0031966;mitochondrial membrane;3.0854830054721e-21!GO:0006119;oxidative phosphorylation;3.46759791742934e-21!GO:0005794;Golgi apparatus;3.46759791742934e-21!GO:0008380;RNA splicing;7.89783277832014e-21!GO:0044267;cellular protein metabolic process;8.28066183662001e-21!GO:0031982;vesicle;1.2640807534005e-19!GO:0006397;mRNA processing;1.54660313059812e-19!GO:0009058;biosynthetic process;1.89399971198731e-19!GO:0006996;organelle organization and biogenesis;3.26662138119559e-19!GO:0031410;cytoplasmic vesicle;4.6449632079571e-19!GO:0019866;organelle inner membrane;7.71784885289655e-19!GO:0005840;ribosome;8.37579693735066e-19!GO:0005743;mitochondrial inner membrane;1.96734033921307e-18!GO:0031988;membrane-bound vesicle;2.32385536855843e-18!GO:0016023;cytoplasmic membrane-bound vesicle;6.56686221821123e-18!GO:0000166;nucleotide binding;1.05316048304106e-17!GO:0005634;nucleus;1.5737358198801e-17!GO:0065003;macromolecular complex assembly;2.27785620668108e-17!GO:0006412;translation;2.41194015748668e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6356634644222e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.69229048074867e-17!GO:0016462;pyrophosphatase activity;3.8276227481042e-17!GO:0017111;nucleoside-triphosphatase activity;3.2570607396995e-16!GO:0012505;endomembrane system;4.24107262089655e-16!GO:0031981;nuclear lumen;1.94842771696321e-15!GO:0022607;cellular component assembly;1.98124404307705e-15!GO:0044455;mitochondrial membrane part;9.85990462447479e-15!GO:0003735;structural constituent of ribosome;1.45274760638683e-14!GO:0006512;ubiquitin cycle;1.52294628097329e-14!GO:0005746;mitochondrial respiratory chain;2.12431067796e-14!GO:0009059;macromolecule biosynthetic process;2.29669626272432e-14!GO:0044249;cellular biosynthetic process;2.3912171418872e-14!GO:0016874;ligase activity;4.07959963277737e-14!GO:0048770;pigment granule;5.31184201140629e-14!GO:0042470;melanosome;5.31184201140629e-14!GO:0006457;protein folding;6.93476343068001e-14!GO:0005681;spliceosome;7.42271293575237e-14!GO:0032553;ribonucleotide binding;1.34356989858935e-13!GO:0032555;purine ribonucleotide binding;1.34356989858935e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.75785013068474e-13!GO:0003954;NADH dehydrogenase activity;1.75785013068474e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.75785013068474e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.4120198607373e-13!GO:0048193;Golgi vesicle transport;5.78341162453458e-13!GO:0017076;purine nucleotide binding;7.33307327320573e-13!GO:0045045;secretory pathway;1.24553292771182e-12!GO:0033279;ribosomal subunit;2.6187870390507e-12!GO:0031980;mitochondrial lumen;3.17400420303776e-12!GO:0005759;mitochondrial matrix;3.17400420303776e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.7738530549734e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0042773;ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.19769891915129e-11!GO:0045271;respiratory chain complex I;1.19769891915129e-11!GO:0005747;mitochondrial respiratory chain complex I;1.19769891915129e-11!GO:0007264;small GTPase mediated signal transduction;1.51036734190983e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54681601497647e-11!GO:0043412;biopolymer modification;2.20151008911791e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.46339789760733e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.71999416155112e-11!GO:0019941;modification-dependent protein catabolic process;2.91407135609971e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.91407135609971e-11!GO:0044257;cellular protein catabolic process;3.35407690412078e-11!GO:0006810;transport;4.96374794438681e-11!GO:0008092;cytoskeletal protein binding;5.86609323469554e-11!GO:0022618;protein-RNA complex assembly;6.9350681559729e-11!GO:0003924;GTPase activity;7.29130068785446e-11!GO:0005783;endoplasmic reticulum;9.00688623558466e-11!GO:0006464;protein modification process;9.33999004738684e-11!GO:0043283;biopolymer metabolic process;9.71919456936922e-11!GO:0008135;translation factor activity, nucleic acid binding;1.09679557020242e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.11870414503048e-10!GO:0051082;unfolded protein binding;1.15783294351262e-10!GO:0030695;GTPase regulator activity;1.47911896903463e-10!GO:0005768;endosome;1.57772171446979e-10!GO:0044265;cellular macromolecule catabolic process;1.66142682015201e-10!GO:0019829;cation-transporting ATPase activity;2.34001770804413e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.6326698853357e-10!GO:0044431;Golgi apparatus part;2.77772902454179e-10!GO:0008565;protein transporter activity;4.19945966066486e-10!GO:0007010;cytoskeleton organization and biogenesis;5.0644909034474e-10!GO:0043687;post-translational protein modification;5.94191624129919e-10!GO:0006605;protein targeting;6.86187994974297e-10!GO:0030135;coated vesicle;7.89438702582312e-10!GO:0005654;nucleoplasm;8.37857255964935e-10!GO:0016044;membrane organization and biogenesis;8.90886797550166e-10!GO:0005525;GTP binding;1.01083004739847e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.2747150748673e-09!GO:0043228;non-membrane-bound organelle;1.72492925982888e-09!GO:0043232;intracellular non-membrane-bound organelle;1.72492925982888e-09!GO:0005083;small GTPase regulator activity;1.76188655232935e-09!GO:0032940;secretion by cell;2.63851661510089e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.51448195315998e-09!GO:0044248;cellular catabolic process;4.33682253458457e-09!GO:0051186;cofactor metabolic process;4.77387562720428e-09!GO:0044445;cytosolic part;5.12751752339886e-09!GO:0051179;localization;5.31640738136695e-09!GO:0006461;protein complex assembly;6.0425264406219e-09!GO:0051234;establishment of localization;8.99725783709633e-09!GO:0015986;ATP synthesis coupled proton transport;1.17074780211239e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17074780211239e-08!GO:0044451;nucleoplasm part;1.22473788882582e-08!GO:0043285;biopolymer catabolic process;1.60933641362657e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.99898736789621e-08!GO:0030163;protein catabolic process;2.3744677513674e-08!GO:0032561;guanyl ribonucleotide binding;2.61935528722729e-08!GO:0019001;guanyl nucleotide binding;2.61935528722729e-08!GO:0019787;small conjugating protein ligase activity;4.2813328768515e-08!GO:0008639;small protein conjugating enzyme activity;5.05676487373099e-08!GO:0015631;tubulin binding;7.8071936873285e-08!GO:0009060;aerobic respiration;8.08758993989251e-08!GO:0003743;translation initiation factor activity;8.66719816809962e-08!GO:0000139;Golgi membrane;9.03264855354963e-08!GO:0004842;ubiquitin-protein ligase activity;9.10189069807336e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.56382452553483e-08!GO:0032559;adenyl ribonucleotide binding;1.00973797362761e-07!GO:0046034;ATP metabolic process;1.40828998929745e-07!GO:0006793;phosphorus metabolic process;1.47411069388745e-07!GO:0006796;phosphate metabolic process;1.47411069388745e-07!GO:0008134;transcription factor binding;1.49557862070655e-07!GO:0010467;gene expression;1.5115217792706e-07!GO:0045333;cellular respiration;1.52770790502988e-07!GO:0009057;macromolecule catabolic process;1.53084466453835e-07!GO:0006413;translational initiation;1.72864853855516e-07!GO:0015935;small ribosomal subunit;1.72864853855516e-07!GO:0048471;perinuclear region of cytoplasm;2.065899409219e-07!GO:0030029;actin filament-based process;2.14098968222148e-07!GO:0006163;purine nucleotide metabolic process;2.23073282364634e-07!GO:0006446;regulation of translational initiation;2.37806340597886e-07!GO:0015630;microtubule cytoskeleton;2.45470410884237e-07!GO:0005524;ATP binding;2.48884631253623e-07!GO:0016881;acid-amino acid ligase activity;2.99694760814933e-07!GO:0016604;nuclear body;3.09572640143048e-07!GO:0048475;coated membrane;3.12245632110706e-07!GO:0030117;membrane coat;3.12245632110706e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.2238622414777e-07!GO:0009150;purine ribonucleotide metabolic process;3.25568359578402e-07!GO:0044440;endosomal part;3.47838238679582e-07!GO:0010008;endosome membrane;3.47838238679582e-07!GO:0016607;nuclear speck;3.98893666614126e-07!GO:0030554;adenyl nucleotide binding;4.17585084179997e-07!GO:0005761;mitochondrial ribosome;4.36436228131872e-07!GO:0000313;organellar ribosome;4.36436228131872e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.84490413326172e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.84490413326172e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.17908033558036e-07!GO:0006754;ATP biosynthetic process;5.65659392243874e-07!GO:0006753;nucleoside phosphate metabolic process;5.65659392243874e-07!GO:0009141;nucleoside triphosphate metabolic process;6.00342680970959e-07!GO:0005635;nuclear envelope;6.31296737150709e-07!GO:0006164;purine nucleotide biosynthetic process;6.3291221014417e-07!GO:0006732;coenzyme metabolic process;6.67733066465035e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.61925930115935e-07!GO:0019899;enzyme binding;8.83574812582724e-07!GO:0031965;nuclear membrane;8.92019667785043e-07!GO:0009152;purine ribonucleotide biosynthetic process;9.02889374065705e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.4908939917402e-07!GO:0009259;ribonucleotide metabolic process;1.01782001407757e-06!GO:0016887;ATPase activity;1.06003542081595e-06!GO:0006897;endocytosis;1.17096582495481e-06!GO:0010324;membrane invagination;1.17096582495481e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.3783494631829e-06!GO:0000375;RNA splicing, via transesterification reactions;1.3783494631829e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.3783494631829e-06!GO:0031252;leading edge;1.52521965001375e-06!GO:0030136;clathrin-coated vesicle;1.53400986301177e-06!GO:0006099;tricarboxylic acid cycle;1.65900577343541e-06!GO:0046356;acetyl-CoA catabolic process;1.65900577343541e-06!GO:0042623;ATPase activity, coupled;1.74439147169706e-06!GO:0044432;endoplasmic reticulum part;2.24662863697624e-06!GO:0005905;coated pit;3.05034540590881e-06!GO:0003779;actin binding;3.06531707395459e-06!GO:0006913;nucleocytoplasmic transport;3.28648204857707e-06!GO:0005770;late endosome;3.84809140535128e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0043005;neuron projection;4.96813275576652e-06!GO:0051169;nuclear transport;5.23677350601305e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009260;ribonucleotide biosynthetic process;5.51495177405579e-06!GO:0009055;electron carrier activity;5.51495177405579e-06!GO:0007265;Ras protein signal transduction;5.81019044142574e-06!GO:0008287;protein serine/threonine phosphatase complex;6.0942340206282e-06!GO:0009109;coenzyme catabolic process;6.31806207524718e-06!GO:0006084;acetyl-CoA metabolic process;6.85338971296142e-06!GO:0005769;early endosome;7.26315260157186e-06!GO:0005874;microtubule;8.44140187405118e-06!GO:0045259;proton-transporting ATP synthase complex;8.62558282957014e-06!GO:0019717;synaptosome;1.05827168266724e-05!GO:0005730;nucleolus;1.33297466805545e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52148607433074e-05!GO:0016310;phosphorylation;1.55776355995419e-05!GO:0015934;large ribosomal subunit;1.57756530680154e-05!GO:0005773;vacuole;1.6666143374778e-05!GO:0008047;enzyme activator activity;1.69423360082313e-05!GO:0051187;cofactor catabolic process;2.06343883751001e-05!GO:0005789;endoplasmic reticulum membrane;2.08676348872266e-05!GO:0008654;phospholipid biosynthetic process;2.18390805277644e-05!GO:0005096;GTPase activator activity;2.26793452821724e-05!GO:0007399;nervous system development;2.4503458412735e-05!GO:0005798;Golgi-associated vesicle;3.13086927012255e-05!GO:0008017;microtubule binding;3.22177282102618e-05!GO:0046467;membrane lipid biosynthetic process;3.5015834308197e-05!GO:0030120;vesicle coat;3.811407477769e-05!GO:0030662;coated vesicle membrane;3.811407477769e-05!GO:0007242;intracellular signaling cascade;4.14296948043198e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.16058820547248e-05!GO:0015399;primary active transmembrane transporter activity;4.16058820547248e-05!GO:0022890;inorganic cation transmembrane transporter activity;4.38371752488521e-05!GO:0017038;protein import;4.94250071859733e-05!GO:0051246;regulation of protein metabolic process;4.94250071859733e-05!GO:0009056;catabolic process;5.02326989250248e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.00865054362121e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.20270398690106e-05!GO:0048523;negative regulation of cellular process;6.58016162650356e-05!GO:0006613;cotranslational protein targeting to membrane;6.80780386444327e-05!GO:0005793;ER-Golgi intermediate compartment;6.99480766032266e-05!GO:0051056;regulation of small GTPase mediated signal transduction;7.65971749394463e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.91454392072998e-05!GO:0016126;sterol biosynthetic process;9.17947261816366e-05!GO:0030133;transport vesicle;0.000102594606138997!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000105964459822664!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000127436061687798!GO:0006650;glycerophospholipid metabolic process;0.000139357284480746!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000149299602371209!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000156494743311525!GO:0016197;endosome transport;0.000158005906022067!GO:0044453;nuclear membrane part;0.000163649647878631!GO:0000323;lytic vacuole;0.000183585295480271!GO:0005764;lysosome;0.000183585295480271!GO:0006643;membrane lipid metabolic process;0.000184816721847721!GO:0051188;cofactor biosynthetic process;0.000193389149622185!GO:0006752;group transfer coenzyme metabolic process;0.000197632436837562!GO:0006403;RNA localization;0.000200104346872852!GO:0050657;nucleic acid transport;0.000219328121823146!GO:0051236;establishment of RNA localization;0.000219328121823146!GO:0050658;RNA transport;0.000219328121823146!GO:0030118;clathrin coat;0.000223714691482422!GO:0008610;lipid biosynthetic process;0.00024150443251601!GO:0031072;heat shock protein binding;0.00024584402482882!GO:0005643;nuclear pore;0.00025442277990242!GO:0032446;protein modification by small protein conjugation;0.000273071501063321!GO:0015980;energy derivation by oxidation of organic compounds;0.000295127981594733!GO:0048489;synaptic vesicle transport;0.000325320356335384!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000339513630407335!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000346503361754485!GO:0006892;post-Golgi vesicle-mediated transport;0.000360141655682436!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000391568021259714!GO:0030027;lamellipodium;0.000405562592388523!GO:0000245;spliceosome assembly;0.000441723697063117!GO:0030425;dendrite;0.000446590638655483!GO:0016567;protein ubiquitination;0.000497758755774234!GO:0005938;cell cortex;0.00050073514146202!GO:0003712;transcription cofactor activity;0.000505960726529239!GO:0000151;ubiquitin ligase complex;0.000508458196161273!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000509896947472319!GO:0004812;aminoacyl-tRNA ligase activity;0.000509896947472319!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000509896947472319!GO:0005085;guanyl-nucleotide exchange factor activity;0.000539743337634539!GO:0005741;mitochondrial outer membrane;0.000557570890422481!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000614824439395003!GO:0008021;synaptic vesicle;0.000639988646077753!GO:0043038;amino acid activation;0.000653344313632813!GO:0006418;tRNA aminoacylation for protein translation;0.000653344313632813!GO:0043039;tRNA aminoacylation;0.000653344313632813!GO:0008026;ATP-dependent helicase activity;0.000670889235625801!GO:0048519;negative regulation of biological process;0.000670889235625801!GO:0003729;mRNA binding;0.000687689291471707!GO:0019867;outer membrane;0.000689167804106284!GO:0031968;organelle outer membrane;0.000695603572387914!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000696781815532224!GO:0051087;chaperone binding;0.000713045253384984!GO:0000159;protein phosphatase type 2A complex;0.000800532191935073!GO:0008601;protein phosphatase type 2A regulator activity;0.000823441976751049!GO:0030384;phosphoinositide metabolic process;0.000856239639225312!GO:0031901;early endosome membrane;0.000856632109808351!GO:0000902;cell morphogenesis;0.000863587576565257!GO:0032989;cellular structure morphogenesis;0.000863587576565257!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000874293037852234!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000882776360649043!GO:0004386;helicase activity;0.000924176337998281!GO:0022406;membrane docking;0.000948811347418852!GO:0048278;vesicle docking;0.000948811347418852!GO:0045786;negative regulation of progression through cell cycle;0.000950800537362595!GO:0008154;actin polymerization and/or depolymerization;0.00103899629249576!GO:0046578;regulation of Ras protein signal transduction;0.00109773743710137!GO:0016050;vesicle organization and biogenesis;0.0011458048612655!GO:0007019;microtubule depolymerization;0.00118694067064996!GO:0006904;vesicle docking during exocytosis;0.00119032151751924!GO:0006612;protein targeting to membrane;0.00121404553613773!GO:0009108;coenzyme biosynthetic process;0.00123714272762158!GO:0006695;cholesterol biosynthetic process;0.00123714272762158!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00133906173985956!GO:0030427;site of polarized growth;0.00142002339605146!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00143132999615185!GO:0030426;growth cone;0.00143774322097215!GO:0043566;structure-specific DNA binding;0.00151358420795954!GO:0003724;RNA helicase activity;0.00160545401923599!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00163925641379624!GO:0016568;chromatin modification;0.00174069828684081!GO:0005839;proteasome core complex (sensu Eukaryota);0.00176718976443791!GO:0006607;NLS-bearing substrate import into nucleus;0.00177545007127835!GO:0043623;cellular protein complex assembly;0.00178669580396323!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00196437154603214!GO:0006606;protein import into nucleus;0.00197065834975711!GO:0051170;nuclear import;0.00199653579698266!GO:0009966;regulation of signal transduction;0.00201211116119631!GO:0043069;negative regulation of programmed cell death;0.00202244625797233!GO:0019902;phosphatase binding;0.00208064624554871!GO:0031902;late endosome membrane;0.00208064624554871!GO:0009117;nucleotide metabolic process;0.00210295352823095!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00210499610182159!GO:0043209;myelin sheath;0.00210499610182159!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021780055318962!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021780055318962!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021780055318962!GO:0012501;programmed cell death;0.00230174215351466!GO:0016791;phosphoric monoester hydrolase activity;0.00233609682255336!GO:0006915;apoptosis;0.00239767350342047!GO:0043066;negative regulation of apoptosis;0.00239999143661743!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0024308947157536!GO:0048487;beta-tubulin binding;0.00251701361517966!GO:0051261;protein depolymerization;0.0025517027959466!GO:0005875;microtubule associated complex;0.0025612318706977!GO:0019208;phosphatase regulator activity;0.00256368437361251!GO:0051028;mRNA transport;0.00258638916289587!GO:0046474;glycerophospholipid biosynthetic process;0.00259839751527591!GO:0008219;cell death;0.00281397044979556!GO:0016265;death;0.00281397044979556!GO:0001726;ruffle;0.00284522652725509!GO:0044448;cell cortex part;0.00293514901347347!GO:0006891;intra-Golgi vesicle-mediated transport;0.00303751400145895!GO:0005813;centrosome;0.00308260700856973!GO:0004721;phosphoprotein phosphatase activity;0.0032455744469955!GO:0005869;dynactin complex;0.00349057818212679!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00368685678518518!GO:0007272;ensheathment of neurons;0.00374942244001046!GO:0008366;axon ensheathment;0.00374942244001046!GO:0006916;anti-apoptosis;0.00374942244001046!GO:0031114;regulation of microtubule depolymerization;0.00375940358409061!GO:0007026;negative regulation of microtubule depolymerization;0.00375940358409061!GO:0005791;rough endoplasmic reticulum;0.00383788964918936!GO:0016311;dephosphorylation;0.00412001422236819!GO:0005774;vacuolar membrane;0.00416053362402258!GO:0046488;phosphatidylinositol metabolic process;0.00416053362402258!GO:0001508;regulation of action potential;0.00422338022880763!GO:0043087;regulation of GTPase activity;0.00424386433487145!GO:0005099;Ras GTPase activator activity;0.00424386433487145!GO:0048500;signal recognition particle;0.00430286829013567!GO:0007266;Rho protein signal transduction;0.00436441386648246!GO:0007017;microtubule-based process;0.00445454790471166!GO:0051427;hormone receptor binding;0.00449695662911894!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00452163627259569!GO:0003697;single-stranded DNA binding;0.00455569294754527!GO:0006665;sphingolipid metabolic process;0.00462490997637808!GO:0043021;ribonucleoprotein binding;0.00462885133397296!GO:0006644;phospholipid metabolic process;0.00484697012377753!GO:0030258;lipid modification;0.00497302957603207!GO:0065002;intracellular protein transport across a membrane;0.00498100127775074!GO:0030867;rough endoplasmic reticulum membrane;0.0049914568292125!GO:0050811;GABA receptor binding;0.00507211405095878!GO:0016564;transcription repressor activity;0.00524804177866877!GO:0051920;peroxiredoxin activity;0.00527368228582926!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0004667;prostaglandin-D synthase activity;0.00536462051671617!GO:0050802;circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0022410;circadian sleep/wake cycle process;0.00536462051671617!GO:0042749;regulation of circadian sleep/wake cycle;0.00536462051671617!GO:0050767;regulation of neurogenesis;0.00549382586991492!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00611318379495179!GO:0005815;microtubule organizing center;0.00611318379495179!GO:0006414;translational elongation;0.00662426754762513!GO:0004298;threonine endopeptidase activity;0.00678832372611287!GO:0006259;DNA metabolic process;0.00678832372611287!GO:0051287;NAD binding;0.00752973050793286!GO:0012506;vesicle membrane;0.00771527442818673!GO:0030742;GTP-dependent protein binding;0.00774068259449085!GO:0004722;protein serine/threonine phosphatase activity;0.00785084381411088!GO:0019888;protein phosphatase regulator activity;0.00789209065187492!GO:0035257;nuclear hormone receptor binding;0.00789702430306608!GO:0003714;transcription corepressor activity;0.00789702430306608!GO:0008180;signalosome;0.00799014857247449!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00809312576412147!GO:0000314;organellar small ribosomal subunit;0.00827290650104205!GO:0005763;mitochondrial small ribosomal subunit;0.00827290650104205!GO:0051168;nuclear export;0.00873685487002796!GO:0006470;protein amino acid dephosphorylation;0.00895779829748984!GO:0003746;translation elongation factor activity;0.009168680274428!GO:0046489;phosphoinositide biosynthetic process;0.00917294475804751!GO:0051540;metal cluster binding;0.0092301761026649!GO:0051536;iron-sulfur cluster binding;0.0092301761026649!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0092301761026649!GO:0016740;transferase activity;0.00931457176993322!GO:0019887;protein kinase regulator activity;0.00945720020144344!GO:0030132;clathrin coat of coated pit;0.00961183147003998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00985662494360342!GO:0045047;protein targeting to ER;0.00985662494360342!GO:0035035;histone acetyltransferase binding;0.0101120058096382!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0104163568287712!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0104382236315044!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0104382236315044!GO:0015629;actin cytoskeleton;0.0104382236315044!GO:0006323;DNA packaging;0.0110344236126211!GO:0016301;kinase activity;0.011409395769311!GO:0030137;COPI-coated vesicle;0.0114648791156611!GO:0044433;cytoplasmic vesicle part;0.0115220582687841!GO:0006672;ceramide metabolic process;0.0117471069243262!GO:0030658;transport vesicle membrane;0.011789107876547!GO:0006402;mRNA catabolic process;0.0118577780165188!GO:0005048;signal sequence binding;0.0119602741411348!GO:0046519;sphingoid metabolic process;0.0119602741411348!GO:0005765;lysosomal membrane;0.0122124300056975!GO:0008186;RNA-dependent ATPase activity;0.0124286398995778!GO:0007049;cell cycle;0.0124343186970197!GO:0006399;tRNA metabolic process;0.0126514266060624!GO:0008361;regulation of cell size;0.0128537117963468!GO:0030041;actin filament polymerization;0.0133288167391454!GO:0007034;vacuolar transport;0.0133898381054642!GO:0030660;Golgi-associated vesicle membrane;0.0135010642088916!GO:0045055;regulated secretory pathway;0.0136332646470776!GO:0016070;RNA metabolic process;0.0136332646470776!GO:0044255;cellular lipid metabolic process;0.0139406577763061!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055083;monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055064;chloride ion homeostasis;0.0140795595936804!GO:0030644;cellular chloride ion homeostasis;0.0140795595936804!GO:0046930;pore complex;0.0142333286557509!GO:0031124;mRNA 3'-end processing;0.0143674598462512!GO:0006661;phosphatidylinositol biosynthetic process;0.0150327843382377!GO:0042254;ribosome biogenesis and assembly;0.0151096667608397!GO:0033673;negative regulation of kinase activity;0.0151740485010992!GO:0006469;negative regulation of protein kinase activity;0.0151740485010992!GO:0001505;regulation of neurotransmitter levels;0.0153940520931232!GO:0044437;vacuolar part;0.0154981299886616!GO:0035258;steroid hormone receptor binding;0.0158688322725815!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0159232769232513!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159232769232513!GO:0033043;regulation of organelle organization and biogenesis;0.0159232769232513!GO:0016408;C-acyltransferase activity;0.0159564664762431!GO:0030119;AP-type membrane coat adaptor complex;0.0166548071976076!GO:0016363;nuclear matrix;0.0168856935403546!GO:0000287;magnesium ion binding;0.0170712737225849!GO:0030532;small nuclear ribonucleoprotein complex;0.0176175674044129!GO:0006818;hydrogen transport;0.0176705991994178!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0178868795872213!GO:0000059;protein import into nucleus, docking;0.0178868795872213!GO:0009165;nucleotide biosynthetic process;0.0179235014685155!GO:0005100;Rho GTPase activator activity;0.0184004326633893!GO:0048167;regulation of synaptic plasticity;0.0184494695071031!GO:0008312;7S RNA binding;0.0187559100267538!GO:0030424;axon;0.0187841453970721!GO:0046839;phospholipid dephosphorylation;0.0188467380389491!GO:0005885;Arp2/3 protein complex;0.019115650463817!GO:0043681;protein import into mitochondrion;0.0192577601960679!GO:0008250;oligosaccharyl transferase complex;0.0194637935587752!GO:0032011;ARF protein signal transduction;0.0194668940578174!GO:0032012;regulation of ARF protein signal transduction;0.0194668940578174!GO:0019903;protein phosphatase binding;0.0198242822967505!GO:0009892;negative regulation of metabolic process;0.0201068883665867!GO:0031109;microtubule polymerization or depolymerization;0.0202080681497832!GO:0008090;retrograde axon cargo transport;0.02043378713715!GO:0033596;TSC1-TSC2 complex;0.02043378713715!GO:0033693;neurofilament bundle assembly;0.02043378713715!GO:0007269;neurotransmitter secretion;0.0208670637721512!GO:0005868;cytoplasmic dynein complex;0.0208670637721512!GO:0019894;kinesin binding;0.0210271615135573!GO:0042802;identical protein binding;0.0213073286365905!GO:0009066;aspartate family amino acid metabolic process;0.0213703764806037!GO:0030131;clathrin adaptor complex;0.022309614423129!GO:0008139;nuclear localization sequence binding;0.022345059910415!GO:0051539;4 iron, 4 sulfur cluster binding;0.0223562289574619!GO:0042026;protein refolding;0.0229493524056242!GO:0005092;GDP-dissociation inhibitor activity;0.0230126941476488!GO:0016049;cell growth;0.0230223036082102!GO:0051348;negative regulation of transferase activity;0.023134895610333!GO:0016859;cis-trans isomerase activity;0.0231383604924039!GO:0019904;protein domain specific binding;0.0235254256338829!GO:0007005;mitochondrion organization and biogenesis;0.0235993699504395!GO:0015992;proton transport;0.0236807512600188!GO:0019783;small conjugating protein-specific protease activity;0.0237292207702999!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0237292207702999!GO:0051726;regulation of cell cycle;0.0278629339932822!GO:0004843;ubiquitin-specific protease activity;0.028322308097916!GO:0005545;phosphatidylinositol binding;0.0285753687006674!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0286907180409049!GO:0000062;acyl-CoA binding;0.0287268367572412!GO:0004004;ATP-dependent RNA helicase activity;0.0289044575243517!GO:0000209;protein polyubiquitination;0.0291812307016711!GO:0030659;cytoplasmic vesicle membrane;0.0294900269027229!GO:0005762;mitochondrial large ribosomal subunit;0.0296831045677357!GO:0000315;organellar large ribosomal subunit;0.0296831045677357!GO:0019226;transmission of nerve impulse;0.0299053874858943!GO:0030663;COPI coated vesicle membrane;0.029940670377388!GO:0030126;COPI vesicle coat;0.029940670377388!GO:0043284;biopolymer biosynthetic process;0.0299688365015773!GO:0051789;response to protein stimulus;0.0304272738412699!GO:0006986;response to unfolded protein;0.0304272738412699!GO:0042578;phosphoric ester hydrolase activity;0.0306003051484951!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0313426203305387!GO:0019198;transmembrane receptor protein phosphatase activity;0.0313426203305387!GO:0050839;cell adhesion molecule binding;0.0322189668470383!GO:0043086;negative regulation of catalytic activity;0.0323088092852449!GO:0050803;regulation of synapse structure and activity;0.0325154676048501!GO:0019207;kinase regulator activity;0.0325154676048501!GO:0003690;double-stranded DNA binding;0.0326098554945019!GO:0042552;myelination;0.0326209000987021!GO:0031371;ubiquitin conjugating enzyme complex;0.0332789244882556!GO:0030125;clathrin vesicle coat;0.0334334168269267!GO:0030665;clathrin coated vesicle membrane;0.0334334168269267!GO:0006887;exocytosis;0.0335441840614921!GO:0007041;lysosomal transport;0.0342265399816202!GO:0032535;regulation of cellular component size;0.0342265399816202!GO:0016579;protein deubiquitination;0.0342265399816202!GO:0019911;structural constituent of myelin sheath;0.0342265399816202!GO:0007006;mitochondrial membrane organization and biogenesis;0.0342265399816202!GO:0004221;ubiquitin thiolesterase activity;0.0342265399816202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0342265399816202!GO:0050435;beta-amyloid metabolic process;0.034800359090118!GO:0000074;regulation of progression through cell cycle;0.0350638624413977!GO:0033116;ER-Golgi intermediate compartment membrane;0.0350638624413977!GO:0003711;transcription elongation regulator activity;0.0356399856685962!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0357001565435625!GO:0003725;double-stranded RNA binding;0.0358096949187284!GO:0004674;protein serine/threonine kinase activity;0.0361510343074738!GO:0008286;insulin receptor signaling pathway;0.0366950137617163!GO:0003713;transcription coactivator activity;0.036717728996261!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0368136983915019!GO:0004576;oligosaccharyl transferase activity;0.0371050796586291!GO:0001578;microtubule bundle formation;0.0372295263611933!GO:0015682;ferric iron transport;0.0373137908139239!GO:0015091;ferric iron transmembrane transporter activity;0.0373137908139239!GO:0031643;positive regulation of myelination;0.0373137908139239!GO:0006091;generation of precursor metabolites and energy;0.03781454670329!GO:0042158;lipoprotein biosynthetic process;0.0379954546151621!GO:0007030;Golgi organization and biogenesis;0.0383543695358582!GO:0006366;transcription from RNA polymerase II promoter;0.0385126740108752!GO:0006383;transcription from RNA polymerase III promoter;0.038602366952758!GO:0006633;fatty acid biosynthetic process;0.0386935467148123!GO:0006376;mRNA splice site selection;0.0387624746892384!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0387624746892384!GO:0006595;polyamine metabolic process;0.0390015729802808!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0392566600885449!GO:0005516;calmodulin binding;0.0411883845686246!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0412498967493029!GO:0006611;protein export from nucleus;0.0420670922110891!GO:0048468;cell development;0.0421142384995738!GO:0016615;malate dehydrogenase activity;0.0425406918060332!GO:0031628;opioid receptor binding;0.0425406918060332!GO:0031852;mu-type opioid receptor binding;0.0425406918060332!GO:0008088;axon cargo transport;0.0432079977585544!GO:0019201;nucleotide kinase activity;0.0433725987453809!GO:0030832;regulation of actin filament length;0.0437582343917716!GO:0005832;chaperonin-containing T-complex;0.0439405122808274!GO:0000096;sulfur amino acid metabolic process;0.0440480585941645!GO:0031123;RNA 3'-end processing;0.0462901861697529!GO:0044262;cellular carbohydrate metabolic process;0.0470902585997469!GO:0006629;lipid metabolic process;0.0475835267638942!GO:0006497;protein amino acid lipidation;0.0484369358201998!GO:0007243;protein kinase cascade;0.0495395448932079
 |sample_id=10033
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=pons
 |top_motifs=REST:4.12486325054;NHLH1,2:3.9933663035;ZFP161:3.34527032038;MYFfamily:3.20191944663;ATF2:3.10298241294;ZBTB6:3.07161878191;SOX5:2.96750654629;SOX2:2.94147323511;HIC1:2.81833196691;MED-1{core}:2.75993832686;LMO2:2.70460059676;MTE{core}:2.69857076748;MTF1:2.67513986259;SOX{8,9,10}:2.63528600498;NFIX:2.628509455;PAX5:2.58838574184;GCM1,2:2.52461376993;PRRX1,2:2.49631715155;JUN:2.4721548935;TFAP2B:2.46611345975;CUX2:2.46558633334;EGR1..3:2.41746152516;RREB1:2.41667122498;NKX3-2:2.3889868262;TGIF1:2.36879542494;SOX17:2.32684252733;GTF2I:2.28523076036;GATA4:2.21229011583;FOXM1:2.18797053688;NANOG:2.18150766395;PATZ1:2.17114879114;GFI1B:2.13575198711;XBP1:2.1336836547;PRDM1:2.11989567654;SMAD1..7,9:2.07648217162;RFX1:2.01994436825;MZF1:1.96274693808;AHR_ARNT_ARNT2:1.94066896308;EBF1:1.91031923191;LEF1_TCF7_TCF7L1,2:1.89105531392;NRF1:1.87187283709;KLF4:1.82288286554;BREu{core}:1.81316940538;MAZ:1.76527616483;EP300:1.71012778281;DBP:1.63216969506;HBP1_HMGB_SSRP1_UBTF:1.6018238729;SP1:1.59330824969;SREBF1,2:1.57057195006;HOXA9_MEIS1:1.56307485046;RBPJ:1.54117233978;TFDP1:1.48378554448;ARID5B:1.45817488176;MAFB:1.4494095597;POU6F1:1.44216098652;RFX2..5_RFXANK_RFXAP:1.44085496488;NKX2-3_NKX2-5:1.41079937748;FOX{I1,J2}:1.3777680262;FOXP3:1.36760376694;ESRRA:1.34508797378;POU5F1:1.33779060348;PAX6:1.27102592341;PDX1:1.24124886888;OCT4_SOX2{dimer}:1.23853540355;STAT1,3:1.23531235946;RORA:1.18228832842;CDC5L:1.1130088253;FOX{F1,F2,J1}:1.10518115827;ZNF143:1.0614333611;FOX{D1,D2}:0.995841687824;HOX{A4,D4}:0.987650453457;MYBL2:0.960832740106;FOXQ1:0.916933554628;CREB1:0.911618376485;TFAP2{A,C}:0.896611223606;ZNF423:0.866219022383;HMGA1,2:0.82812415683;MYOD1:0.803251045758;BPTF:0.799399896213;TLX1..3_NFIC{dimer}:0.779042363786;NFIL3:0.778920631341;FOXN1:0.727170110979;ZIC1..3:0.707989447207;SPZ1:0.698551137148;YY1:0.663804512067;XCPE1{core}:0.635240460004;ZEB1:0.61722643132;FOXA2:0.609890853152;GTF2A1,2:0.606652264639;NR3C1:0.582202798731;ADNP_IRX_SIX_ZHX:0.579790129892;HMX1:0.578244292968;ZNF384:0.551512060742;ONECUT1,2:0.548493194127;CRX:0.510421308792;AR:0.508770581327;NFY{A,B,C}:0.500777496497;ZNF238:0.49073848002;NR5A1,2:0.479381068045;MEF2{A,B,C,D}:0.451209759353;TLX2:0.447633636269;FOXO1,3,4:0.439705982879;GFI1:0.413430677395;ATF5_CREB3:0.37890628908;IRF7:0.377233946587;POU3F1..4:0.359447443087;GZF1:0.337416203024;FOXP1:0.297893908629;NFE2L2:0.26760184811;ATF4:0.154750361815;HAND1,2:0.146951547475;NKX6-1,2:0.135320721965;PAX2:0.121992337608;VSX1,2:0.092074633167;NFATC1..3:0.0283757844487;NR1H4:-0.0314661861875;NFE2L1:-0.033948309562;IKZF2:-0.0429674853807;T:-0.0433631737097;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0815069633666;GATA6:-0.0906592855848;TFAP4:-0.10894161344;IRF1,2:-0.111361846384;FOXD3:-0.113697409606;PAX3,7:-0.118182679023;ALX1:-0.164329710607;STAT2,4,6:-0.201248209591;HOX{A6,A7,B6,B7}:-0.223760746668;HSF1,2:-0.258425500752;TFCP2:-0.259527809773;SNAI1..3:-0.260014854499;NFE2:-0.312578509953;LHX3,4:-0.362594176384;TBX4,5:-0.368363745482;TEF:-0.404029029373;ETS1,2:-0.416738792856;PAX8:-0.436234988126;TOPORS:-0.43681893143;SPI1:-0.467965641021;POU1F1:-0.490255468176;ESR1:-0.501428837493;bHLH_family:-0.515214796301;ZNF148:-0.530213171204;PBX1:-0.53776386002;PAX4:-0.542036411505;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.547770019187;IKZF1:-0.563380195085;CEBPA,B_DDIT3:-0.574280510303;ELK1,4_GABP{A,B1}:-0.610682495837;SPIB:-0.612418937552;DMAP1_NCOR{1,2}_SMARC:-0.665218697161;HNF1A:-0.679013694786;UFEwm:-0.682450955204;NANOG{mouse}:-0.699181513103;PPARG:-0.702938882641;TP53:-0.773841761517;ATF6:-0.826016295774;ALX4:-0.843661773106;HNF4A_NR2F1,2:-0.848818474448;TAL1_TCF{3,4,12}:-0.850264141754;FOSL2:-0.860262913611;ELF1,2,4:-0.893171096037;BACH2:-0.907959245032;EVI1:-0.910772909676;TEAD1:-0.921299643815;PAX1,9:-0.925764197339;HLF:-0.967605832211;SRF:-0.96801058634;NKX3-1:-0.975679797488;FOS_FOS{B,L1}_JUN{B,D}:-1.01641078753;TBP:-1.06212674745;NFKB1_REL_RELA:-1.09256236912;RUNX1..3:-1.09606165993;FOXL1:-1.15326992355;E2F1..5:-1.15494013018;ZBTB16:-1.18231083208;HIF1A:-1.20859352484;NKX2-1,4:-1.26608731381;MYB:-1.27221221401;RXR{A,B,G}:-1.37611355183;GLI1..3:-1.51875411384;HES1:-1.52461719065;AIRE:-1.5914602296;POU2F1..3:-1.65663360107;PITX1..3:-1.68566490195;CDX1,2,4:-1.75050482477;EN1,2:-1.99162610511;RXRA_VDR{dimer}:-2.00720242936;NKX2-2,8:-2.04792626238;HOX{A5,B5}:-2.04827465569;STAT5{A,B}:-2.13934356882;NR6A1:-2.63843122458
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10033-101E6;search_select_hide=table117:FF:10033-101E6
 }}

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FF:10033-101E6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0