FF:10163-103B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005357 | ||
|HumanCAGEScanFiles=NCig10034;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/occipital%2520cortex%252c%2520adult%252c%2520donor10252.NCig10034.10163-103B1.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008691;DRR009563;DRZ000988;DRZ002373;DRZ012338;DRZ013723 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!333.32!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.32!207.68!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.29!216.46!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.19!155.00!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.64!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.99!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!85.08!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.91!103.76!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.90!77.58!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.88!74.23!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!102.33!ZBTB16;;chr17:53342311..53342400,+!p1@HLF!1.82!73.59!HLF;;chr2:145277882..145277967,-!p3@ZEB2!1.75!94.18!ZEB2;;chr14:29235961..29236008,+!p1@FOXG1!1.73!53.32!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.57!ZNF483;;chr12:26277817..26277863,-!p2@BHLHE41!1.69!64.17!BHLHE41;;chr10:134599649..134599653,-!p1@NKX6-2!1.69!47.73!NKX6-2;;chr10:64134120..64134183,+!p1@ZNF365!1.67!55.23!ZNF365;;chr8:145560111..145560165,-!p2@SCRT1!1.67!46.29!SCRT1;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.97!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.81!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.66!OLIG2;;chr19:13135386..13135435,+!p4@NFIX!1.64!42.78!NFIX;;chr8:53322347..53322378,-!p2@ST18!1.63!41.98!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.55!HIF3A;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.55!OLIG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.61!39.91!KCNIP3;;chr12:106976678..106976708,+!p2@RFX4!1.61!39.59!RFX4;;chr8:145560371..145560449,-!p1@SCRT1!1.61!39.43!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.59!131.38!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.59!38.15!NEUROD2;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.40!SOX8;;chr2:2334997..2335053,-!p1@MYT1L!1.57!35.76!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.56!35.44!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.56!35.28!BCL11A;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.52!EMX2;;chr5:88178983..88179012,-!p1@MEF2C!1.52!236.26!MEF2C;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.50!30.33!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.49!29.85!TBR1;;chr18:53070846..53070902,-!p6@TCF4!1.48!29.05!TCF4;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.83!ARNT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.46!28.10!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.46!27.78!RFX4;;chr5:92920256..92920282,+!p7@NR2F1!1.45!32.72!NR2F1;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.30!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.68!ZNF488;;chr3:126076242..126076257,-!p1@KLF15!1.44!32.88!KLF15;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.82!PAX6;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.86!SOX2;;chr17:7492684..7492778,-!p2@SOX15!1.41!51.08!SOX15;;chr11:8102846..8102892,+!p1@TUB!1.41!34.48!TUB;;chrX:25034067..25034088,-!p1@ARX!1.41!24.58!ARX;;chr1:214161272..214161322,+!p1@PROX1!1.39!33.04!PROX1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.47!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.47!FOXG1;;chr15:31658288..31658338,+!p4@KLF13!1.39!23.31!KLF13;;chr2:166326200..166326216,+!p1@CSRNP3!1.38!33.68!CSRNP3;;chr1:244219775..244219893,+!p2@ZNF238!1.38!30.81!ZNF238;;chr15:31631789..31631811,+!p13@KLF13!1.38!22.83!KLF13;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!22.83!PKNOX2;;chr16:85932760..85932775,+!p1@IRF8!1.37!22.51!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.37!22.35!SPI1;;chr1:61548069..61548102,+!p3@NFIA!1.36!52.68!NFIA;;chr6:143266185..143266238,-!p2@HIVEP2!1.35!29.05!HIVEP2;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.91!HIF3A;;chr19:7580549..7580596,+!p3@ZNF358!1.34!20.91!ZNF358;;chr22:41763452..41763466,+!p2@TEF!1.33!20.59!TEF;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.27!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!20.11!ZBED1;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.79!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.48!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.30!19.16!HOPX;;chr15:80735246..80735321,+!p3@ARNT2!1.28!18.04!ARNT2;;chr2:60780607..60780624,-!p2@BCL11A!1.26!52.20!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.26!27.78!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.18!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.26!17.24!NPAS3;;chr15:61521417..61521460,-!p2@RORA!1.25!37.35!RORA;;chr14:33408072..33408114,+!p2@NPAS3!1.23!18.68!NPAS3;;chr6:15401104..15401166,+!p5@JARID2!1.22!15.64!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.17!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.20!150.69!SOX9;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.90!BCL6;;chr6:126112039..126112062,+!p8@NCOA7!1.19!17.40!NCOA7;;chr17:38219209..38219230,+!p1@THRA!1.18!181.82!THRA;;chr15:80733570..80733659,+!p2@ARNT2!1.18!14.05!ARNT2;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.05!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.89!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.73!ZNF323;;chr2:2330039..2330072,-!p6@MYT1L!1.17!13.73!MYT1L;;chr9:77112225..7711223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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!333.32!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.32!207.68!OLIG1;;chr9:77112244..77112262,+!p1@RORB!2.29!216.46!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.19!155.00!SOX10;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.03!106.64!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.99!196.99!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.93!85.08!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.91!103.76!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.90!77.58!ST18;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.88!74.23!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!102.33!ZBTB16;;chr17:53342311..53342400,+!p1@HLF!1.82!73.59!HLF;;chr2:145277882..145277967,-!p3@ZEB2!1.75!94.18!ZEB2;;chr14:29235961..29236008,+!p1@FOXG1!1.73!53.32!FOXG1;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.57!ZNF483;;chr12:26277817..26277863,-!p2@BHLHE41!1.69!64.17!BHLHE41;;chr10:134599649..134599653,-!p1@NKX6-2!1.69!47.73!NKX6-2;;chr10:64134120..64134183,+!p1@ZNF365!1.67!55.23!ZNF365;;chr8:145560111..145560165,-!p2@SCRT1!1.67!46.29!SCRT1;;chr19:13135582..13135600,+!p3@NFIX!1.67!45.97!NFIX;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.81!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.67!45.66!OLIG2;;chr19:13135386..13135435,+!p4@NFIX!1.64!42.78!NFIX;;chr8:53322347..53322378,-!p2@ST18!1.63!41.98!ST18;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.55!HIF3A;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.55!OLIG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.61!39.91!KCNIP3;;chr12:106976678..106976708,+!p2@RFX4!1.61!39.59!RFX4;;chr8:145560371..145560449,-!p1@SCRT1!1.61!39.43!SCRT1;;chr12:26277956..26277980,-!p1@BHLHE41!1.59!131.38!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.59!38.15!NEUROD2;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.40!SOX8;;chr2:2334997..2335053,-!p1@MYT1L!1.57!35.76!MYT1L;;chr12:54779511..54779577,-!p5@ZNF385A!1.56!35.44!ZNF385A;;chr2:60781201..60781258,-!p3@BCL11A!1.56!35.28!BCL11A;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.52!EMX2;;chr5:88178983..88179012,-!p1@MEF2C!1.52!236.26!MEF2C;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.50!30.33!SMARCE1;;chr2:162272785..162272836,+!p1@TBR1!1.49!29.85!TBR1;;chr18:53070846..53070902,-!p6@TCF4!1.48!29.05!TCF4;;chr15:80696703..80696754,+!p1@ARNT2!1.47!37.83!ARNT2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.46!28.10!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.46!27.78!RFX4;;chr5:92920256..92920282,+!p7@NR2F1!1.45!32.72!NR2F1;;chr14:29236269..29236285,+!p3@FOXG1!1.45!27.30!FOXG1;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.68!ZNF488;;chr3:126076242..126076257,-!p1@KLF15!1.44!32.88!KLF15;;chr11:31832862..31832884,-!p2@PAX6!1.44!26.82!PAX6;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.86!SOX2;;chr17:7492684..7492778,-!p2@SOX15!1.41!51.08!SOX15;;chr11:8102846..8102892,+!p1@TUB!1.41!34.48!TUB;;chrX:25034067..25034088,-!p1@ARX!1.41!24.58!ARX;;chr1:214161272..214161322,+!p1@PROX1!1.39!33.04!PROX1;;chr9:126774018..126774055,+!p1@LHX2!1.39!23.47!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.39!23.47!FOXG1;;chr15:31658288..31658338,+!p4@KLF13!1.39!23.31!KLF13;;chr2:166326200..166326216,+!p1@CSRNP3!1.38!33.68!CSRNP3;;chr1:244219775..244219893,+!p2@ZNF238!1.38!30.81!ZNF238;;chr15:31631789..31631811,+!p13@KLF13!1.38!22.83!KLF13;;chr11:125034640..125034655,+!p1@PKNOX2!1.38!22.83!PKNOX2;;chr16:85932760..85932775,+!p1@IRF8!1.37!22.51!IRF8;;chr11:47400078..47400106,-!p1@SPI1!1.37!22.35!SPI1;;chr1:61548069..61548102,+!p3@NFIA!1.36!52.68!NFIA;;chr6:143266185..143266238,-!p2@HIVEP2!1.35!29.05!HIVEP2;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.91!HIF3A;;chr19:7580549..7580596,+!p3@ZNF358!1.34!20.91!ZNF358;;chr22:41763452..41763466,+!p2@TEF!1.33!20.59!TEF;;chr14:33403881..33403924,+!p1@NPAS3!1.33!20.27!NPAS3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!20.11!ZBED1;;chr12:103351444..103351461,+!p1@ASCL1!1.32!19.79!ASCL1;;chr11:113930401..113930422,+!p3@ZBTB16!1.31!19.48!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.30!19.16!HOPX;;chr15:80735246..80735321,+!p3@ARNT2!1.28!18.04!ARNT2;;chr2:60780607..60780624,-!p2@BCL11A!1.26!52.20!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!1.26!27.78!ZBTB16;;chr12:54785074..54785122,-!p2@ZNF385A!1.26!26.18!ZNF385A;;chr14:33403648..33403710,+!p3@NPAS3!1.26!17.24!NPAS3;;chr15:61521417..61521460,-!p2@RORA!1.25!37.35!RORA;;chr14:33408072..33408114,+!p2@NPAS3!1.23!18.68!NPAS3;;chr6:15401104..15401166,+!p5@JARID2!1.22!15.64!JARID2;;chr7:63505799..63505904,+!p1@ZNF727!1.21!15.17!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.20!150.69!SOX9;;chr3:187463179..187463201,-!p2@BCL6!1.19!58.90!BCL6;;chr6:126112039..126112062,+!p8@NCOA7!1.19!17.40!NCOA7;;chr17:38219209..38219230,+!p1@THRA!1.18!181.82!THRA;;chr15:80733570..80733659,+!p2@ARNT2!1.18!14.05!ARNT2;;chr16:67198633..67198671,+!p1@HSF4!1.18!14.05!HSF4;;chr5:71803177..71803255,-!p1@ZNF366!1.17!13.89!ZNF366;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.73!ZNF323;;chr2:2330039..2330072,-!p6@MYT1L!1.17!13.73!MYT1L;;chr9:77112225..77112238,+!p2@RORB!1.16!13.57!RORB;;chr2:95963120..95963136,+!p2@KCNIP3!1.16!13.41!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!1.16!13.41!ZBTB20;;chr9:126773880..126773895,+!p2@LHX2!1.15!13.25!LHX2;;chr16:67198683..67198698,+!p2@HSF4!1.15!13.09!HSF4;;chr9:3525867..3525902,-!p3@RFX3!1.14!44.70!RFX3;;chr21:39870339..39870443,-!p1@ERG!1.14!12.93!ERG;;chr19:30863271..30863338,+!p1@ZNF536!1.14!12.93!ZNF536;;chr17:38256822..38256851,-!p1@NR1D1!1.13!97.54!NR1D1;;chr5:88179017..88179046,-!p2@MEF2C!1.13!50.13!MEF2C;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.61!PKNOX2;;chr1:40105299..40105326,-!p1@HEYL!1.13!12.61!HEYL;;chr12:24715376..24715432,-!p1@SOX5!1.12!15.32!SOX5;;chr6:19837592..19837621,+!p1@ID4!1.11!72.63!ID4;;chr18:52989031..52989079,-!p2@TCF4!1.11!28.10!TCF4;;chrX:70315688..70315709,+!p1@FOXO4!1.11!27.78!FOXO4;;chr2:2328299..2328363,-!p3@MYT1L!1.11!11.97!MYT1L;;chr8:30890810..30890880,-!p1@PURG!1.10!11.49!PURG;;chr15:31631813..31631825,+!p17@KLF13!1.09!11.33!KLF13;;chr2:180726291..180726311,-!p1@ZNF385B!1.09!11.33!ZNF385B;;chr2:162272889..162272915,+!p2@TBR1!1.09!11.17!TBR1;;chr3:18466787..18466839,-!p1@SATB1!1.08!50.13!SATB1;;chr9:3525910..3525955,-!p4@RFX3!1.08!33.36!RFX3;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.70!ZBTB20;;chr3:24536253..24536328,-!p1@THRB!1.08!20.91!THRB;;chr19:38085768..38085821,+!p1@ZNF540!1.08!16.60!ZNF540;;chr12:26277929..26277955,-!p3@BHLHE41!1.08!15.80!BHLHE41;;chr14:24020938..24020988,-!p1@ZFHX2!1.08!15.80!ZFHX2;;chr11:31832658..31832681,-!p1@PAX6!1.08!11.01!PAX6;;chr16:51185318..51185348,-!p2@SALL1!1.08!11.01!SALL1;;chr16:67197776..67197831,+!p4@HSF4!1.08!11.01!HSF4;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.01!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.07!10.86!PAX6;;chr9:14314946..14314983,-!p8@NFIB!1.07!10.70!NFIB;;chr5:138609489..138609542,+!p8@MATR3!1.07!10.70!MATR3;;chr19:13135566..13135577,+!p9@NFIX!1.07!10.70!NFIX;;chr21:34442584..34442587,+!p3@OLIG1!1.07!10.70!OLIG1;;chr3:18466660..18466676,-!p5@SATB1!1.06!12.45!SATB1;;chr19:57183114..57183145,-!p1@ZNF835!1.06!11.65!ZNF835;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.24!IKZF2;;chr8:60031682..60031710,-!p2@TOX!1.05!16.60!TOX;;chr16:86544113..86544145,+!p1@FOXF1!1.05!12.77!FOXF1;;chr15:61521462..61521482,-!p4@RORA!1.05!10.22!RORA;;chr13:100623375..100623425,-!p1@ZIC5!1.05!10.22!ZIC5;;chr8:10588010..10588030,-!p1@SOX7!1.05!10.22!SOX7;;chr3:126076264..126076305,-!p2@KLF15!1.04!13.89!KLF15;;chr6:126112074..126112144,+!p1@NCOA7!1.03!130.42!NCOA7;;chr1:8877692..8877732,-!p1@RERE!1.03!79.18!RERE;;chr2:200323414..200323455,-!p1@SATB2!1.03!21.07!SATB2;;chr7:64023410..64023428,-!p2@ZNF680!1.03!15.48!ZNF680;;chr5:88179518..88179569,-!p5@MEF2C!1.03!12.93!MEF2C;;chr7:39125511..39125560,+!p1@POU6F2!1.03!9.74!POU6F2;;chr19:57352109..57352153,-!p2@ZIM2!1.03!9.74!ZIM2;;chr12:106976656..106976672,+!p4@RFX4!1.03!9.74!RFX4;;chr7:73038839..73038862,-!p1@MLXIPL!1.02!9.58!MLXIPL;;chr2:162273196..162273210,+!p5@TBR1!1.02!9.58!TBR1;;chr2:162272716..162272753,+!p3@TBR1!1.02!9.42!TBR1;;chr2:162273254..162273267,+!p6@TBR1!1.02!9.42!TBR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr2:100721328..100721348,-!p4@AFF3!1.01!9.26!AFF3;;chr13:100634031..100634045,+!p1@ZIC2!1.01!9.26!ZIC2;;chr15:80696666..80696700,+!p4@ARNT2!1.01!9.26!ARNT2;;chr16:67197952..67197990,+!p5@HSF4!1.01!9.26!HSF4;;chr16:79634624..79634642,-!p1@MAF!1.00!36.56!MAF;;chr2:113057415..113057477,+!p3@ZC3H6!1.00!11.97!ZC3H6;;chr20:62680984..62680999,-!p1@SOX18!1.00!11.97!SOX18;;chr19:38720294..38720348,-!p1@DPF1!1.00!11.33!DPF1;;chr2:162273241..162273253,+!p4@TBR1!1.00!9.10!TBR1;;chr4:57547751..57547764,-!p6@HOPX!1.00!8.94!HOPX;;chr12:103352277..103352324,+!p2@ASCL1!1.00!8.94!ASCL1;;chr5:172483347..172483407,+!p1@C5orf41!0.99!67.21!CREBRF;;chr13:46549911..46549956,-!p3@ZC3H13!0.99!12.77!ZC3H13;;chr4:57522166..57522260,-!p2@HOPX!0.99!10.22!HOPX;;chr2:180726254..180726275,-!p4@ZNF385B!0.99!8.78!ZNF385B;;chr2:68592406..68592424,+!p1@PLEK!0.99!8.78!PLEK;;chr6:28321827..28321856,-!p5@ZNF323!0.99!8.78!ZNF323;;chr19:21512202..21512225,-!p1@ZNF708!0.98!45.34!ZNF708;;chr19:21512115..21512135,-!p3@ZNF708!0.98!17.72!ZNF708;;chr2:180726331..180726344,-!p5@ZNF385B!0.98!8.62!ZNF385B;;chr3:141105235..141105307,+!p7@ZBTB38!0.98!8.62!ZBTB38;;chr16:4323246..4323299,-!p5@TFAP4!0.98!8.46!TFAP4;;chr1:14075903..14075940,+!p1@PRDM2!0.97!182.30!PRDM2;;chr14:73360799..73360817,-!p1@DPF3!0.97!29.85!DPF3;;chr19:53636125..53636178,-!p1@ZNF415!0.97!24.10!ZNF415;;chr5:178368186..178368238,+!p1@ZNF454!0.97!15.32!ZNF454;;chr7:64023441..64023462,-!p1@ZNF680!0.96!66.89!ZNF680;;chr19:21512144..21512191,-!p2@ZNF708!0.96!39.11!ZNF708;;chr10:38265517..38265591,-!p1@ZNF25!0.96!32.41!ZNF25;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.87!ZFPM2;;chr6:108487289..108487302,+!p1@NR2E1!0.96!8.14!NR2E1;;chr15:61521495..61521506,-!p5@RORA!0.96!8.14!RORA;;chr16:67197654..67197716,+!p3@HSF4!0.96!8.14!HSF4;;chr5:139487363..139487444,+!p1@PURA!0.95!61.94!PURA;;chr14:21994337..21994442,-!p1@SALL2!0.95!22.67!SALL2;;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002021;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 39: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520cortex%252c%2520adult%252c%2520donor10252.CNhs12320.10163-103B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10163-103B1 | |id=FF:10163-103B1 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010163 | |is_a=EFO:0002091;;FF:0000002;;FF:0010163 | ||
|is_obsolete= | |is_obsolete= | ||
| | |library_id=CNhs12320 | ||
|library_id_phase_based=2:CNhs12320 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10163 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10163 | |||
|name=occipital cortex, adult, donor10252 | |name=occipital cortex, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 62: | ||
|profile_cagescan=NCig10034,,, | |profile_cagescan=NCig10034,,, | ||
|profile_hcage=CNhs12320,LSID913,release011,COMPLETED | |profile_hcage=CNhs12320,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 87: | Line 102: | ||
|top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733 | |top_motifs=DBP:3.88946881253;RREB1:3.64284049585;REST:3.46795473917;HOXA9_MEIS1:3.42977681827;CUX2:3.41378219144;MYFfamily:3.40137486392;PRRX1,2:3.32465038404;FOXP1:3.30257027681;ZFP161:3.28042031078;NHLH1,2:3.22834415441;AHR_ARNT_ARNT2:3.17875206167;ATF2:3.10162513208;EGR1..3:3.06462392223;PRDM1:3.00269612844;MED-1{core}:2.99981508086;FOXQ1:2.97291905611;MTE{core}:2.92908383671;SOX2:2.92876877326;PAX4:2.90278904178;BPTF:2.7987891738;FOXD3:2.79658929074;TFAP2B:2.73723158093;GTF2I:2.71007675153;OCT4_SOX2{dimer}:2.6828224335;MZF1:2.61522905402;PATZ1:2.60387095322;MTF1:2.5492628627;GATA4:2.54008769167;POU6F1:2.50541667901;ZBTB6:2.50175786337;HBP1_HMGB_SSRP1_UBTF:2.50155574363;SOX5:2.46808951996;POU5F1:2.46471150307;ZNF384:2.4403464076;HIC1:2.39818473584;PAX6:2.27608469623;NKX3-2:2.25214658562;IKZF2:2.22968123922;CDC5L:2.11397015256;NFIX:2.10032351377;SOX{8,9,10}:2.06998943992;FOXM1:2.06106351395;POU3F1..4:2.03554124766;TGIF1:1.92183999011;BREu{core}:1.90141579253;T:1.88938316207;RFX2..5_RFXANK_RFXAP:1.87667204852;NFIL3:1.85936093908;HMGA1,2:1.83034459119;SMAD1..7,9:1.81489759405;RFX1:1.81375322093;PAX5:1.78785305739;MAZ:1.78207556849;FOX{F1,F2,J1}:1.77468873393;POU1F1:1.75944117756;LMO2:1.75813274014;NKX6-1,2:1.70349867139;FOXL1:1.70212754448;GFI1B:1.6980404134;EP300:1.68371225139;XBP1:1.65101041035;ZBTB16:1.61644316902;HOX{A4,D4}:1.60804566042;TFDP1:1.60026872269;RBPJ:1.59531974207;ARID5B:1.59216003582;FOXP3:1.48203969715;KLF4:1.44725189047;NRF1:1.39634527666;TOPORS:1.38255210803;TEF:1.38010532869;AR:1.34552881436;FOX{D1,D2}:1.32697097868;ALX1:1.31101647709;SOX17:1.2878874311;STAT2,4,6:1.19000672617;SP1:1.1216063078;ZNF143:1.03946115281;LEF1_TCF7_TCF7L1,2:1.02779681429;STAT1,3:0.959238697585;FOX{I1,J2}:0.889437591463;EBF1:0.886459859507;NANOG:0.870230758849;GTF2A1,2:0.855744451395;TFAP2{A,C}:0.820241898816;CRX:0.812346248264;SPZ1:0.7877136316;FOXO1,3,4:0.755183106854;ADNP_IRX_SIX_ZHX:0.753354018971;MYBL2:0.749249399519;JUN:0.712874801867;MAFB:0.679726413324;ZNF238:0.669835349834;RORA:0.663431167599;ZNF423:0.662086290132;GCM1,2:0.640688934896;NR3C1:0.639567842979;HAND1,2:0.618911278712;GZF1:0.592669573272;TLX1..3_NFIC{dimer}:0.579597241891;TLX2:0.575493410173;SREBF1,2:0.562144945777;FOXN1:0.530030628124;CREB1:0.51362237061;HMX1:0.505732085109;ZEB1:0.439762350038;ZIC1..3:0.427231618798;AIRE:0.415947586801;ONECUT1,2:0.373960878335;IRF7:0.370115984496;GFI1:0.353945419136;HOX{A6,A7,B6,B7}:0.344016450146;MYOD1:0.324227299287;NKX2-3_NKX2-5:0.3162827325;LHX3,4:0.298179627654;MEF2{A,B,C,D}:0.195904223768;PITX1..3:0.135803223965;NKX2-2,8:0.133501856358;ATF5_CREB3:0.131894197096;NFATC1..3:0.123207353596;NFY{A,B,C}:0.121916048924;UFEwm:0.0848657952858;PAX2:0.0757404253344;XCPE1{core}:0.023631021531;IRF1,2:-0.0176152808878;CDX1,2,4:-0.0205651889763;PBX1:-0.17093478805;FOXA2:-0.214085018178;NKX3-1:-0.221794089676;DMAP1_NCOR{1,2}_SMARC:-0.225514258106;HSF1,2:-0.234296270731;YY1:-0.248465294295;ESRRA:-0.289723527681;ATF4:-0.390948141189;CEBPA,B_DDIT3:-0.393525587615;SPI1:-0.433321568234;NFE2L2:-0.439694162415;PDX1:-0.464867086338;EVI1:-0.46929243692;PAX1,9:-0.516136899291;IKZF1:-0.622379530879;NANOG{mouse}:-0.634136313854;VSX1,2:-0.66300659905;bHLH_family:-0.669428783383;SPIB:-0.674361960249;SNAI1..3:-0.694186071822;NFE2:-0.75342814125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.780784892423;PAX3,7:-0.782678958072;ETS1,2:-0.785685722114;TBX4,5:-0.78820828254;ATF6:-0.9149769085;GATA6:-0.925096185185;E2F1..5:-0.987790965725;NFE2L1:-1.02395109418;TEAD1:-1.04200757669;NR1H4:-1.05025432067;HIF1A:-1.05248032874;TP53:-1.05752724865;PAX8:-1.06080726342;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.11017519303;HNF4A_NR2F1,2:-1.12396099513;HNF1A:-1.13175234568;TFAP4:-1.18010035995;FOSL2:-1.18810163812;BACH2:-1.2178893125;NFKB1_REL_RELA:-1.21948083155;TAL1_TCF{3,4,12}:-1.22397594005;FOS_FOS{B,L1}_JUN{B,D}:-1.23236583656;TFCP2:-1.24268845024;RUNX1..3:-1.3079635734;POU2F1..3:-1.32332557213;ZNF148:-1.35159149905;ELF1,2,4:-1.3821580027;ELK1,4_GABP{A,B1}:-1.40442001524;ALX4:-1.4969450577;NR5A1,2:-1.4980553741;NKX2-1,4:-1.50693208261;TBP:-1.52172666063;PPARG:-1.56543189274;RXR{A,B,G}:-1.57943363702;HLF:-1.68213720348;RXRA_VDR{dimer}:-1.78572124689;MYB:-1.84526453359;GLI1..3:-1.85210153067;SRF:-1.92074923497;STAT5{A,B}:-1.93613959286;NR6A1:-1.98796498598;ESR1:-2.01428773496;HOX{A5,B5}:-2.50045977329;EN1,2:-2.71234494534;HES1:-3.00033863733 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10163-103B1;search_select_hide=table117:FF:10163-103B1 | |||
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}} | }} |
Latest revision as of 12:24, 3 June 2020
Name: | occipital cortex, adult, donor10252 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12320 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12320
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12320
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0607 |
10 | 10 | 0.0619 |
100 | 100 | 0.401 |
101 | 101 | 0.586 |
102 | 102 | 0.977 |
103 | 103 | 0.0634 |
104 | 104 | 0.149 |
105 | 105 | 0.109 |
106 | 106 | 0.0535 |
107 | 107 | 0.115 |
108 | 108 | 0.943 |
109 | 109 | 0.00144 |
11 | 11 | 0.0142 |
110 | 110 | 0.0484 |
111 | 111 | 0.221 |
112 | 112 | 0.325 |
113 | 113 | 0.579 |
114 | 114 | 0.19 |
115 | 115 | 0.943 |
116 | 116 | 0.133 |
117 | 117 | 0.0118 |
118 | 118 | 0.143 |
119 | 119 | 0.287 |
12 | 12 | 0.433 |
120 | 120 | 0.209 |
121 | 121 | 0.247 |
122 | 122 | 0.797 |
123 | 123 | 0.306 |
124 | 124 | 0.201 |
125 | 125 | 0.29 |
126 | 126 | 0.0267 |
127 | 127 | 0.401 |
128 | 128 | 0.197 |
129 | 129 | 0.567 |
13 | 13 | 0.00167 |
130 | 130 | 0.121 |
131 | 131 | 0.0673 |
132 | 132 | 0.555 |
133 | 133 | 0.127 |
134 | 134 | 0.591 |
135 | 135 | 0.322 |
136 | 136 | 0.00119 |
137 | 137 | 0.931 |
138 | 138 | 0.947 |
139 | 139 | 0.15 |
14 | 14 | 0.793 |
140 | 140 | 0.916 |
141 | 141 | 0.464 |
142 | 142 | 0.53 |
143 | 143 | 0.0928 |
144 | 144 | 0.922 |
145 | 145 | 0.144 |
146 | 146 | 0.506 |
147 | 147 | 0.903 |
148 | 148 | 0.241 |
149 | 149 | 0.161 |
15 | 15 | 0.105 |
150 | 150 | 0.157 |
151 | 151 | 0.673 |
152 | 152 | 0.0806 |
153 | 153 | 0.7 |
154 | 154 | 0.428 |
155 | 155 | 0.855 |
156 | 156 | 0.556 |
157 | 157 | 0.42 |
158 | 158 | 0.139 |
159 | 159 | 0.015 |
16 | 16 | 0.0303 |
160 | 160 | 0.232 |
161 | 161 | 0.252 |
162 | 162 | 0.621 |
163 | 163 | 0.721 |
164 | 164 | 0.0576 |
165 | 165 | 0.0707 |
166 | 166 | 0.865 |
167 | 167 | 0.814 |
168 | 168 | 0.42 |
169 | 169 | 0.0112 |
17 | 17 | 0.11 |
18 | 18 | 0.0762 |
19 | 19 | 0.207 |
2 | 2 | 0.801 |
20 | 20 | 0.202 |
21 | 21 | 0.0494 |
22 | 22 | 0.184 |
23 | 23 | 0.458 |
24 | 24 | 0.0219 |
25 | 25 | 0.443 |
26 | 26 | 5.56588e-4 |
27 | 27 | 0.625 |
28 | 28 | 0.654 |
29 | 29 | 0.00622 |
3 | 3 | 0.0513 |
30 | 30 | 0.869 |
31 | 31 | 0.918 |
32 | 32 | 0.0156 |
33 | 33 | 0.0501 |
34 | 34 | 0.636 |
35 | 35 | 0.596 |
36 | 36 | 0.16 |
37 | 37 | 0.0351 |
38 | 38 | 0.386 |
39 | 39 | 0.29 |
4 | 4 | 0.823 |
40 | 40 | 0.0282 |
41 | 41 | 0.277 |
42 | 42 | 0.229 |
43 | 43 | 0.133 |
44 | 44 | 0.132 |
45 | 45 | 0.656 |
46 | 46 | 0.063 |
47 | 47 | 0.0652 |
48 | 48 | 0.0675 |
49 | 49 | 0.293 |
5 | 5 | 0.753 |
50 | 50 | 0.438 |
51 | 51 | 0.364 |
52 | 52 | 0.543 |
53 | 53 | 0.734 |
54 | 54 | 0.373 |
55 | 55 | 0.774 |
56 | 56 | 0.461 |
57 | 57 | 0.43 |
58 | 58 | 0.302 |
59 | 59 | 0.0606 |
6 | 6 | 0.836 |
60 | 60 | 0.0785 |
61 | 61 | 0.077 |
62 | 62 | 0.17 |
63 | 63 | 0.244 |
64 | 64 | 0.196 |
65 | 65 | 0.271 |
66 | 66 | 0.169 |
67 | 67 | 0.433 |
68 | 68 | 0.152 |
69 | 69 | 0.417 |
7 | 7 | 0.0606 |
70 | 70 | 0.0574 |
71 | 71 | 0.00979 |
72 | 72 | 0.296 |
73 | 73 | 0.0249 |
74 | 74 | 0.956 |
75 | 75 | 0.0395 |
76 | 76 | 0.529 |
77 | 77 | 0.127 |
78 | 78 | 0.0047 |
79 | 79 | 0.4 |
8 | 8 | 0.0565 |
80 | 80 | 0.373 |
81 | 81 | 0.603 |
82 | 82 | 0.513 |
83 | 83 | 0.0695 |
84 | 84 | 0.723 |
85 | 85 | 0.225 |
86 | 86 | 0.233 |
87 | 87 | 5.05946e-5 |
88 | 88 | 0.738 |
89 | 89 | 0.258 |
9 | 9 | 0.301 |
90 | 90 | 0.0831 |
91 | 91 | 0.841 |
92 | 92 | 0.532 |
93 | 93 | 0.867 |
94 | 94 | 0.193 |
95 | 95 | 0.00869 |
96 | 96 | 0.894 |
97 | 97 | 0.762 |
98 | 98 | 0.267 |
99 | 99 | 0.552 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12320
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010163 occipital cortex - adult donor
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010163 (occipital cortex - adult donor)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)