FF:10037-101F1: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	nucleus accumbens, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10644
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	nucleus accumbens
dev stage	23-56 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	6070307
catalog number	Cat:636569
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005208

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10644		CAGE		DRX008689		DRR009561

Accession ID Hg19

Library id		BAM		CTSS
CNhs10644		DRZ000986		DRZ002371

Accession ID Hg38

Library id		BAM		CTSS
CNhs10644		DRZ012336		DRZ013721

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.346
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.333
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.0525
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.383
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.512
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.027
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.142
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0191
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0993
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.142
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.0993
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.027
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.17
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.3
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.027
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.027
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.161
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.218
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.018
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.027
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0987
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.394
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0525
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0525
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.618
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.027
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.18
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0337
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.102
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.416
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.027
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.027
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.334
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.232
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.537
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.327
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.667
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.027
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.131
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.161
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0.027
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0398
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.697
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0977
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.583
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.405
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0525
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.198
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.027
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10644

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0106
MA0003.1	MA0003.1	0.358
MA0004.1	MA0004.1	0.469
MA0006.1	MA0006.1	0.369
MA0007.1	MA0007.1	0.215
MA0009.1	MA0009.1	0.212
MA0014.1	MA0014.1	0.687
MA0017.1	MA0017.1	0.0031
MA0018.2	MA0018.2	0.0738
MA0019.1	MA0019.1	0.791
MA0024.1	MA0024.1	0.988
MA0025.1	MA0025.1	0.184
MA0027.1	MA0027.1	0.406
MA0028.1	MA0028.1	0.133
MA0029.1	MA0029.1	0.0541
MA0030.1	MA0030.1	0.193
MA0031.1	MA0031.1	0.972
MA0035.2	MA0035.2	0.128
MA0038.1	MA0038.1	0.0357
MA0039.2	MA0039.2	0.293
MA0040.1	MA0040.1	0.558
MA0041.1	MA0041.1	0.226
MA0042.1	MA0042.1	0.624
MA0043.1	MA0043.1	0.321
MA0046.1	MA0046.1	0.0986
MA0047.2	MA0047.2	0.132
MA0048.1	MA0048.1	0.118
MA0050.1	MA0050.1	0.018
MA0051.1	MA0051.1	0.141
MA0052.1	MA0052.1	0.119
MA0055.1	MA0055.1	0.00286
MA0057.1	MA0057.1	0.944
MA0058.1	MA0058.1	0.434
MA0059.1	MA0059.1	0.0813
MA0060.1	MA0060.1	0.194
MA0061.1	MA0061.1	0.00975
MA0062.2	MA0062.2	0.0351
MA0065.2	MA0065.2	4.9768e-4
MA0066.1	MA0066.1	0.0236
MA0067.1	MA0067.1	0.648
MA0068.1	MA0068.1	0.361
MA0069.1	MA0069.1	0.542
MA0070.1	MA0070.1	0.099
MA0071.1	MA0071.1	0.0255
MA0072.1	MA0072.1	0.418
MA0073.1	MA0073.1	0.37
MA0074.1	MA0074.1	0.211
MA0076.1	MA0076.1	0.328
MA0077.1	MA0077.1	0.28
MA0078.1	MA0078.1	0.793
MA0079.2	MA0079.2	0.376
MA0080.2	MA0080.2	3.85317e-8
MA0081.1	MA0081.1	0.0651
MA0083.1	MA0083.1	0.164
MA0084.1	MA0084.1	0.481
MA0087.1	MA0087.1	0.347
MA0088.1	MA0088.1	0.135
MA0090.1	MA0090.1	0.251
MA0091.1	MA0091.1	0.382
MA0092.1	MA0092.1	0.331
MA0093.1	MA0093.1	0.507
MA0099.2	MA0099.2	7.97974e-11
MA0100.1	MA0100.1	0.841
MA0101.1	MA0101.1	0.00927
MA0102.2	MA0102.2	0.205
MA0103.1	MA0103.1	0.227
MA0104.2	MA0104.2	0.45
MA0105.1	MA0105.1	5.466e-4
MA0106.1	MA0106.1	0.0278
MA0107.1	MA0107.1	0.0124
MA0108.2	MA0108.2	0.341
MA0111.1	MA0111.1	0.442
MA0112.2	MA0112.2	7.95935e-4
MA0113.1	MA0113.1	0.335
MA0114.1	MA0114.1	0.0031
MA0115.1	MA0115.1	0.304
MA0116.1	MA0116.1	0.00374
MA0117.1	MA0117.1	0.912
MA0119.1	MA0119.1	0.0473
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.581
MA0125.1	MA0125.1	0.172
MA0131.1	MA0131.1	0.921
MA0135.1	MA0135.1	0.0118
MA0136.1	MA0136.1	6.82446e-10
MA0137.2	MA0137.2	0.62
MA0138.2	MA0138.2	0.285
MA0139.1	MA0139.1	0.378
MA0140.1	MA0140.1	0.0176
MA0141.1	MA0141.1	0.0109
MA0142.1	MA0142.1	0.901
MA0143.1	MA0143.1	0.702
MA0144.1	MA0144.1	0.337
MA0145.1	MA0145.1	0.216
MA0146.1	MA0146.1	0.012
MA0147.1	MA0147.1	0.318
MA0148.1	MA0148.1	0.126
MA0149.1	MA0149.1	0.011
MA0150.1	MA0150.1	0.00183
MA0152.1	MA0152.1	0.865
MA0153.1	MA0153.1	0.637
MA0154.1	MA0154.1	0.035
MA0155.1	MA0155.1	0.701
MA0156.1	MA0156.1	4.90092e-5
MA0157.1	MA0157.1	0.545
MA0159.1	MA0159.1	0.00771
MA0160.1	MA0160.1	0.0339
MA0162.1	MA0162.1	0.109
MA0163.1	MA0163.1	1.73581e-6
MA0164.1	MA0164.1	0.673
MA0258.1	MA0258.1	0.00992
MA0259.1	MA0259.1	0.779

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10644

Novel motif	Logo	P-value
1	1	0.0299
10	10	0.0264
100	100	0.26
101	101	0.717
102	102	0.818
103	103	0.209
104	104	0.163
105	105	0.372
106	106	0.0516
107	107	0.126
108	108	0.771
109	109	0.00923
11	11	0.0136
110	110	0.0458
111	111	0.0536
112	112	0.351
113	113	0.658
114	114	0.0847
115	115	0.951
116	116	0.159
117	117	0.00991
118	118	0.12
119	119	0.0902
12	12	0.838
120	120	0.13
121	121	0.646
122	122	0.564
123	123	0.41
124	124	0.072
125	125	0.177
126	126	0.0343
127	127	0.466
128	128	0.157
129	129	0.543
13	13	0.00207
130	130	0.679
131	131	0.0397
132	132	0.732
133	133	0.0012
134	134	0.296
135	135	0.192
136	136	0.0133
137	137	0.751
138	138	0.818
139	139	0.0777
14	14	0.883
140	140	0.0974
141	141	0.185
142	142	0.772
143	143	0.0109
144	144	0.816
145	145	0.0964
146	146	0.585
147	147	0.926
148	148	0.0932
149	149	0.332
15	15	0.0805
150	150	0.178
151	151	0.595
152	152	0.125
153	153	0.736
154	154	0.576
155	155	0.354
156	156	0.492
157	157	0.494
158	158	0.755
159	159	0.0533
16	16	0.0659
160	160	0.184
161	161	0.254
162	162	0.942
163	163	0.991
164	164	0.0185
165	165	0.0374
166	166	0.86
167	167	0.283
168	168	0.621
169	169	0.00686
17	17	0.151
18	18	0.178
19	19	0.175
2	2	0.984
20	20	0.0864
21	21	0.0868
22	22	0.242
23	23	0.432
24	24	0.136
25	25	0.479
26	26	1.99153e-4
27	27	0.888
28	28	0.723
29	29	0.0121
3	3	0.0287
30	30	0.575
31	31	0.86
32	32	0.0261
33	33	0.0732
34	34	0.803
35	35	0.483
36	36	0.0835
37	37	0.0345
38	38	0.313
39	39	0.271
4	4	0.889
40	40	0.0465
41	41	0.458
42	42	0.193
43	43	0.104
44	44	0.0872
45	45	0.805
46	46	0.0534
47	47	0.0576
48	48	0.0545
49	49	0.12
5	5	0.437
50	50	0.368
51	51	0.51
52	52	0.658
53	53	0.954
54	54	0.467
55	55	0.349
56	56	0.484
57	57	0.23
58	58	0.29
59	59	0.121
6	6	0.569
60	60	0.0831
61	61	0.0874
62	62	0.168
63	63	0.158
64	64	0.173
65	65	0.26
66	66	0.271
67	67	0.329
68	68	0.395
69	69	0.28
7	7	0.0696
70	70	0.0142
71	71	0.0102
72	72	0.449
73	73	0.0419
74	74	0.525
75	75	0.0266
76	76	0.36
77	77	0.188
78	78	0.002
79	79	0.134
8	8	0.0503
80	80	0.976
81	81	0.502
82	82	0.387
83	83	0.219
84	84	0.713
85	85	0.182
86	86	0.203
87	87	0.00611
88	88	0.843
89	89	0.497
9	9	0.545
90	90	0.0365
91	91	0.309
92	92	0.4
93	93	0.784
94	94	0.0575
95	95	0.031
96	96	0.9
97	97	0.778
98	98	0.173
99	99	0.635

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10644

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010037 human nucleus accumbens - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001882 (nucleus accumbens)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000349 (limbic system)
0005403 (ventral striatum)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010037 (human nucleus accumbens - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008580
+|DRA_sample_Accession=CAGE@SAMD00005208
-|accession_numbers=CAGE;DRX008689;DRR009561;DRZ000986;DRZ002371
+|accession_numbers=CAGE;DRX008689;DRR009561;DRZ000986;DRZ002371;DRZ012336;DRZ013721
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001882,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000349,UBERON:0005403,UBERON:0010011,UBERON:0000204,UBERON:0000454
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.52!332.90!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.47!297.19!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.36!225.51!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.14!135.59!SOX10;;chr9:114287433..114287513,+!p1@ZNF483!1.98!233.47!ZNF483;;chr11:61520075..61520136,+!p1@C11orf9!1.98!195.71!C11orf9;;chr17:53342311..53342400,+!p1@HLF!1.98!107.39!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.90!77.65!OLIG2;;chr15:80735246..80735321,+!p3@ARNT2!1.85!69.62!ARNT2;;chr9:77112244..77112262,+!p1@RORB!1.83!73.74!RORB;;chr2:166326200..166326216,+!p1@CSRNP3!1.80!90.05!CSRNP3;;chr14:29235961..29236008,+!p1@FOXG1!1.80!62.50!FOXG1;;chr3:181429704..181429722,+!p1@SOX2!1.78!59.54!SOX2;;chr2:145277882..145277967,-!p3@ZEB2!1.77!96.66!ZEB2;;chr2:2334997..2335053,-!p1@MYT1L!1.76!56.01!MYT1L;;chr8:40755333..40755352,-!p1@ZMAT4!1.70!48.94!ZMAT4;;chr8:53322304..53322340,-!p1@ST18!1.68!46.69!ST18;;chr10:64134120..64134183,+!p1@ZNF365!1.65!52.15!ZNF365;;chr14:29234581..29234601,+!p2@FOXG1!1.65!43.61!FOXG1;;chr15:80733570..80733659,+!p2@ARNT2!1.64!42.33!ARNT2;;chr4:57547454..57547469,-!p1@HOPX!1.63!41.43!HOPX;;chr12:26277817..26277863,-!p2@BHLHE41!1.62!54.85!BHLHE41;;chr2:60781201..60781258,-!p3@BCL11A!1.60!39.05!BCL11A;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.60!38.54!SMARCE1;;chr5:88178983..88179012,-!p1@MEF2C!1.58!270.28!MEF2C;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!36.61!POU3F3;;chr17:37764128..37764258,-!p1@NEUROD2!1.56!35.52!NEUROD2;;chr2:95963052..95963106,+!p1@KCNIP3!1.56!35.26!KCNIP3;;chr2:162272785..162272836,+!p1@TBR1!1.53!32.69!TBR1;;chr3:181429741..181429767,+!p2@SOX2!1.52!32.11!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.51!31.60!OLIG1;;chr16:1031762..1031781,+!p1@SOX8!1.50!30.51!SOX8;;chr15:80696703..80696754,+!p1@ARNT2!1.43!33.91!ARNT2;;chr14:29236269..29236285,+!p3@FOXG1!1.43!26.08!FOXG1;;chr19:57352109..57352153,-!p2@ZIM2!1.43!25.88!ZIM2;;chr4:81118647..81118666,+!p1@PRDM8!1.42!33.21!PRDM8;;chr12:106976774..106976788,+!p1@RFX4!1.42!25.43!RFX4;;chr14:33403881..33403924,+!p1@NPAS3!1.42!25.11!NPAS3;;chr7:31380292..31380351,-!p1@NEUROD6!1.41!24.92!NEUROD6;;chr1:2461692..2461710,-!p1@HES5!1.39!23.76!HES5;;chr19:13135386..13135435,+!p4@NFIX!1.39!23.51!NFIX;;chr2:73520667..73520683,-!p1@EGR4!1.38!22.74!EGR4;;chrX:85969626..85969664,+!p1@DACH2!1.38!22.74!DACH2;;chrX:82763292..82763317,+!p1@POU3F4!1.36!22.03!POU3F4;;chrX:25034067..25034088,-!p1@ARX!1.34!21.00!ARX;;chr12:54779511..54779577,-!p5@ZNF385A!1.34!21.00!ZNF385A;;chr22:41763452..41763466,+!p2@TEF!1.34!20.87!TEF;;chr7:63505799..63505904,+!p1@ZNF727!1.34!20.81!ZNF727;;chr6:19837592..19837621,+!p1@ID4!1.33!122.29!ID4;;chr12:106976678..106976708,+!p2@RFX4!1.33!20.23!RFX4;;chr19:13135582..13135600,+!p3@NFIX!1.32!20.10!NFIX;;chr2:95963120..95963136,+!p2@KCNIP3!1.31!19.59!KCNIP3;;chr5:88179017..88179046,-!p2@MEF2C!1.30!74.38!MEF2C;;chr19:38085768..38085821,+!p1@ZNF540!1.30!28.13!ZNF540;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.56!KDM5D;;chr18:53070846..53070902,-!p6@TCF4!1.29!18.50!TCF4;;chr10:134599649..134599653,-!p1@NKX6-2!1.29!18.31!NKX6-2;;chr8:53322347..53322378,-!p2@ST18!1.28!18.05!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.27!24.73!PROX1;;chr4:57522166..57522260,-!p2@HOPX!1.26!19.59!HOPX;;chr11:125034640..125034655,+!p1@PKNOX2!1.26!17.41!PKNOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.26!17.28!HIF3A;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.73!EGR3;;chr11:8102846..8102892,+!p1@TUB!1.23!22.16!TUB;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.23!15.93!POU3F3;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.42!ZBTB16;;chr9:126774018..126774055,+!p1@LHX2!1.22!15.67!LHX2;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.78!ZNF488;;chr19:38720294..38720348,-!p1@DPF1!1.21!19.14!DPF1;;chr1:151032860..151032918,+!p1@MLLT11!1.18!167.06!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!1.18!50.68!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.18!30.06!SOX15;;chr19:30863271..30863338,+!p1@ZNF536!1.16!13.36!ZNF536;;chr1:244214577..244214593,+!p1@ZNF238!1.15!13.17!ZNF238;;chrX:118739835..118739862,-!p1@NKRF!1.14!14.26!NKRF;;chr10:64133862..64133884,+!p4@ZNF365!1.14!12.78!ZNF365;;chr10:119302232..119302265,+!p1@EMX2!1.14!12.65!EMX2;;chr7:150974206..150974255,-!p1@SMARCD3!1.13!77.97!SMARCD3;;chr18:55102598..55102623,+!p1@ONECUT2!1.13!12.59!ONECUT2;;chr2:42721205..42721307,+!p4@MTA3!1.12!12.20!MTA3;;chr1:165414325..165414369,-!p1@RXRG!1.12!12.20!RXRG;;chr2:166428839..166428859,+!p2@CSRNP3!1.12!12.08!CSRNP3;;chr2:162272889..162272915,+!p2@TBR1!1.11!12.01!TBR1;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!12.01!ZSCAN1;;chr3:24536253..24536328,-!p1@THRB!1.10!22.22!THRB;;chr2:145275982..145276003,-!p7@ZEB2!1.10!11.56!ZEB2;;chr6:126112039..126112062,+!p8@NCOA7!1.09!13.62!NCOA7;;chr19:46800289..46800327,+!p2@HIF3A!1.09!11.37!HIF3A;;chr16:85932760..85932775,+!p1@IRF8!1.09!11.24!IRF8;;chr17:70117153..70117174,+!p1@SOX9!1.08!114.78!SOX9;;chr3:141105705..141105770,+!p4@ZBTB38!1.08!13.30!ZBTB38;;chr16:51185318..51185348,-!p2@SALL1!1.08!10.98!SALL1;;chr8:22550530..22550609,-!p2@EGR3!1.08!10.98!EGR3;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.61!HEY1;;chr14:33408072..33408114,+!p2@NPAS3!1.07!12.72!NPAS3;;chr6:126070769..126070801,+!p1@HEY2!1.07!12.46!HEY2;;chr11:31832658..31832681,-!p1@PAX6!1.07!10.85!PAX6;;chr1:8585945..8586056,-!p3@RERE!1.06!35.33!RERE;;chr20:62680984..62680999,-!p1@SOX18!1.06!14.00!SOX18;;chr6:15401104..15401166,+!p5@JARID2!1.06!10.53!JARID2;;chr17:38219209..38219230,+!p1@THRA!1.05!134.56!THRA;;chr1:61548069..61548102,+!p3@NFIA!1.05!24.92!NFIA;;chr2:2335109..2335134,-!p2@MYT1L!1.05!10.34!MYT1L;;chr3:126076242..126076257,-!p1@KLF15!1.04!12.52!KLF15;;chr12:54785074..54785122,-!p2@ZNF385A!1.03!15.22!ZNF385A;;chr3:25469724..25469773,+!p1@RARB!1.03!14.26!RARB;;chr11:125034605..125034636,+!p2@PKNOX2!1.03!9.83!PKNOX2;;chr2:2328299..2328363,-!p3@MYT1L!1.03!9.76!MYT1L;;chr2:2335070..2335098,-!p4@MYT1L!1.03!9.63!MYT1L;;chr3:21792682..21792720,-!p1@ZNF385D!1.02!9.51!ZNF385D;;chr22:41763274..41763318,+!p3@TEF!1.02!9.44!TEF;;chr2:180726291..180726311,-!p1@ZNF385B!1.02!9.38!ZNF385B;;chr1:151032922..151032951,+!p2@MLLT11!1.01!15.48!MLLT11;;chr1:38512457..38512474,-!p1@POU3F1!1.01!10.28!POU3F1;;chr11:66188503..66188511,+!p1@NPAS4!1.01!9.31!NPAS4;;chr19:49140609..49140643,-!p1@DBP!1.00!52.54!DBP;;chr13:72441315..72441454,-!p1@DACH1!1.00!18.24!DACH1;;chr3:24536332..24536358,-!p2@THRB!0.99!8.86!THRB;;chr2:2330039..2330072,-!p6@MYT1L!0.99!8.74!MYT1L;;chr8:30890810..30890880,-!p1@PURG!0.99!8.67!PURG;;chr14:21994337..21994442,-!p1@SALL2!0.98!24.21!SALL2;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.78!NFIX;;chr11:31832862..31832884,-!p2@PAX6!0.98!8.61!PAX6;;chr21:39870339..39870443,-!p1@ERG!0.98!8.48!ERG;;chr10:64133910..64133925,+!p5@ZNF365!0.97!8.41!ZNF365;;chr2:180726331..180726344,-!p5@ZNF385B!0.97!8.41!ZNF385B;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.96!17.66!ZNF395;;chr3:33482052..33482116,-!p2@UBP1!0.96!12.65!UBP1;;chr19:57183114..57183145,-!p1@ZNF835!0.96!9.12!ZNF835;;chr7:96654133..96654150,-!p1@DLX5!0.96!8.22!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.96!8.16!RUNX1T1;;chr4:57522598..57522664,-!p3@HOPX!0.96!8.03!HOPX;;chr1:40105299..40105326,-!p1@HEYL!0.96!8.03!HEYL;;chr5:138609489..138609542,+!p8@MATR3!0.95!7.96!MATR3;;chr2:42721689..42721723,+!p6@MTA3!0.95!7.96!MTA3;;chr2:2328095..2328125,-!p7@MYT1L!0.95!7.90!MYT1L;;chr12:24102576..24102623,-!p2@SOX5!0.95!7.84!SOX5;;chr7:28725740..28725778,+!p1@CREB5!0.94!71.17!CREB5;;chr22:41777927..41777971,+!p1@TEF!0.94!66.80!TEF;;chr3:141105235..141105307,+!p7@ZBTB38!0.94!7.77!ZBTB38;;chr11:47400078..47400106,-!p1@SPI1!0.94!7.64!SPI1;;chr6:143266185..143266238,-!p2@HIVEP2!0.93!10.60!HIVEP2;;chr15:80696410..80696477,+!p6@ARNT2!0.93!7.58!ARNT2;;chr14:33403648..33403710,+!p3@NPAS3!0.93!7.58!NPAS3;;chr3:114173720..114173794,-!p6@ZBTB20!0.93!7.51!ZBTB20;;chr17:38219143..38219154,+!p2@THRA!0.92!26.59!THRA;;chr2:60780607..60780624,-!p2@BCL11A!0.92!23.51!BCL11A;;chr12:26277929..26277955,-!p3@BHLHE41!0.92!10.66!BHLHE41;;chr1:151032739..151032748,+!p6@MLLT11!0.92!9.38!MLLT11;;chrX:118739782..118739829,-!p2@NKRF!0.92!7.39!NKRF;;chrY:21906761..21906810,-!p2@KDM5D!0.92!7.32!KDM5D;;chr9:126773880..126773895,+!p2@LHX2!0.92!7.32!LHX2;;chr16:51185172..51185197,-!p1@SALL1!0.92!7.32!SALL1;;chr5:178368186..178368238,+!p1@ZNF454!0.91!13.17!ZNF454;;chr2:192015750..192015793,-!p2@STAT4!0.91!9.83!STAT4;;chr1:167298300..167298319,+!p2@POU2F1!0.91!7.13!POU2F1;;chr12:52437488..52437507,+!p2@NR4A1!0.91!7.13!NR4A1;;chr8:145560371..145560449,-!p1@SCRT1!0.91!7.13!SCRT1;;chr9:77112225..77112238,+!p2@RORB!0.91!7.13!RORB;;chr17:38256822..38256851,-!p1@NR1D1!0.90!57.74!NR1D1;;chr7:14029283..14029311,-!p1@ETV1!0.90!38.34!ETV1;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.79!PBX1;;chr3:114819124..114819200,-!p3@ZBTB20!0.90!16.57!ZBTB20;;chr15:31658288..31658338,+!p4@KLF13!0.90!6.94!KLF13;;chr14:29237009..29237049,+!p4@FOXG1!0.90!6.94!FOXG1;;chr11:125034586..125034604,+!p3@PKNOX2!0.90!6.87!PKNOX2;;chr21:34442584..34442587,+!p3@OLIG1!0.90!6.87!OLIG1;;chr2:166428861..166428883,+!p3@CSRNP3!0.90!6.87!CSRNP3;;chrX:101186981..101187030,-!p1@ZMAT1!0.89!23.12!ZMAT1;;chr19:49139477..49139552,-!p4@DBP!0.89!8.80!DBP;;chr10:64134045..64134083,+!p3@ZNF365!0.89!6.74!ZNF365;;chr6:126112074..126112144,+!p1@NCOA7!0.88!92.49!NCOA7;;chr6:1312325..1312340,+!p1@FOXQ1!0.88!11.05!FOXQ1;;chr11:8102819..8102845,+!p3@TUB!0.88!8.35!TUB;;chr19:37998036..37998098,+!p2@ZNF793!0.88!8.35!ZNF793;;chr6:108487289..108487302,+!p1@NR2E1!0.88!6.62!NR2E1;;chr7:96635178..96635181,+!p1@DLX6!0.88!6.62!DLX6;;chr2:2328725..2328739,-!p5@MYT1L!0.88!6.62!MYT1L;;chr5:71803177..71803255,-!p1@ZNF366!0.88!6.55!ZNF366;;chr7:73038839..73038862,-!p1@MLXIPL!0.88!6.55!MLXIPL;;chr15:31618903..31618962,+!p3@KLF13!0.87!18.24!KLF13;;chr5:92920256..92920282,+!p7@NR2F1!0.87!7.84!NR2F1;;chr18:53070913..53070933,-!p16@TCF4!0.87!6.42!TCF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.87!6.36!ONECUT2;;chr2:45168997..45169020,+!p4@SIX3!0.87!6.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/nucleus%2520accumbens%252c%2520adult%252c%2520pool1.CNhs10644.10037-101F1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10037-101F1
 |is_a=EFO:0002091;;FF:0010037
 |is_obsolete=
 |library_id=CNhs10644
-|library_id_phase_based=1:CNhs10644
+|library_id_phase_based=2:CNhs10644
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10037
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10037
 |name=nucleus accumbens, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10644,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10037-101F1;search_select_hide=table117:FF:10037-101F1
 }}

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FF:10037-101F1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0