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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005672
|DRA_sample_Accession=CAGE@SAMD00005672
|accession_numbers=CAGE;DRX008728;DRR009600;DRZ001025;DRZ002410
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005672
|HumanCAGEScanFiles=NCig10030;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spinal%2520cord%252c%2520adult%252c%2520donor10252.NCig10030.10159-103A6.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008728;DRR009600;DRZ001025;DRZ002410;DRZ012375;DRZ013760
|accession_numbers_RNASeq=sRNA-Seq;DRX037339;DRR041705;DRZ007347
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|def=
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.59!391.80!TSC22D4;;chr8:53322304..53322340,-!p1@ST18!2.32!206.45!ST18;;chr22:38380543..38380569,-!p1@SOX10!2.28!187.44!SOX10;;chr12:106976774..106976788,+!p1@RFX4!2.24!173.48!RFX4;;chr21:34442439..34442455,+!p1@OLIG1!2.18!152.09!OLIG1;;chr12:26277817..26277863,-!p2@BHLHE41!2.11!170.21!BHLHE41;;chr11:61520075..61520136,+!p1@C11orf9!1.98!195.75!C11orf9;;chr2:145277882..145277967,-!p3@ZEB2!1.95!150.01!ZEB2;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.84!67.43!POU3F3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.83!66.84!PEG3;;chr12:106976678..106976708,+!p2@RFX4!1.81!63.57!RFX4;;chr12:26277956..26277980,-!p1@BHLHE41!1.80!215.36!BHLHE41;;chr8:53322347..53322378,-!p2@ST18!1.76!56.74!ST18;;chr4:81118647..81118666,+!p1@PRDM8!1.74!69.81!PRDM8;;chr19:46801639..46801699,+!p1@HIF3A!1.73!52.28!HIF3A;;chr16:85932760..85932775,+!p1@IRF8!1.68!46.34!IRF8;;chr3:181429741..181429767,+!p2@SOX2!1.66!44.26!SOX2;;chr11:47400078..47400106,-!p1@SPI1!1.65!43.37!SPI1;;chr3:187463179..187463201,-!p2@BCL6!1.63!164.56!BCL6;;chr9:114287433..114287513,+!p1@ZNF483!1.63!103.97!ZNF483;;chr11:31832658..31832681,-!p1@PAX6!1.61!40.10!PAX6;;chr1:214161272..214161322,+!p1@PROX1!1.57!50.50!PROX1;;chr11:113930425..113930471,+!p1@ZBTB16!1.56!50.20!ZBTB16;;chr1:61548069..61548102,+!p3@NFIA!1.55!81.39!NFIA;;chr10:48355030..48355090,+!p1@ZNF488!1.54!42.77!ZNF488;;chr10:134599649..134599653,-!p1@NKX6-2!1.53!32.68!NKX6-2;;chr12:26277929..26277955,-!p3@BHLHE41!1.51!43.67!BHLHE41;;chr21:34442540..34442560,+!p2@OLIG1!1.50!30.89!OLIG1;;chr12:54779511..54779577,-!p5@ZNF385A!1.49!29.70!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.48!29.41!TFEC;;chr4:57547454..57547469,-!p1@HOPX!1.47!28.81!HOPX;;chr20:51588873..51588953,+!p1@TSHZ2!1.45!35.65!TSHZ2;;chr6:28321971..28321995,-!p1@ZNF323!1.44!26.73!ZNF323;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.44!26.44!POU3F3;;chr21:34398234..34398250,+!p1@OLIG2!1.42!25.25!OLIG2;;chr3:114343768..114343822,-!p1@ZBTB20!1.41!105.45!ZBTB20;;chr3:126076242..126076257,-!p1@KLF15!1.41!30.30!KLF15;;chr2:68592406..68592424,+!p1@PLEK!1.40!24.36!PLEK;;chr9:77112244..77112262,+!p1@RORB!1.39!26.44!RORB;;chr12:106976656..106976672,+!p4@RFX4!1.39!23.47!RFX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.68!ZBED1;;chr14:33408072..33408114,+!p2@NPAS3!1.34!24.65!NPAS3;;chr16:79634624..79634642,-!p1@MAF!1.33!78.42!MAF;;chr16:1031762..1031781,+!p1@SOX8!1.33!20.20!SOX8;;chr16:51185172..51185197,-!p1@SALL1!1.30!19.01!SALL1;;chr17:46682321..46682362,-!p1@HOXB6!1.30!19.01!HOXB6;;chr9:4300050..4300118,-!p1@GLIS3!1.29!117.33!GLIS3;;chr11:34654104..34654118,+!p5@EHF!1.29!18.71!EHF;;chr19:46800289..46800327,+!p2@HIF3A!1.29!18.42!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.28!23.76!ARNT2;;chr7:63505799..63505904,+!p1@ZNF727!1.28!18.12!ZNF727;;chr16:79634595..79634620,-!p2@MAF!1.26!30.89!MAF;;chr5:92918919..92918942,+!p1@NR2F1!1.25!73.07!NR2F1;;chr5:88178983..88179012,-!p1@MEF2C!1.24!125.06!MEF2C;;chr7:44143925..44143970,+!p1@AEBP1!1.23!349.62!AEBP1;;chr15:42749722..42749739,-!p2@ZFP106!1.23!28.52!ZFP106;;chr17:46692624..46692659,-!p3@HOXB8!1.22!15.74!HOXB8;;chr12:103351444..103351461,+!p1@ASCL1!1.22!15.45!ASCL1;;chr3:114343039..114343085,-!p8@ZBTB20!1.21!15.15!ZBTB20;;chr6:19837592..19837621,+!p1@ID4!1.20!90.60!ID4;;chr5:92918894..92918912,+!p2@NR2F1!1.20!48.72!NR2F1;;chr19:38085768..38085821,+!p1@ZNF540!1.20!21.98!ZNF540;;chr20:50159198..50159299,-!p1@NFATC2!1.20!21.39!NFATC2;;chr14:73360799..73360817,-!p1@DPF3!1.19!49.31!DPF3;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.60!SOX15;;chr17:46688334..46688385,-!p1@HOXB7!1.19!20.79!HOXB7;;chr17:46622440..46622477,-!p5@HOXB2!1.19!16.34!HOXB2;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.56!HOXD8;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.26!HOXB8;;chr7:27170359..27170381,-!p1@HOXA4!1.18!14.26!HOXA4;;chr2:178128250..178128293,-!p6@NFE2L2!1.17!34.46!NFE2L2;;chr3:147127142..147127168,+!p1@ZIC1!1.17!13.96!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!1.17!13.66!ZIC1;;chr12:26277798..26277809,-!p5@BHLHE41!1.17!13.66!BHLHE41;;chr19:21512202..21512225,-!p1@ZNF708!1.16!68.32!ZNF708;;chr19:21512144..21512191,-!p2@ZNF708!1.16!62.08!ZNF708;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!21.98!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!1.16!13.37!ZNF385A;;chr14:33403881..33403924,+!p1@NPAS3!1.16!13.37!NPAS3;;chr19:13135386..13135435,+!p4@NFIX!1.16!13.37!NFIX;;chr20:21494654..21494678,-!p2@NKX2-2!1.16!13.37!NKX2-2;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.06!AEBP1;;chr3:114819124..114819200,-!p3@ZBTB20!1.14!30.00!ZBTB20;;chr2:166326200..166326216,+!p1@CSRNP3!1.14!18.71!CSRNP3;;chr7:27196267..27196311,-!p1@HOXA7!1.14!12.77!HOXA7;;chr16:51185318..51185348,-!p2@SALL1!1.14!12.77!SALL1;;chr19:30863271..30863338,+!p1@ZNF536!1.13!12.48!ZNF536;;chr11:31832862..31832884,-!p2@PAX6!1.13!12.48!PAX6;;chr17:70117153..70117174,+!p1@SOX9!1.12!125.35!SOX9;;chr7:27142290..27142310,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002240
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%252c%2520adult%252c%2520donor10252.CNhs12227.10159-103A6.hg38.nobarcode.ctss.bed.gz
|id=FF:10159-103A6
|id=FF:10159-103A6
|is_a=EFO:0002091;;FF:0000002;;FF:0010159
|is_a=EFO:0002091;;FF:0000002;;FF:0010159
Line 46: Line 55:
|library_id=CNhs12227
|library_id=CNhs12227
|library_id_phase_based=2:CNhs12227
|library_id_phase_based=2:CNhs12227
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10159
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GGCTAC.10159
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10159
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GGCTAC.10159
|name=spinal cord, adult, donor10252
|name=spinal cord, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 68:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 83:
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|sample_age=76
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|sample_category=tissues
Line 90: Line 107:
|top_motifs=SOX2:3.51961377734;NFIX:3.4758119206;EP300:3.02634851096;GATA4:3.01587883798;SOX{8,9,10}:2.98062434898;SOX5:2.9698740497;BPTF:2.79660258958;RREB1:2.72893366293;HOX{A6,A7,B6,B7}:2.48595467957;TGIF1:2.43929579309;PRDM1:2.35588732447;MYFfamily:2.34057614065;RBPJ:2.3171773668;ZFP161:2.29192220121;NKX3-2:2.24804098935;POU6F1:2.11929301838;FOXQ1:2.07776107201;NR3C1:2.04611735393;FOXO1,3,4:2.02048789324;STAT1,3:2.00707325087;GTF2I:1.97839139299;ATF2:1.93876374692;CUX2:1.86761668168;POU5F1:1.86593251494;FOX{I1,J2}:1.84905825203;MED-1{core}:1.83244446081;PATZ1:1.82876508602;FOX{D1,D2}:1.81232252982;MZF1:1.81107629455;FOXD3:1.80038538266;OCT4_SOX2{dimer}:1.78623701329;NHLH1,2:1.76911477161;DBP:1.76187794892;FOXP3:1.75204625003;PRRX1,2:1.72111238654;FOX{F1,F2,J1}:1.71544885674;REST:1.70902122083;AR:1.66727081101;RFX2..5_RFXANK_RFXAP:1.63829610294;MAFB:1.59908517706;SOX17:1.59501559149;MTF1:1.58938694656;SREBF1,2:1.58709649549;PDX1:1.58004778484;MAZ:1.56249433613;MTE{core}:1.55087961664;ZBTB6:1.53905148483;HBP1_HMGB_SSRP1_UBTF:1.52436456225;MYBL2:1.49182897204;POU3F1..4:1.47562326467;SP1:1.46147781263;HIC1:1.46101904861;TFAP2B:1.45442486787;SMAD1..7,9:1.43254393805;PAX6:1.41297779771;STAT2,4,6:1.39557875743;NANOG:1.35758266339;VSX1,2:1.3135258071;FOXP1:1.3091168688;NRF1:1.18533816176;ZNF384:1.17000221757;LMO2:1.14223516764;TLX1..3_NFIC{dimer}:1.13298730942;RFX1:1.10936245172;TLX2:1.09432130219;EGR1..3:1.05439622509;GFI1B:1.04750190149;HSF1,2:1.02583699994;HMGA1,2:1.00868322728;ZNF143:1.00692461648;BREu{core}:1.00190994093;TFAP2{A,C}:0.983464264698;NKX6-1,2:0.972551139968;JUN:0.922065689818;ZNF423:0.898226435306;IRF7:0.889332274428;EBF1:0.8879205842;XBP1:0.88769440241;KLF4:0.851443422887;IKZF2:0.81940234957;PAX5:0.786897031148;ZIC1..3:0.752375798617;GFI1:0.737533420494;FOXM1:0.731967047457;GCM1,2:0.72417585725;HAND1,2:0.70004731651;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.678860871058;T:0.636296622234;NFATC1..3:0.627188244347;LEF1_TCF7_TCF7L1,2:0.60703317788;TOPORS:0.604102720592;RORA:0.565887186872;PBX1:0.514884403031;FOXA2:0.473755151315;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.468953706471;NFY{A,B,C}:0.465447439446;TFCP2:0.43561436386;CREB1:0.430145823651;SPZ1:0.390378895299;IRF1,2:0.347047622239;HOX{A4,D4}:0.317167742296;NFIL3:0.316988605421;NANOG{mouse}:0.294808894337;CDC5L:0.277343253843;CRX:0.264572509393;AHR_ARNT_ARNT2:0.242288684073;GZF1:0.178765377906;TFDP1:0.178056402099;NKX2-3_NKX2-5:0.153485536555;PAX2:0.153368024815;ZBTB16:0.141602009032;HMX1:0.11688123589;GTF2A1,2:0.0946816789792;ETS1,2:0.092189852519;PAX4:0.0865808224524;ATF4:0.0407169242555;PITX1..3:0.0363222059731;ONECUT1,2:0.0334799343947;NFE2L2:0.0334080155336;ARID5B:-0.0159989127662;DMAP1_NCOR{1,2}_SMARC:-0.0267357396129;SPIB:-0.0501004675525;ATF5_CREB3:-0.070515601013;ELF1,2,4:-0.0888628385763;CDX1,2,4:-0.0910478759756;HIF1A:-0.0923229955328;FOXN1:-0.0979928361201;SPI1:-0.0989715251889;MEF2{A,B,C,D}:-0.139362939913;NR6A1:-0.209917265447;POU1F1:-0.221041905354;CEBPA,B_DDIT3:-0.263132370629;NR1H4:-0.274679716644;HNF4A_NR2F1,2:-0.282955379263;HOXA9_MEIS1:-0.352113018806;TFAP4:-0.355305513405;ALX4:-0.356617001756;TP53:-0.357460785546;bHLH_family:-0.370309638923;ATF6:-0.37272666055;LHX3,4:-0.401411392077;TBP:-0.403515908792;ESRRA:-0.42815017982;YY1:-0.448505343046;MYOD1:-0.448951287948;NFE2:-0.450619828446;NFE2L1:-0.461652777027;XCPE1{core}:-0.468896389085;AIRE:-0.469516580349;GATA6:-0.469862652291;IKZF1:-0.517468346062;ALX1:-0.584045256695;NKX2-1,4:-0.590261002767;EVI1:-0.599918023563;ZNF238:-0.619915812125;NR5A1,2:-0.629323154689;SRF:-0.653008899201;NKX3-1:-0.670084700719;ZEB1:-0.678597456342;PAX3,7:-0.692721439702;TEAD1:-0.706572171804;PAX8:-0.738155915894;UFEwm:-0.743053585273;FOSL2:-0.7518082835;TEF:-0.7604765348;ELK1,4_GABP{A,B1}:-0.79323545887;E2F1..5:-0.807198876365;HNF1A:-0.836805179642;NKX2-2,8:-0.856022710173;TBX4,5:-0.86066695108;ADNP_IRX_SIX_ZHX:-0.889576506539;HLF:-0.897442432944;TAL1_TCF{3,4,12}:-0.902208171765;NFKB1_REL_RELA:-0.90235509989;RUNX1..3:-0.903890687332;FOS_FOS{B,L1}_JUN{B,D}:-0.912857929423;BACH2:-0.975763258744;MYB:-1.03223005107;SNAI1..3:-1.03586380635;RXRA_VDR{dimer}:-1.09044215169;RXR{A,B,G}:-1.10982115359;FOXL1:-1.14115555006;ZNF148:-1.26125208647;POU2F1..3:-1.37168229088;PPARG:-1.39363779122;PAX1,9:-1.49857631344;HES1:-1.49897773131;GLI1..3:-1.80926531221;EN1,2:-1.84948698378;ESR1:-1.97280158726;HOX{A5,B5}:-2.06737605874;STAT5{A,B}:-2.32246987152
|top_motifs=SOX2:3.51961377734;NFIX:3.4758119206;EP300:3.02634851096;GATA4:3.01587883798;SOX{8,9,10}:2.98062434898;SOX5:2.9698740497;BPTF:2.79660258958;RREB1:2.72893366293;HOX{A6,A7,B6,B7}:2.48595467957;TGIF1:2.43929579309;PRDM1:2.35588732447;MYFfamily:2.34057614065;RBPJ:2.3171773668;ZFP161:2.29192220121;NKX3-2:2.24804098935;POU6F1:2.11929301838;FOXQ1:2.07776107201;NR3C1:2.04611735393;FOXO1,3,4:2.02048789324;STAT1,3:2.00707325087;GTF2I:1.97839139299;ATF2:1.93876374692;CUX2:1.86761668168;POU5F1:1.86593251494;FOX{I1,J2}:1.84905825203;MED-1{core}:1.83244446081;PATZ1:1.82876508602;FOX{D1,D2}:1.81232252982;MZF1:1.81107629455;FOXD3:1.80038538266;OCT4_SOX2{dimer}:1.78623701329;NHLH1,2:1.76911477161;DBP:1.76187794892;FOXP3:1.75204625003;PRRX1,2:1.72111238654;FOX{F1,F2,J1}:1.71544885674;REST:1.70902122083;AR:1.66727081101;RFX2..5_RFXANK_RFXAP:1.63829610294;MAFB:1.59908517706;SOX17:1.59501559149;MTF1:1.58938694656;SREBF1,2:1.58709649549;PDX1:1.58004778484;MAZ:1.56249433613;MTE{core}:1.55087961664;ZBTB6:1.53905148483;HBP1_HMGB_SSRP1_UBTF:1.52436456225;MYBL2:1.49182897204;POU3F1..4:1.47562326467;SP1:1.46147781263;HIC1:1.46101904861;TFAP2B:1.45442486787;SMAD1..7,9:1.43254393805;PAX6:1.41297779771;STAT2,4,6:1.39557875743;NANOG:1.35758266339;VSX1,2:1.3135258071;FOXP1:1.3091168688;NRF1:1.18533816176;ZNF384:1.17000221757;LMO2:1.14223516764;TLX1..3_NFIC{dimer}:1.13298730942;RFX1:1.10936245172;TLX2:1.09432130219;EGR1..3:1.05439622509;GFI1B:1.04750190149;HSF1,2:1.02583699994;HMGA1,2:1.00868322728;ZNF143:1.00692461648;BREu{core}:1.00190994093;TFAP2{A,C}:0.983464264698;NKX6-1,2:0.972551139968;JUN:0.922065689818;ZNF423:0.898226435306;IRF7:0.889332274428;EBF1:0.8879205842;XBP1:0.88769440241;KLF4:0.851443422887;IKZF2:0.81940234957;PAX5:0.786897031148;ZIC1..3:0.752375798617;GFI1:0.737533420494;FOXM1:0.731967047457;GCM1,2:0.72417585725;HAND1,2:0.70004731651;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.678860871058;T:0.636296622234;NFATC1..3:0.627188244347;LEF1_TCF7_TCF7L1,2:0.60703317788;TOPORS:0.604102720592;RORA:0.565887186872;PBX1:0.514884403031;FOXA2:0.473755151315;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.468953706471;NFY{A,B,C}:0.465447439446;TFCP2:0.43561436386;CREB1:0.430145823651;SPZ1:0.390378895299;IRF1,2:0.347047622239;HOX{A4,D4}:0.317167742296;NFIL3:0.316988605421;NANOG{mouse}:0.294808894337;CDC5L:0.277343253843;CRX:0.264572509393;AHR_ARNT_ARNT2:0.242288684073;GZF1:0.178765377906;TFDP1:0.178056402099;NKX2-3_NKX2-5:0.153485536555;PAX2:0.153368024815;ZBTB16:0.141602009032;HMX1:0.11688123589;GTF2A1,2:0.0946816789792;ETS1,2:0.092189852519;PAX4:0.0865808224524;ATF4:0.0407169242555;PITX1..3:0.0363222059731;ONECUT1,2:0.0334799343947;NFE2L2:0.0334080155336;ARID5B:-0.0159989127662;DMAP1_NCOR{1,2}_SMARC:-0.0267357396129;SPIB:-0.0501004675525;ATF5_CREB3:-0.070515601013;ELF1,2,4:-0.0888628385763;CDX1,2,4:-0.0910478759756;HIF1A:-0.0923229955328;FOXN1:-0.0979928361201;SPI1:-0.0989715251889;MEF2{A,B,C,D}:-0.139362939913;NR6A1:-0.209917265447;POU1F1:-0.221041905354;CEBPA,B_DDIT3:-0.263132370629;NR1H4:-0.274679716644;HNF4A_NR2F1,2:-0.282955379263;HOXA9_MEIS1:-0.352113018806;TFAP4:-0.355305513405;ALX4:-0.356617001756;TP53:-0.357460785546;bHLH_family:-0.370309638923;ATF6:-0.37272666055;LHX3,4:-0.401411392077;TBP:-0.403515908792;ESRRA:-0.42815017982;YY1:-0.448505343046;MYOD1:-0.448951287948;NFE2:-0.450619828446;NFE2L1:-0.461652777027;XCPE1{core}:-0.468896389085;AIRE:-0.469516580349;GATA6:-0.469862652291;IKZF1:-0.517468346062;ALX1:-0.584045256695;NKX2-1,4:-0.590261002767;EVI1:-0.599918023563;ZNF238:-0.619915812125;NR5A1,2:-0.629323154689;SRF:-0.653008899201;NKX3-1:-0.670084700719;ZEB1:-0.678597456342;PAX3,7:-0.692721439702;TEAD1:-0.706572171804;PAX8:-0.738155915894;UFEwm:-0.743053585273;FOSL2:-0.7518082835;TEF:-0.7604765348;ELK1,4_GABP{A,B1}:-0.79323545887;E2F1..5:-0.807198876365;HNF1A:-0.836805179642;NKX2-2,8:-0.856022710173;TBX4,5:-0.86066695108;ADNP_IRX_SIX_ZHX:-0.889576506539;HLF:-0.897442432944;TAL1_TCF{3,4,12}:-0.902208171765;NFKB1_REL_RELA:-0.90235509989;RUNX1..3:-0.903890687332;FOS_FOS{B,L1}_JUN{B,D}:-0.912857929423;BACH2:-0.975763258744;MYB:-1.03223005107;SNAI1..3:-1.03586380635;RXRA_VDR{dimer}:-1.09044215169;RXR{A,B,G}:-1.10982115359;FOXL1:-1.14115555006;ZNF148:-1.26125208647;POU2F1..3:-1.37168229088;PPARG:-1.39363779122;PAX1,9:-1.49857631344;HES1:-1.49897773131;GLI1..3:-1.80926531221;EN1,2:-1.84948698378;ESR1:-1.97280158726;HOX{A5,B5}:-2.06737605874;STAT5{A,B}:-2.32246987152
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10159-103A6;search_select_hide=table117:FF:10159-103A6
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:spinal cord, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12227
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005672
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12227 CAGE DRX008728 DRR009600
Accession ID Hg19

Library idBAMCTSS
CNhs12227 DRZ001025 DRZ002410
Accession ID Hg38

Library idBAMCTSS
CNhs12227 DRZ012375 DRZ013760
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10030downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005672
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.GGCTAC sRNA-Seq DRX037339 DRR041705
Accession ID Hg19

Library idBAMCTSS
SRhi10003.GGCTAC DRZ007347


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.113
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.739
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.249
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.113
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.203
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.113
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.12
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.00742
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.713
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0431
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.276
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.395
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.277
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.123
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.233
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.762
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.352
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.113
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.113
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.203
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.113
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.203
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.113
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0614
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.599
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.113
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.158
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.505
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.446
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.444
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.277
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.528
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.158
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.203
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.113
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.63
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.148
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.277
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.113
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12227

Jaspar motifP-value
MA0002.20.0754
MA0003.10.22
MA0004.10.461
MA0006.10.399
MA0007.10.507
MA0009.10.299
MA0014.10.787
MA0017.10.00857
MA0018.20.332
MA0019.10.616
MA0024.10.64
MA0025.10.676
MA0027.10.942
MA0028.10.11
MA0029.10.0276
MA0030.10.0214
MA0031.10.00712
MA0035.20.00611
MA0038.10.125
MA0039.20.359
MA0040.10.383
MA0041.10.549
MA0042.10.774
MA0043.10.887
MA0046.10.00343
MA0047.20.789
MA0048.10.126
MA0050.10.656
MA0051.10.592
MA0052.10.556
MA0055.10.00181
MA0057.10.751
MA0058.10.732
MA0059.10.133
MA0060.10.117
MA0061.10.00604
MA0062.20.0238
MA0065.29.20012e-4
MA0066.10.00583
MA0067.10.581
MA0068.10.454
MA0069.10.996
MA0070.10.238
MA0071.10.0255
MA0072.10.752
MA0073.10.68
MA0074.10.135
MA0076.10.267
MA0077.10.00665
MA0078.10.969
MA0079.20.935
MA0080.20.00674
MA0081.10.0893
MA0083.10.153
MA0084.10.222
MA0087.10.0982
MA0088.10.332
MA0090.10.298
MA0091.10.439
MA0092.10.232
MA0093.10.585
MA0099.28.79666e-18
MA0100.10.701
MA0101.10.0071
MA0102.20.99
MA0103.10.00666
MA0104.20.46
MA0105.17.56673e-5
MA0106.10.0204
MA0107.10.005
MA0108.20.862
MA0111.10.735
MA0112.26.34229e-4
MA0113.10.806
MA0114.10.0135
MA0115.10.873
MA0116.10.00281
MA0117.10.984
MA0119.10.149
MA0122.10.419
MA0124.10.202
MA0125.10.147
MA0131.10.933
MA0135.10.027
MA0136.14.36573e-4
MA0137.20.00305
MA0138.20.7
MA0139.10.576
MA0140.10.0203
MA0141.10.00109
MA0142.10.235
MA0143.10.0145
MA0144.10.815
MA0145.10.474
MA0146.10.0384
MA0147.10.204
MA0148.10.543
MA0149.10.0259
MA0150.10.00158
MA0152.10.418
MA0153.10.637
MA0154.10.0455
MA0155.10.599
MA0156.10.00329
MA0157.10.17
MA0159.10.0109
MA0160.10.0325
MA0162.10.12
MA0163.15.67224e-8
MA0164.10.396
MA0258.10.00883
MA0259.10.708



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12227

Novel motifP-value
10.0709
100.0663
1000.348
1010.471
1020.842
1030.0297
1040.0667
1050.67
1060.0191
1070.131
1080.547
1090.001
110.0136
1100.0761
1110.105
1120.333
1130.23
1140.0913
1150.721
1160.0729
1170.0153
1180.124
1190.158
120.563
1200.228
1210.893
1220.782
1230.856
1240.317
1250.566
1260.187
1270.451
1280.164
1290.43
130.0102
1300.556
1310.00291
1320.523
1330.0786
1340.436
1350.0592
1360.00116
1370.823
1380.906
1390.14
140.96
1400.393
1410.426
1420.523
1430.0509
1440.969
1450.354
1460.682
1470.675
1480.35
1490.0897
150.0525
1500.0859
1510.665
1520.0658
1530.959
1540.505
1550.621
1560.164
1570.364
1580.0681
1590.00573
160.0317
1600.156
1610.164
1620.969
1630.821
1640.0136
1650.481
1660.934
1670.964
1680.924
1690.0214
170.0497
180.0286
190.377
20.961
200.23
210.0282
220.34
230.565
240.129
250.796
260.00395
270.626
280.872
290.00447
30.0623
300.911
310.856
320.00604
330.0783
340.867
350.485
360.316
370.029
380.561
390.284
40.855
400.109
410.316
420.313
430.185
440.0212
450.763
460.0285
470.0683
480.0551
490.353
50.995
500.653
510.285
520.731
530.557
540.548
550.923
560.601
570.289
580.467
590.0661
60.971
600.174
610.127
620.251
630.285
640.121
650.309
660.23
670.532
680.44
690.344
70.201
700.0125
710.00915
720.382
730.0365
740.594
750.0201
760.182
770.112
780.0039
790.5
80.0274
800.929
810.629
820.571
830.245
840.421
850.473
860.183
871.02689e-4
880.677
890.161
90.63
900.212
910.452
920.65
930.988
940.141
950.00606
960.543
970.913
980.208
990.37



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12227


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010159 (human spinal cord - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

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