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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005643
|DRA_sample_Accession=CAGE@SAMD00005643
|accession_numbers=CAGE;DRX008434;DRR009306;DRZ000731;DRZ002116
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005643
|accession_numbers=CAGE;DRX008434;DRR009306;DRZ000731;DRZ002116;DRZ012081;DRZ013466
|accession_numbers_RNASeq=sRNA-Seq;DRX037217;DRR041583;DRZ007225
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
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|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.99!96.19!PAX8;;chr6:134210243..134210257,+!p1@TCF21!1.83!67.19!TCF21;;chr17:36105042..36105060,-!p1@HNF1B!1.68!46.60!HNF1B;;chr11:61520075..61520136,+!p1@C11orf9!1.58!76.41!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.58!37.12!ELF3;;chr7:27205136..27205164,-!p1@HOXA9!1.57!36.31!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.04!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.57!35.76!HOXB9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.56!35.49!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.56!34.95!WT1;;chr16:86600426..86600441,+!p1@FOXC2!1.55!82.91!FOXC2;;chr7:27196217..27196246,-!p2@HOXA7!1.55!34.14!HOXA7;;chr1:201979703..201979721,+!p2@ELF3!1.48!28.99!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.40!23.84!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.22!HOXC9;;chr12:54379029..54379057,+!p2@HOXC10!1.36!21.95!HOXC10;;chr12:54378923..54378966,+!p1@HOXC10!1.33!20.59!HOXC10;;chr7:27224842..27224872,-!p1@HOXA11!1.33!20.59!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.78!HOXA11;;chr5:72744594..72744609,-!p1@FOXD1!1.31!86.16!FOXD1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.27!17.61!LHX1;;chr7:27192185..27192209,-!p1@HOXA3!1.26!17.07!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.80!SIX2;;chr6:34204921..34204939,+!p3@HMGA1!1.24!485.27!HMGA1;;chr7:27213893..27213954,-!p1@HOXA10!1.22!15.71!HOXA10;;chr7:27153454..27153469,-!p2@HOXA3!1.21!15.17!HOXA3;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.23!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!1.11!17.34!HOXB7;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.36!FOXF1;;chr7:27196196..27196210,-!p5@HOXA7!1.10!11.65!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.10!11.65!HOXA9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.65!GLIS1;;chr2:176972000..176972025,+!p4@HOXD11!1.06!10.57!HOXD11;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.91!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!1.03!18.70!NR2F2;;chr10:102505327..102505344,+!p1@PAX2!1.02!9.48!PAX2;;chr2:176969097..176969109,+!p3@HOXD11!1.02!9.48!HOXD11;;chr2:176969179..176969226,+!p2@HOXD11!1.02!9.48!HOXD11;;chr2:121493425..121493474,+!p1@GLI2!1.00!20.05!GLI2;;chr10:102505493..102505546,+!p2@PAX2!1.00!8.94!PAX2;;chr15:96874012..96874042,+!p2@NR2F2!0.99!79.93!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.46!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.82!FOXD1;;chr11:32457413..32457431,-!p2@WT1!0.96!8.13!WT1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.13!HOXB8;;chr2:45236579..45236596,-!p2@SIX2!0.96!8.13!SIX2;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.57!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.65!ZFP64;;chr19:45260775..45260838,+!p5@BCL3!0.92!9.75!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!0.91!835.06!HMGA1;;chr17:46622070..46622109,-!p1@HOXB2!0.91!16.53!HOXB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.04!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr15:96874244..96874259,+!p5@NR2F2!0.90!17.34!NR2F2;;chr19:49864746..49864780,-!p2@TEAD2!0.90!9.75!TEAD2;;chr2:176973498..176973524,+!p1@HOXD10!0.89!6.77!HOXD10;;chr2:5832508..5832524,+!p1@SOX11!0.89!6.77!SOX11;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.77!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.49!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.28!SIX1;;chr1:151032922..151032951,+!p2@MLLT11!0.88!11.11!MLLT11;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.86!FOXD1;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.50!FOXC2;;chr15:96869255..96869291,+!p6@NR2F2!0.87!11.92!NR2F2;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.23!HOXD8;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.61!SALL2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.40!DNMT3A;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.26!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.84!5.96!HOXC8;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.96!SALL1;;chr15:96873861..96873872,+!p9@NR2F2!0.83!12.46!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.13!HOXB7;;chr10:102495147..102495159,+!p4@PAX2!0.83!5.69!PAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.94!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.50!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.42!HOXA10;;chr1:151032860..151032918,+!p1@MLLT11!0.80!68.01!MLLT11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!57.71!GLIS2;;chr1:209979467..209979494,-!p1@IRF6!0.80!5.96!IRF6;;chr7:44143925..44143970,+!p1@AEBP1!0.79!126.26!AEBP1;;chr12:3069037..3069119,+!p2@TEAD4!0.79!18.97!TEAD4;;chr10:102505954..102505973,+!p3@PAX2!0.79!5.15!PAX2;;chr7:27153428..27153440,-!p3@HOXA3!0.79!5.15!HOXA3;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.23!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.88!HOXA5;;chr2:176971685..176971700,+!p6@HOXD11!0.77!4.88!HOXD11;;chr3:111314186..111314204,-!p1@ZBED2!0.77!4.88!ZBED2;;chr15:96869165..96869183,+!p20@NR2F2!0.77!4.88!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.26!GATA6;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.75!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.42!BNC1;;chr2:9601239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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1001318;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.ctss.bed.gz
|id=FF:11518-119H6
|id=FF:11518-119H6
|is_a=EFO:0002091;;FF:0000154
|is_a=EFO:0002091;;FF:0000154
Line 46: Line 54:
|library_id=CNhs11333
|library_id=CNhs11333
|library_id_phase_based=2:CNhs11333
|library_id_phase_based=2:CNhs11333
|name="Renal Mesangial Cells, donor1"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11518
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CCGTCC.11518
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11518
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CCGTCC.11518
|name=Renal Mesangial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11333,LSID768,release014,COMPLETED"
|profile_hcage=CNhs11333,LSID768,release014,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq="SRhi10013,,,"
|profile_srnaseq=SRhi10013,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
|rna_tube_id=119H6
|rna_tube_id=119H6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10013.CCGTCC
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_category=primary cells
Line 72: Line 88:
|sample_cell_line=
|sample_cell_line=
|sample_cell_lot=lot:1070
|sample_cell_lot=lot:1070
|sample_cell_type="mesangial cell, intraglomerular"
|sample_cell_type=mesangial cell, intraglomerular
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_company=Sciencell/3H
Line 90: Line 106:
|top_motifs=EBF1:1.92882642673;XCPE1{core}:1.86952910845;ZNF148:1.58249300774;GZF1:1.51910629584;GTF2A1,2:1.51674354822;RXR{A,B,G}:1.36748330259;SP1:1.227422978;TFCP2:1.16241121642;ZNF423:1.13631617133;LHX3,4:1.12044555299;SPZ1:1.10871251289;HOX{A5,B5}:1.07776650598;ESRRA:1.02274468863;PBX1:1.01154320079;HNF1A:0.994946875804;LEF1_TCF7_TCF7L1,2:0.952690205341;TFAP2{A,C}:0.942742852947;ESR1:0.931257037541;GLI1..3:0.873689109684;TEAD1:0.801401961796;RXRA_VDR{dimer}:0.790289186931;ZIC1..3:0.784787027998;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.76375716446;MYOD1:0.714263075146;HIC1:0.699884078395;NKX2-3_NKX2-5:0.684583462745;RREB1:0.674271234121;SRF:0.635768734776;POU2F1..3:0.616311825793;SOX{8,9,10}:0.612595852273;NR6A1:0.600766711878;bHLH_family:0.599618498634;HAND1,2:0.591512589107;TLX1..3_NFIC{dimer}:0.587706570654;PAX5:0.574818781158;EP300:0.574410814455;ADNP_IRX_SIX_ZHX:0.566992178782;SNAI1..3:0.558795294221;TFAP2B:0.530567344096;NR3C1:0.515152554336;LMO2:0.514789984001;ONECUT1,2:0.47621532168;PATZ1:0.469415709181;TP53:0.466347966967;ZBTB6:0.464296881953;EN1,2:0.442367411577;HNF4A_NR2F1,2:0.429786875942;STAT5{A,B}:0.416051674309;TAL1_TCF{3,4,12}:0.387551840531;NFY{A,B,C}:0.371727122363;IKZF1:0.362463916884;NR1H4:0.351559766581;GTF2I:0.341212199544;GFI1:0.334256984701;MTF1:0.331614066678;NR5A1,2:0.320742565381;GFI1B:0.315871828523;ZEB1:0.307230702345;MAZ:0.28833949386;SOX17:0.283112634123;PAX8:0.277911124233;JUN:0.276524772217;PPARG:0.273001636445;TFAP4:0.271604511196;PRRX1,2:0.267684419772;CRX:0.239078131307;BACH2:0.236273027093;KLF4:0.235543565838;SOX2:0.225863821417;TBX4,5:0.222148009153;VSX1,2:0.197830315839;MZF1:0.192565457645;TBP:0.172222989906;FOSL2:0.151186384052;NFE2L2:0.131782817785;DBP:0.118959277631;HES1:0.111773427789;RORA:0.110063148563;SMAD1..7,9:0.0991806106616;EGR1..3:0.085310437525;MTE{core}:0.0841737173972;NFE2:0.0513541706937;RFX1:0.043857934845;ZNF143:0.0433184961812;FOS_FOS{B,L1}_JUN{B,D}:0.0396484166729;FOXQ1:0.0371552741927;NHLH1,2:0.0233643597351;AR:0.0150745991291;REST:0.00902386489852;ZNF384:0.00217770932933;E2F1..5:-0.00612400534873;PAX1,9:-0.00943470272883;HOX{A6,A7,B6,B7}:-0.021167852498;POU6F1:-0.0252788271388;NFE2L1:-0.0685227972982;MEF2{A,B,C,D}:-0.0882614854101;ZNF238:-0.108540567772;MED-1{core}:-0.121794196232;ARID5B:-0.122643251332;UFEwm:-0.124192674853;NFKB1_REL_RELA:-0.125747843044;NANOG:-0.142772863246;HSF1,2:-0.178718530169;RUNX1..3:-0.181368831953;GCM1,2:-0.1925992936;GATA6:-0.199357972601;CUX2:-0.215100143009;MYBL2:-0.228400554354;HLF:-0.244072775575;ATF2:-0.257023933268;PITX1..3:-0.284942371791;FOXM1:-0.287875693112;PRDM1:-0.291496310603;STAT2,4,6:-0.293118322273;YY1:-0.298185516245;NFATC1..3:-0.299965912129;ATF6:-0.300807474267;NKX6-1,2:-0.302346445336;PDX1:-0.303521703659;TFDP1:-0.319224427996;TOPORS:-0.327376345216;FOX{I1,J2}:-0.328501083211;T:-0.330715740206;ALX4:-0.331325588539;FOX{F1,F2,J1}:-0.335466397598;FOXL1:-0.341533448885;ETS1,2:-0.363833087544;OCT4_SOX2{dimer}:-0.370395792688;NRF1:-0.374650756068;HOX{A4,D4}:-0.408946752194;CEBPA,B_DDIT3:-0.412102864157;POU5F1:-0.416263485046;CDC5L:-0.427134571728;ZFP161:-0.452201166698;HMX1:-0.474165192098;NANOG{mouse}:-0.475008423963;TEF:-0.491554930549;NKX2-2,8:-0.511849965141;POU3F1..4:-0.521100670677;XBP1:-0.522028357695;ELK1,4_GABP{A,B1}:-0.526310353273;HOXA9_MEIS1:-0.551146253101;AIRE:-0.558018494825;SPIB:-0.595172647063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.603993926399;NFIL3:-0.612349357903;NKX3-1:-0.625760634497;MYFfamily:-0.626249865249;MYB:-0.642413016076;POU1F1:-0.663910117906;PAX2:-0.666424967741;SPI1:-0.669829250923;AHR_ARNT_ARNT2:-0.682770083297;STAT1,3:-0.686736495832;PAX3,7:-0.688608738195;CDX1,2,4:-0.689255430604;SOX5:-0.700223391585;BREu{core}:-0.707705252341;FOX{D1,D2}:-0.718697338522;FOXD3:-0.730452888731;SREBF1,2:-0.736341449384;RFX2..5_RFXANK_RFXAP:-0.748308391583;DMAP1_NCOR{1,2}_SMARC:-0.766226724359;TGIF1:-0.795427102137;NFIX:-0.810483182317;MAFB:-0.818193264431;FOXP3:-0.81873729016;HBP1_HMGB_SSRP1_UBTF:-0.826051103107;ELF1,2,4:-0.828583910391;EVI1:-0.866117363405;IRF1,2:-0.872315295048;PAX6:-0.908407263669;FOXA2:-0.910577470856;RBPJ:-0.930329047438;FOXP1:-0.967422548951;IRF7:-0.972339560983;ATF4:-0.977463975503;GATA4:-0.981408993464;ALX1:-0.983127980522;NKX3-2:-1.02122966827;CREB1:-1.05878850232;PAX4:-1.0986097312;HIF1A:-1.10079174098;ATF5_CREB3:-1.14505673677;BPTF:-1.24088369708;FOXO1,3,4:-1.26636132798;TLX2:-1.37026970543;ZBTB16:-1.49107380972;NKX2-1,4:-1.49792239482;IKZF2:-1.57608655528;HMGA1,2:-1.58876525888;FOXN1:-1.59771232844
|top_motifs=EBF1:1.92882642673;XCPE1{core}:1.86952910845;ZNF148:1.58249300774;GZF1:1.51910629584;GTF2A1,2:1.51674354822;RXR{A,B,G}:1.36748330259;SP1:1.227422978;TFCP2:1.16241121642;ZNF423:1.13631617133;LHX3,4:1.12044555299;SPZ1:1.10871251289;HOX{A5,B5}:1.07776650598;ESRRA:1.02274468863;PBX1:1.01154320079;HNF1A:0.994946875804;LEF1_TCF7_TCF7L1,2:0.952690205341;TFAP2{A,C}:0.942742852947;ESR1:0.931257037541;GLI1..3:0.873689109684;TEAD1:0.801401961796;RXRA_VDR{dimer}:0.790289186931;ZIC1..3:0.784787027998;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.76375716446;MYOD1:0.714263075146;HIC1:0.699884078395;NKX2-3_NKX2-5:0.684583462745;RREB1:0.674271234121;SRF:0.635768734776;POU2F1..3:0.616311825793;SOX{8,9,10}:0.612595852273;NR6A1:0.600766711878;bHLH_family:0.599618498634;HAND1,2:0.591512589107;TLX1..3_NFIC{dimer}:0.587706570654;PAX5:0.574818781158;EP300:0.574410814455;ADNP_IRX_SIX_ZHX:0.566992178782;SNAI1..3:0.558795294221;TFAP2B:0.530567344096;NR3C1:0.515152554336;LMO2:0.514789984001;ONECUT1,2:0.47621532168;PATZ1:0.469415709181;TP53:0.466347966967;ZBTB6:0.464296881953;EN1,2:0.442367411577;HNF4A_NR2F1,2:0.429786875942;STAT5{A,B}:0.416051674309;TAL1_TCF{3,4,12}:0.387551840531;NFY{A,B,C}:0.371727122363;IKZF1:0.362463916884;NR1H4:0.351559766581;GTF2I:0.341212199544;GFI1:0.334256984701;MTF1:0.331614066678;NR5A1,2:0.320742565381;GFI1B:0.315871828523;ZEB1:0.307230702345;MAZ:0.28833949386;SOX17:0.283112634123;PAX8:0.277911124233;JUN:0.276524772217;PPARG:0.273001636445;TFAP4:0.271604511196;PRRX1,2:0.267684419772;CRX:0.239078131307;BACH2:0.236273027093;KLF4:0.235543565838;SOX2:0.225863821417;TBX4,5:0.222148009153;VSX1,2:0.197830315839;MZF1:0.192565457645;TBP:0.172222989906;FOSL2:0.151186384052;NFE2L2:0.131782817785;DBP:0.118959277631;HES1:0.111773427789;RORA:0.110063148563;SMAD1..7,9:0.0991806106616;EGR1..3:0.085310437525;MTE{core}:0.0841737173972;NFE2:0.0513541706937;RFX1:0.043857934845;ZNF143:0.0433184961812;FOS_FOS{B,L1}_JUN{B,D}:0.0396484166729;FOXQ1:0.0371552741927;NHLH1,2:0.0233643597351;AR:0.0150745991291;REST:0.00902386489852;ZNF384:0.00217770932933;E2F1..5:-0.00612400534873;PAX1,9:-0.00943470272883;HOX{A6,A7,B6,B7}:-0.021167852498;POU6F1:-0.0252788271388;NFE2L1:-0.0685227972982;MEF2{A,B,C,D}:-0.0882614854101;ZNF238:-0.108540567772;MED-1{core}:-0.121794196232;ARID5B:-0.122643251332;UFEwm:-0.124192674853;NFKB1_REL_RELA:-0.125747843044;NANOG:-0.142772863246;HSF1,2:-0.178718530169;RUNX1..3:-0.181368831953;GCM1,2:-0.1925992936;GATA6:-0.199357972601;CUX2:-0.215100143009;MYBL2:-0.228400554354;HLF:-0.244072775575;ATF2:-0.257023933268;PITX1..3:-0.284942371791;FOXM1:-0.287875693112;PRDM1:-0.291496310603;STAT2,4,6:-0.293118322273;YY1:-0.298185516245;NFATC1..3:-0.299965912129;ATF6:-0.300807474267;NKX6-1,2:-0.302346445336;PDX1:-0.303521703659;TFDP1:-0.319224427996;TOPORS:-0.327376345216;FOX{I1,J2}:-0.328501083211;T:-0.330715740206;ALX4:-0.331325588539;FOX{F1,F2,J1}:-0.335466397598;FOXL1:-0.341533448885;ETS1,2:-0.363833087544;OCT4_SOX2{dimer}:-0.370395792688;NRF1:-0.374650756068;HOX{A4,D4}:-0.408946752194;CEBPA,B_DDIT3:-0.412102864157;POU5F1:-0.416263485046;CDC5L:-0.427134571728;ZFP161:-0.452201166698;HMX1:-0.474165192098;NANOG{mouse}:-0.475008423963;TEF:-0.491554930549;NKX2-2,8:-0.511849965141;POU3F1..4:-0.521100670677;XBP1:-0.522028357695;ELK1,4_GABP{A,B1}:-0.526310353273;HOXA9_MEIS1:-0.551146253101;AIRE:-0.558018494825;SPIB:-0.595172647063;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.603993926399;NFIL3:-0.612349357903;NKX3-1:-0.625760634497;MYFfamily:-0.626249865249;MYB:-0.642413016076;POU1F1:-0.663910117906;PAX2:-0.666424967741;SPI1:-0.669829250923;AHR_ARNT_ARNT2:-0.682770083297;STAT1,3:-0.686736495832;PAX3,7:-0.688608738195;CDX1,2,4:-0.689255430604;SOX5:-0.700223391585;BREu{core}:-0.707705252341;FOX{D1,D2}:-0.718697338522;FOXD3:-0.730452888731;SREBF1,2:-0.736341449384;RFX2..5_RFXANK_RFXAP:-0.748308391583;DMAP1_NCOR{1,2}_SMARC:-0.766226724359;TGIF1:-0.795427102137;NFIX:-0.810483182317;MAFB:-0.818193264431;FOXP3:-0.81873729016;HBP1_HMGB_SSRP1_UBTF:-0.826051103107;ELF1,2,4:-0.828583910391;EVI1:-0.866117363405;IRF1,2:-0.872315295048;PAX6:-0.908407263669;FOXA2:-0.910577470856;RBPJ:-0.930329047438;FOXP1:-0.967422548951;IRF7:-0.972339560983;ATF4:-0.977463975503;GATA4:-0.981408993464;ALX1:-0.983127980522;NKX3-2:-1.02122966827;CREB1:-1.05878850232;PAX4:-1.0986097312;HIF1A:-1.10079174098;ATF5_CREB3:-1.14505673677;BPTF:-1.24088369708;FOXO1,3,4:-1.26636132798;TLX2:-1.37026970543;ZBTB16:-1.49107380972;NKX2-1,4:-1.49792239482;IKZF2:-1.57608655528;HMGA1,2:-1.58876525888;FOXN1:-1.59771232844
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11518-119H6;search_select_hide=table117:FF:11518-119H6
}}
}}

Latest revision as of 18:06, 4 June 2020

Name:Renal Mesangial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11333
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typemesangial cell, intraglomerular
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005643
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11333 CAGE DRX008434 DRR009306
Accession ID Hg19

Library idBAMCTSS
CNhs11333 DRZ000731 DRZ002116
Accession ID Hg38

Library idBAMCTSS
CNhs11333 DRZ012081 DRZ013466
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005643
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10013.CCGTCC sRNA-Seq DRX037217 DRR041583
Accession ID Hg19

Library idBAMCTSS
SRhi10013.CCGTCC DRZ007225


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.125
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.09
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.104
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0621
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.391
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0394
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0943
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.104
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.283
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.366
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.00171
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.372
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.104
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.258
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11333

Jaspar motifP-value
MA0002.20.771
MA0003.10.34
MA0004.10.745
MA0006.10.149
MA0007.10.155
MA0009.10.587
MA0014.10.85
MA0017.10.26
MA0018.20.144
MA0019.10.0936
MA0024.10.539
MA0025.10.827
MA0027.10.468
MA0028.10.102
MA0029.10.377
MA0030.10.343
MA0031.10.127
MA0035.20.0757
MA0038.12.80432e-5
MA0039.20.0853
MA0040.10.293
MA0041.10.257
MA0042.10.761
MA0043.10.0373
MA0046.13.31761e-16
MA0047.20.102
MA0048.10.86
MA0050.17.90881e-6
MA0051.14.09739e-4
MA0052.10.329
MA0055.10.0682
MA0057.10.136
MA0058.10.922
MA0059.10.833
MA0060.14.17789e-6
MA0061.10.898
MA0062.20.00266
MA0065.20.145
MA0066.10.85
MA0067.10.0108
MA0068.10.757
MA0069.10.94
MA0070.10.00327
MA0071.10.668
MA0072.10.97
MA0073.10.823
MA0074.10.261
MA0076.10.00729
MA0077.10.0622
MA0078.10.881
MA0079.20.495
MA0080.21.95336e-6
MA0081.10.0166
MA0083.11.99763e-6
MA0084.10.292
MA0087.10.652
MA0088.10.94
MA0090.10.00115
MA0091.10.671
MA0092.10.997
MA0093.10.811
MA0099.20.00123
MA0100.10.167
MA0101.10.576
MA0102.21.34639e-4
MA0103.10.0274
MA0104.20.288
MA0105.10.572
MA0106.10.178
MA0107.10.952
MA0108.25.98326e-7
MA0111.10.133
MA0112.20.28
MA0113.10.201
MA0114.10.145
MA0115.10.474
MA0116.10.477
MA0117.10.124
MA0119.10.765
MA0122.10.949
MA0124.10.582
MA0125.10.234
MA0131.10.274
MA0135.10.125
MA0136.19.80559e-6
MA0137.20.527
MA0138.20.872
MA0139.10.76
MA0140.10.316
MA0141.10.834
MA0142.10.225
MA0143.10.415
MA0144.10.94
MA0145.10.115
MA0146.10.063
MA0147.10.432
MA0148.10.646
MA0149.10.626
MA0150.10.331
MA0152.10.27
MA0153.11.80008e-8
MA0154.10.611
MA0155.10.0399
MA0156.12.86824e-4
MA0157.10.203
MA0159.10.908
MA0160.10.67
MA0162.10.195
MA0163.10.696
MA0164.10.483
MA0258.10.766
MA0259.10.231



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11333

Novel motifP-value
10.0985
100.0239
1000.476
1010.16
1020.537
1030.531
1040.376
1050.161
1060.304
1070.0544
1080.567
1090.473
110.534
1100.565
1110.435
1120.319
1130.85
1140.15
1150.805
1160.615
1170.353
1180.807
1190.997
120.632
1200.81
1210.684
1220.12
1235.66446e-4
1240.486
1250.268
1260.766
1270.376
1280.813
1290.306
130.917
1300.279
1310.378
1320.0757
1330.34
1340.761
1350.964
1360.892
1370.0381
1380.175
1390.557
140.625
1400.69
1410.0433
1420.603
1430.345
1440.865
1450.995
1460.0288
1470.581
1480.073
1490.532
150.284
1500.373
1510.789
1520.0973
1530.103
1540.151
1550.205
1560.339
1570.688
1580.199
1590.967
160.739
1600.116
1610.574
1620.193
1630.69
1640.141
1650.13
1660.877
1670.0595
1680.778
1690.141
170.592
180.859
190.43
20.239
200.613
210.766
220.199
230.688
240.935
250.402
260.401
270.297
280.401
290.397
30.534
300.0319
310.449
320.0233
330.574
340.244
350.0746
360.712
370.541
380.991
390.172
40.421
400.028
410.265
420.577
430.879
440.909
450.164
460.754
470.97
480.687
490.496
50.329
500.351
510.655
520.491
530.341
540.569
550.561
560.272
570.533
580.292
590.0692
60.219
600.933
610.434
620.238
630.632
640.616
650.146
660.119
670.488
680.233
690.168
70.561
700.853
710.509
720.335
730.1
740.261
750.36
760.0254
770.0613
780.636
790.732
80.427
800.801
810.196
820.605
830.803
840.444
850.531
860.518
870.365
880.501
890.309
90.492
900.00265
910.576
920.656
930.455
940.438
950.766
960.557
970.72
980.626
991.58116e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11333


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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