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{{f5samples
{{f5samples
|id=FF:10033-101E6
|DRA_sample_Accession=CAGE@SAMD00004952
|name=pons, adult, pool1
|accession_numbers=CAGE;DRX008711;DRR009583;DRZ001008;DRZ002393;DRZ012358;DRZ013743
|sample_id=10033
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000988,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002298,UBERON:0002028
|rna_tube_id=101E6
|rna_box=101
|rna_position=E6
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number=8101345A
|rna_catalog_number=Cat:636572
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=18-54 years old adult
|sample_tissue=pons
|sample_donor(cell lot)=20 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=50
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs10640,LSID658,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0000988,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001895,UBERON:0002028,UBERON:0002050,UBERON:0002298,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002680,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0004121,UBERON:0004732,UBERON:0004733,UBERON:0005068,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010033
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.62!418.63!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.36!229.94!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.34!217.37!OLIG1;;chr22:38380543..38380569,-!p1@SOX10!2.28!191.67!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.15!287.51!C11orf9;;chr8:53322304..53322340,-!p1@ST18!1.98!93.59!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.93!84.08!OLIG2;;chr1:216896752..216896778,-!p1@ESRRG!1.92!81.50!ESRRG;;chr9:114287433..114287513,+!p1@ZNF483!1.91!202.48!ZNF483;;chr4:57547454..57547469,-!p1@HOPX!1.85!70.01!HOPX;;chr2:145277882..145277967,-!p3@ZEB2!1.83!112.22!ZEB2;;chr8:40755333..40755352,-!p1@ZMAT4!1.83!67.15!ZMAT4;;chr12:26277817..26277863,-!p2@BHLHE41!1.74!72.66!BHLHE41;;chr17:37764128..37764258,-!p1@NEUROD2!1.73!52.27!NEUROD2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.52!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.62!46.56!HLF;;chr5:2751785..2751808,-!p2@IRX2!1.59!37.79!IRX2;;chr21:34442540..34442560,+!p2@OLIG1!1.57!36.09!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.55!44.25!ZNF488;;chr8:53322347..53322378,-!p2@ST18!1.54!34.05!ST18;;chr19:57352109..57352153,-!p2@ZIM2!1.51!31.61!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.49!30.25!NKX6-2;;chr19:13135386..13135435,+!p4@NFIX!1.49!29.84!NFIX;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.57!SOX8;;chr1:151032860..151032918,+!p1@MLLT11!1.47!326.53!MLLT11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.47!28.62!POU3F3;;chr12:106976774..106976788,+!p1@RFX4!1.47!28.48!RFX4;;chr3:181429704..181429722,+!p1@SOX2!1.46!28.07!SOX2;;chr1:216896780..216896800,-!p2@ESRRG!1.46!27.73!ESRRG;;chr1:151032922..151032951,+!p2@MLLT11!1.43!42.28!MLLT11;;chr5:2751762..2751784,-!p1@IRX2!1.43!25.76!IRX2;;chr2:60781201..60781258,-!p3@BCL11A!1.41!24.88!BCL11A;;chr6:126112039..126112062,+!p8@NCOA7!1.40!29.09!NCOA7;;chr7:63505799..63505904,+!p1@ZNF727!1.40!24.20!ZNF727;;chr3:181429741..181429767,+!p2@SOX2!1.36!22.09!SOX2;;chr12:54447637..54447659,+!p4@HOXC4!1.36!21.75!HOXC4;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.55!KDM5D;;chr19:30863271..30863338,+!p1@ZNF536!1.35!21.41!ZNF536;;chrX:85969626..85969664,+!p1@DACH2!1.35!21.34!DACH2;;chr1:214161272..214161322,+!p1@PROX1!1.34!29.02!PROX1;;chr4:81118647..81118666,+!p1@PRDM8!1.34!27.60!PRDM8;;chr2:166326200..166326216,+!p1@CSRNP3!1.33!29.57!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.33!20.32!MYT1L;;chr12:26277956..26277980,-!p1@BHLHE41!1.32!69.74!BHLHE41;;chr19:13135582..13135600,+!p3@NFIX!1.29!18.42!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.28!25.35!TUB;;chr10:64134120..64134183,+!p1@ZNF365!1.28!21.75!ZNF365;;chr12:24102576..24102623,-!p2@SOX5!1.27!17.67!SOX5;;chr2:145275982..145276003,-!p7@ZEB2!1.27!17.67!ZEB2;;chr19:46801639..46801699,+!p1@HIF3A!1.26!17.06!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.24!21.61!ARNT2;;chr19:38085768..38085821,+!p1@ZNF540!1.23!23.86!ZNF540;;chr12:54779511..54779577,-!p5@ZNF385A!1.23!15.90!ZNF385A;;chr12:54447599..54447630,+!p3@HOXC4!1.21!18.56!HOXC4;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.29!ZIC2;;chr3:147127177..147127194,+!p2@ZIC1!1.21!15.29!ZIC1;;chr16:85932760..85932775,+!p1@IRF8!1.20!14.68!IRF8;;chr12:54785074..54785122,-!p2@ZNF385A!1.17!21.21!ZNF385A;;chr1:244214577..244214593,+!p1@ZNF238!1.17!13.93!ZNF238;;chr3:147110055..147110129,-!p1@ZIC4!1.17!13.93!ZIC4;;chr9:77112244..77112262,+!p1@RORB!1.15!14.68!RORB;;chr16:51185172..51185197,-!p1@SALL1!1.15!13.19!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.15!13.19!SPI1;;chr12:106976678..106976708,+!p2@RFX4!1.15!13.05!RFX4;;chr1:165414325..165414369,-!p1@RXRG!1.15!12.98!RXRG;;chr1:217263131..217263207,-!p4@ESRRG!1.14!12.91!ESRRG;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.85!POU3F3;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.85!HOXD1;;chr9:135457981..135458003,+!p1@BARHL1!1.13!12.64!BARHL1;;chr14:33403881..33403924,+!p1@NPAS3!1.13!12.44!NPAS3;;chrX:118739835..118739862,-!p1@NKRF!1.12!13.46!NKRF;;chrX:101975643..101975683,+!p1@BHLHB9!1.11!26.17!BHLHB9;;chr17:7492684..7492778,-!p2@SOX15!1.11!25.22!SOX15;;chr16:51185318..51185348,-!p2@SALL1!1.11!11.76!SALL1;;chr6:19837592..19837621,+!p1@ID4!1.10!71.03!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.58!BHLHE41;;chr4:57522166..57522260,-!p2@HOPX!1.10!13.25!HOPX;;chr3:147127142..147127168,+!p1@ZIC1!1.10!11.55!ZIC1;;chr6:15401104..15401166,+!p5@JARID2!1.09!11.35!JARID2;;chr11:125034640..125034655,+!p1@PKNOX2!1.08!11.08!PKNOX2;;chr20:21494654..21494678,-!p2@NKX2-2!1.08!10.94!NKX2-2;;chr2:180726040..180726052,-!p2@ZNF385B!1.08!10.94!ZNF385B;;chr21:47063625..47063658,+!p1@PCBP3!1.07!47.85!PCBP3;;chr14:73360799..73360817,-!p1@DPF3!1.07!38.00!DPF3;;chr10:111987079..111987115,+!p3@MXI1!1.07!14.68!MXI1;;chr1:40105299..40105326,-!p1@HEYL!1.06!10.60!HEYL;;chr14:58798013..58798071,+!p2@ARID4A!1.06!10.54!ARID4A;;chr12:54447686..54447704,+!p5@HOXC4!1.06!10.40!HOXC4;;chr21:39870339..39870443,-!p1@ERG!1.05!10.26!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.41!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.04!11.96!NPAS3;;chr12:52437488..52437507,+!p2@NR4A1!1.03!9.65!NR4A1;;chr7:73038839..73038862,-!p1@MLXIPL!1.03!9.65!MLXIPL;;chr6:126112074..126112144,+!p1@NCOA7!1.02!129.89!NCOA7;;chr19:53636125..53636178,-!p1@ZNF415!1.02!27.66!ZNF415;;chr14:21994337..21994442,-!p1@SALL2!1.02!26.78!SALL2;;chr3:141105705..141105770,+!p4@ZBTB38!1.02!11.49!ZBTB38;;chr22:41763452..41763466,+!p2@TEF!1.02!9.58!TEF;;chr13:100634004..100634025,+!p2@ZIC2!1.02!9.52!ZIC2;;chr8:145560111..145560165,-!p2@SCRT1!1.02!9.52!SCRT1;;chr2:95963052..95963106,+!p1@KCNIP3!1.02!9.45!KCNIP3;;chrX:118739782..118739829,-!p2@NKRF!1.02!9.45!NKRF;;chr2:145277640..145277771,-!p1@ZEB2!1.01!126.90!ZEB2;;chr7:28725740..28725778,+!p1@CREB5!1.01!85.03!CREB5;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.30!SOX18;;chr8:145560371..145560449,-!p1@SCRT1!1.01!9.31!SCRT1;;chr2:68592406..68592424,+!p1@PLEK!1.01!9.31!PLEK;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.24!IRX1;;chr8:106330656..106330684,+!p1@ZFPM2!1.00!24.13!ZFPM2;;chr1:61548069..61548102,+!p3@NFIA!1.00!21.95!NFIA;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.49!ZFPM2;;chr13:72441315..72441454,-!p1@DACH1!0.99!17.88!DACH1;;chr3:52001396..52001425,-!p4@PCBP4!0.99!15.77!PCBP4;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.70!ZNF366;;chr6:126070769..126070801,+!p1@HEY2!0.98!9.86!HEY2;;chr2:95963120..95963136,+!p2@KCNIP3!0.97!8.43!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!0.97!8.36!RBPJ;;chr18:53070846..53070902,-!p6@TCF4!0.97!8.29!TCF4;;chr17:46132044..46132080,+!p4@NFE2L1!0.96!8.16!NFE2L1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.96!8.16!ZSCAN1;;chr1:216896801..216896812,-!p5@ESRRG!0.96!8.09!ESRRG;;chr7:27170359..27170381,-!p1@HOXA4!0.96!8.02!HOXA4;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.96!NFIX;;chr11:8102819..8102845,+!p3@TUB!0.95!9.99!TUB;;chr19:21512202..21512225,-!p1@ZNF708!0.94!41.26!ZNF708;;chr1:151032782..151032801,+!p4@MLLT11!0.94!15.70!MLLT11;;chr12:125003087..125003141,-!p4@NCOR2!0.94!10.06!NCOR2;;chr19:22193731..22193751,-!p1@ZNF208!0.94!7.61!ZNF208;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.83!MEF2C;;chr18:22932080..22932170,-!p1@ZNF521!0.92!32.15!ZNF521;;chr2:178128250..178128293,-!p6@NFE2L2!0.92!19.10!NFE2L2;;chr3:126076242..126076257,-!p1@KLF15!0.92!9.18!KLF15;;chr2:2328725..2328739,-!p5@MYT1L!0.92!7.27!MYT1L;;chr17:53344980..53345011,+!p3@HLF!0.92!7.27!HLF;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.14!OLIG1;;chr2:74229812..74229867,+!p1@TET3!0.90!17.94!TET3;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.71!ZNF454;;chr2:180726058..180726098,-!p3@ZNF385B!0.90!7.00!ZNF385B;;chr12:103351444..103351461,+!p1@ASCL1!0.90!7.00!ASCL1;;chr2:145275947..145275981,-!p10@ZEB2!0.90!6.93!ZEB2;;chr19:21512144..21512191,-!p2@ZNF708!0.89!33.31!ZNF708;;chr12:54785054..54785072,-!p4@ZNF385A!0.89!7.82!ZNF385A;;chr10:38265517..38265591,-!p1@ZNF25!0.88!27.05!ZNF25;;chr6:143266185..143266238,-!p2@HIVEP2!0.88!9.38!HIVEP2;;chr11:125034605..125034636,+!p2@PKNOX2!0.88!6.66!PKNOX2;;chr11:31832658..31832681,-!p1@PAX6!0.88!6.66!PAX6;;chr12:26277798..26277809,-!p5@BHLHE41!0.88!6.59!BHLHE41;;chr14:58797974..58798011,+!p3@ARID4A!0.88!6.59!ARID4A;;chr7:150974206..150974255,-!p1@SMARCD3!0.87!42.55!SMARCD3;;chr19:13135731..13135787,+!p10@NFIX!0.87!6.46!NFIX;;chr2:180726291..180726311,-!p1@ZNF385B!0.87!6.39!ZNF385B;;chr4:26344778..26344807,+!p8@RBPJ!0.87!6.39!RBPJ;;chr2:214016314..214016343,-!p2@IKZF2!0.85!10.67!IKZF2;;chr15:57511609..57511651,+!p2@TCF12!0.85!10.60!TCF12;;chr6:1312325..1312340,+!p1@FOXQ1!0.85!10.33!FOXQ1;;chr1:151032739..151032748,+!p6@MLLT11!0.85!7.75!MLLT11;;chr9:135457530..135457541,+!p2@BARHL1!0.85!6.12!BARHL1;;chr17:46131916..46131952,+!p7@NFE2L1!0.85!6.05!NFE2L1;;chr17:4890919..4890985,-!p1@CAMTA2!0.84!59.81!CAMTA2;;chr7:28448965..28448994,+!p2@CREB5!0.84!22.23!CREB5;;chrX:106959661..106959763,-!p4@TSC22D3!0.84!18.22!TSC22D3;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.34!ZBTB20;;chr19:21512115..21512135,-!p3@ZNF708!0.84!12.57!ZNF708;;chr5:3595934..3595957,+!p2@IRX1!0.84!5.98!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.84!5.85!SOX7;;chr13:100634130..100634143,+!p3@ZIC2!0.84!5.85!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.83!63.96!SOX9;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.62!BCL11A;;chr18:52989031..52989079,-!p2@TCF4!0.83!14.41!TCF4;;chr2:176033027..176033050,-!p3@ATF2!0.83!8.22!ATF2;;chr8:55370487..55370503,+!p1@SOX17!0.83!5.78!SOX17;;chr14:33403648..33403710,+!p3@NPAS3!0.83!5.78!NPAS3;;chr2:180726331..180726344,-!p5@ZNF385B!0.83!5.71!ZNF385B;;chr2:2330039..2330072,-!p6@MYT1L!0.83!5.71!MYT1L;;chr1:217251619..217251658,-!p6@ESRRG!0.83!5.71!ESRRG;;chr2:2335109..2335134,-!p2@MYT1L!0.82!5.64!MYT1L;;chr10:48359344..48359376,+!p2@ZNF488!0.82!5.64!ZNF488;;chr1:61547894..61547968,+!p2@NFIA!0.81!17.06!NFIA;;chr1:151032833..151032850,+!p3@MLLT11!0.81!13.05!MLLT11;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.81!12.17!ZNF395;;chr20:45142154..45142227,-!p1@ZNF334!0.81!11.28!ZNF334;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.19!ZNF835;;chrX:101186981..101187030,-!p1@ZMAT1!0.80!18.62!ZMAT1;;chr18:5298908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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pons%252c%2520adult%252c%2520pool1.CNhs10640.10033-101E6.hg38.nobarcode.ctss.bed.gz
|id=FF:10033-101E6
|is_a=EFO:0002091;;FF:0010033
|is_obsolete=
|library_id=CNhs10640
|library_id_phase_based=2:CNhs10640
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10033
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10033
|name=pons, adult, pool1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10640,LSID658,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=101
|rna_catalog_number=Cat:636572
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=8101345A
|rna_od260/230=
|rna_od260/280=
|rna_position=E6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.01E+08
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=18-54 years old adult
|sample_disease=normal
|sample_donor(cell lot)=20 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.48115587673178e-278!GO:0005737;cytoplasm;4.15293750909862e-164!GO:0044444;cytoplasmic part;7.22086561841134e-111!GO:0043226;organelle;2.03104087709141e-98!GO:0043229;intracellular organelle;4.44116821030808e-98!GO:0043227;membrane-bound organelle;5.67860787381024e-91!GO:0043231;intracellular membrane-bound organelle;5.70715524607306e-91!GO:0044422;organelle part;1.19226805427395e-64!GO:0044446;intracellular organelle part;8.32289228094708e-64!GO:0005515;protein binding;6.98385958253595e-59!GO:0032991;macromolecular complex;5.78894741896853e-54!GO:0016043;cellular component organization and biogenesis;6.25816075786942e-45!GO:0005739;mitochondrion;2.24738788586989e-43!GO:0033036;macromolecule localization;1.24179626470515e-42!GO:0015031;protein transport;3.82188998999018e-41!GO:0031090;organelle membrane;3.47159978561069e-40!GO:0008104;protein localization;3.05748197732656e-39!GO:0045184;establishment of protein localization;2.09935243610119e-38!GO:0003723;RNA binding;1.09586214661782e-37!GO:0030529;ribonucleoprotein complex;5.83475630645746e-36!GO:0046907;intracellular transport;1.21437658262106e-31!GO:0044429;mitochondrial part;1.88703717923512e-31!GO:0043234;protein complex;2.35967881095709e-30!GO:0051649;establishment of cellular localization;2.24948320161721e-29!GO:0016192;vesicle-mediated transport;3.19976743268594e-29!GO:0051641;cellular localization;3.19976743268594e-29!GO:0043233;organelle lumen;5.27729954524197e-29!GO:0031974;membrane-enclosed lumen;5.27729954524197e-29!GO:0031975;envelope;1.15990734903234e-27!GO:0031967;organelle envelope;1.60607159415829e-27!GO:0044428;nuclear part;4.59450707728666e-27!GO:0044238;primary metabolic process;5.74705988756556e-26!GO:0019538;protein metabolic process;3.18886797126721e-25!GO:0005829;cytosol;4.99007672050301e-24!GO:0044237;cellular metabolic process;5.95076855566638e-24!GO:0016071;mRNA metabolic process;1.14137173024509e-23!GO:0006886;intracellular protein transport;2.81857672751576e-23!GO:0006396;RNA processing;6.86916523321546e-22!GO:0005740;mitochondrial envelope;1.04544229132441e-21!GO:0044260;cellular macromolecule metabolic process;1.22701964098171e-21!GO:0043170;macromolecule metabolic process;1.59689769050177e-21!GO:0031966;mitochondrial membrane;3.0854830054721e-21!GO:0006119;oxidative phosphorylation;3.46759791742934e-21!GO:0005794;Golgi apparatus;3.46759791742934e-21!GO:0008380;RNA splicing;7.89783277832014e-21!GO:0044267;cellular protein metabolic process;8.28066183662001e-21!GO:0031982;vesicle;1.2640807534005e-19!GO:0006397;mRNA processing;1.54660313059812e-19!GO:0009058;biosynthetic process;1.89399971198731e-19!GO:0006996;organelle organization and biogenesis;3.26662138119559e-19!GO:0031410;cytoplasmic vesicle;4.6449632079571e-19!GO:0019866;organelle inner membrane;7.71784885289655e-19!GO:0005840;ribosome;8.37579693735066e-19!GO:0005743;mitochondrial inner membrane;1.96734033921307e-18!GO:0031988;membrane-bound vesicle;2.32385536855843e-18!GO:0016023;cytoplasmic membrane-bound vesicle;6.56686221821123e-18!GO:0000166;nucleotide binding;1.05316048304106e-17!GO:0005634;nucleus;1.5737358198801e-17!GO:0065003;macromolecular complex assembly;2.27785620668108e-17!GO:0006412;translation;2.41194015748668e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6356634644222e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.69229048074867e-17!GO:0016462;pyrophosphatase activity;3.8276227481042e-17!GO:0017111;nucleoside-triphosphatase activity;3.2570607396995e-16!GO:0012505;endomembrane system;4.24107262089655e-16!GO:0031981;nuclear lumen;1.94842771696321e-15!GO:0022607;cellular component assembly;1.98124404307705e-15!GO:0044455;mitochondrial membrane part;9.85990462447479e-15!GO:0003735;structural constituent of ribosome;1.45274760638683e-14!GO:0006512;ubiquitin cycle;1.52294628097329e-14!GO:0005746;mitochondrial respiratory chain;2.12431067796e-14!GO:0009059;macromolecule biosynthetic process;2.29669626272432e-14!GO:0044249;cellular biosynthetic process;2.3912171418872e-14!GO:0016874;ligase activity;4.07959963277737e-14!GO:0048770;pigment granule;5.31184201140629e-14!GO:0042470;melanosome;5.31184201140629e-14!GO:0006457;protein folding;6.93476343068001e-14!GO:0005681;spliceosome;7.42271293575237e-14!GO:0032553;ribonucleotide binding;1.34356989858935e-13!GO:0032555;purine ribonucleotide binding;1.34356989858935e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.75785013068474e-13!GO:0003954;NADH dehydrogenase activity;1.75785013068474e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.75785013068474e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.4120198607373e-13!GO:0048193;Golgi vesicle transport;5.78341162453458e-13!GO:0017076;purine nucleotide binding;7.33307327320573e-13!GO:0045045;secretory pathway;1.24553292771182e-12!GO:0033279;ribosomal subunit;2.6187870390507e-12!GO:0031980;mitochondrial lumen;3.17400420303776e-12!GO:0005759;mitochondrial matrix;3.17400420303776e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.7738530549734e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0042773;ATP synthesis coupled electron transport;1.08452360065938e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.19769891915129e-11!GO:0045271;respiratory chain complex I;1.19769891915129e-11!GO:0005747;mitochondrial respiratory chain complex I;1.19769891915129e-11!GO:0007264;small GTPase mediated signal transduction;1.51036734190983e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54681601497647e-11!GO:0043412;biopolymer modification;2.20151008911791e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.46339789760733e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.71999416155112e-11!GO:0019941;modification-dependent protein catabolic process;2.91407135609971e-11!GO:0043632;modification-dependent macromolecule catabolic process;2.91407135609971e-11!GO:0044257;cellular protein catabolic process;3.35407690412078e-11!GO:0006810;transport;4.96374794438681e-11!GO:0008092;cytoskeletal protein binding;5.86609323469554e-11!GO:0022618;protein-RNA complex assembly;6.9350681559729e-11!GO:0003924;GTPase activity;7.29130068785446e-11!GO:0005783;endoplasmic reticulum;9.00688623558466e-11!GO:0006464;protein modification process;9.33999004738684e-11!GO:0043283;biopolymer metabolic process;9.71919456936922e-11!GO:0008135;translation factor activity, nucleic acid binding;1.09679557020242e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.11870414503048e-10!GO:0051082;unfolded protein binding;1.15783294351262e-10!GO:0030695;GTPase regulator activity;1.47911896903463e-10!GO:0005768;endosome;1.57772171446979e-10!GO:0044265;cellular macromolecule catabolic process;1.66142682015201e-10!GO:0019829;cation-transporting ATPase activity;2.34001770804413e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.6326698853357e-10!GO:0044431;Golgi apparatus part;2.77772902454179e-10!GO:0008565;protein transporter activity;4.19945966066486e-10!GO:0007010;cytoskeleton organization and biogenesis;5.0644909034474e-10!GO:0043687;post-translational protein modification;5.94191624129919e-10!GO:0006605;protein targeting;6.86187994974297e-10!GO:0030135;coated vesicle;7.89438702582312e-10!GO:0005654;nucleoplasm;8.37857255964935e-10!GO:0016044;membrane organization and biogenesis;8.90886797550166e-10!GO:0005525;GTP binding;1.01083004739847e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.2747150748673e-09!GO:0043228;non-membrane-bound organelle;1.72492925982888e-09!GO:0043232;intracellular non-membrane-bound organelle;1.72492925982888e-09!GO:0005083;small GTPase regulator activity;1.76188655232935e-09!GO:0032940;secretion by cell;2.63851661510089e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.51448195315998e-09!GO:0044248;cellular catabolic process;4.33682253458457e-09!GO:0051186;cofactor metabolic process;4.77387562720428e-09!GO:0044445;cytosolic part;5.12751752339886e-09!GO:0051179;localization;5.31640738136695e-09!GO:0006461;protein complex assembly;6.0425264406219e-09!GO:0051234;establishment of localization;8.99725783709633e-09!GO:0015986;ATP synthesis coupled proton transport;1.17074780211239e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17074780211239e-08!GO:0044451;nucleoplasm part;1.22473788882582e-08!GO:0043285;biopolymer catabolic process;1.60933641362657e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.99898736789621e-08!GO:0030163;protein catabolic process;2.3744677513674e-08!GO:0032561;guanyl ribonucleotide binding;2.61935528722729e-08!GO:0019001;guanyl nucleotide binding;2.61935528722729e-08!GO:0019787;small conjugating protein ligase activity;4.2813328768515e-08!GO:0008639;small protein conjugating enzyme activity;5.05676487373099e-08!GO:0015631;tubulin binding;7.8071936873285e-08!GO:0009060;aerobic respiration;8.08758993989251e-08!GO:0003743;translation initiation factor activity;8.66719816809962e-08!GO:0000139;Golgi membrane;9.03264855354963e-08!GO:0004842;ubiquitin-protein ligase activity;9.10189069807336e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.56382452553483e-08!GO:0032559;adenyl ribonucleotide binding;1.00973797362761e-07!GO:0046034;ATP metabolic process;1.40828998929745e-07!GO:0006793;phosphorus metabolic process;1.47411069388745e-07!GO:0006796;phosphate metabolic process;1.47411069388745e-07!GO:0008134;transcription factor binding;1.49557862070655e-07!GO:0010467;gene expression;1.5115217792706e-07!GO:0045333;cellular respiration;1.52770790502988e-07!GO:0009057;macromolecule catabolic process;1.53084466453835e-07!GO:0006413;translational initiation;1.72864853855516e-07!GO:0015935;small ribosomal subunit;1.72864853855516e-07!GO:0048471;perinuclear region of cytoplasm;2.065899409219e-07!GO:0030029;actin filament-based process;2.14098968222148e-07!GO:0006163;purine nucleotide metabolic process;2.23073282364634e-07!GO:0006446;regulation of translational initiation;2.37806340597886e-07!GO:0015630;microtubule cytoskeleton;2.45470410884237e-07!GO:0005524;ATP binding;2.48884631253623e-07!GO:0016881;acid-amino acid ligase activity;2.99694760814933e-07!GO:0016604;nuclear body;3.09572640143048e-07!GO:0048475;coated membrane;3.12245632110706e-07!GO:0030117;membrane coat;3.12245632110706e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.2238622414777e-07!GO:0009150;purine ribonucleotide metabolic process;3.25568359578402e-07!GO:0044440;endosomal part;3.47838238679582e-07!GO:0010008;endosome membrane;3.47838238679582e-07!GO:0016607;nuclear speck;3.98893666614126e-07!GO:0030554;adenyl nucleotide binding;4.17585084179997e-07!GO:0005761;mitochondrial ribosome;4.36436228131872e-07!GO:0000313;organellar ribosome;4.36436228131872e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.84490413326172e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.84490413326172e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.17908033558036e-07!GO:0006754;ATP biosynthetic process;5.65659392243874e-07!GO:0006753;nucleoside phosphate metabolic process;5.65659392243874e-07!GO:0009141;nucleoside triphosphate metabolic process;6.00342680970959e-07!GO:0005635;nuclear envelope;6.31296737150709e-07!GO:0006164;purine nucleotide biosynthetic process;6.3291221014417e-07!GO:0006732;coenzyme metabolic process;6.67733066465035e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.00322873242407e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.61925930115935e-07!GO:0019899;enzyme binding;8.83574812582724e-07!GO:0031965;nuclear membrane;8.92019667785043e-07!GO:0009152;purine ribonucleotide biosynthetic process;9.02889374065705e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.4908939917402e-07!GO:0009259;ribonucleotide metabolic process;1.01782001407757e-06!GO:0016887;ATPase activity;1.06003542081595e-06!GO:0006897;endocytosis;1.17096582495481e-06!GO:0010324;membrane invagination;1.17096582495481e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.3783494631829e-06!GO:0000375;RNA splicing, via transesterification reactions;1.3783494631829e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.3783494631829e-06!GO:0031252;leading edge;1.52521965001375e-06!GO:0030136;clathrin-coated vesicle;1.53400986301177e-06!GO:0006099;tricarboxylic acid cycle;1.65900577343541e-06!GO:0046356;acetyl-CoA catabolic process;1.65900577343541e-06!GO:0042623;ATPase activity, coupled;1.74439147169706e-06!GO:0044432;endoplasmic reticulum part;2.24662863697624e-06!GO:0005905;coated pit;3.05034540590881e-06!GO:0003779;actin binding;3.06531707395459e-06!GO:0006913;nucleocytoplasmic transport;3.28648204857707e-06!GO:0005770;late endosome;3.84809140535128e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.9260689361517e-06!GO:0043005;neuron projection;4.96813275576652e-06!GO:0051169;nuclear transport;5.23677350601305e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.44742788548058e-06!GO:0009260;ribonucleotide biosynthetic process;5.51495177405579e-06!GO:0009055;electron carrier activity;5.51495177405579e-06!GO:0007265;Ras protein signal transduction;5.81019044142574e-06!GO:0008287;protein serine/threonine phosphatase complex;6.0942340206282e-06!GO:0009109;coenzyme catabolic process;6.31806207524718e-06!GO:0006084;acetyl-CoA metabolic process;6.85338971296142e-06!GO:0005769;early endosome;7.26315260157186e-06!GO:0005874;microtubule;8.44140187405118e-06!GO:0045259;proton-transporting ATP synthase complex;8.62558282957014e-06!GO:0019717;synaptosome;1.05827168266724e-05!GO:0005730;nucleolus;1.33297466805545e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52148607433074e-05!GO:0016310;phosphorylation;1.55776355995419e-05!GO:0015934;large ribosomal subunit;1.57756530680154e-05!GO:0005773;vacuole;1.6666143374778e-05!GO:0008047;enzyme activator activity;1.69423360082313e-05!GO:0051187;cofactor catabolic process;2.06343883751001e-05!GO:0005789;endoplasmic reticulum membrane;2.08676348872266e-05!GO:0008654;phospholipid biosynthetic process;2.18390805277644e-05!GO:0005096;GTPase activator activity;2.26793452821724e-05!GO:0007399;nervous system development;2.4503458412735e-05!GO:0005798;Golgi-associated vesicle;3.13086927012255e-05!GO:0008017;microtubule binding;3.22177282102618e-05!GO:0046467;membrane lipid biosynthetic process;3.5015834308197e-05!GO:0030120;vesicle coat;3.811407477769e-05!GO:0030662;coated vesicle membrane;3.811407477769e-05!GO:0007242;intracellular signaling cascade;4.14296948043198e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.16058820547248e-05!GO:0015399;primary active transmembrane transporter activity;4.16058820547248e-05!GO:0022890;inorganic cation transmembrane transporter activity;4.38371752488521e-05!GO:0017038;protein import;4.94250071859733e-05!GO:0051246;regulation of protein metabolic process;4.94250071859733e-05!GO:0009056;catabolic process;5.02326989250248e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.00865054362121e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.20270398690106e-05!GO:0048523;negative regulation of cellular process;6.58016162650356e-05!GO:0006613;cotranslational protein targeting to membrane;6.80780386444327e-05!GO:0005793;ER-Golgi intermediate compartment;6.99480766032266e-05!GO:0051056;regulation of small GTPase mediated signal transduction;7.65971749394463e-05!GO:0043492;ATPase activity, coupled to movement of substances;7.91454392072998e-05!GO:0016126;sterol biosynthetic process;9.17947261816366e-05!GO:0030133;transport vesicle;0.000102594606138997!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000105964459822664!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000127436061687798!GO:0006650;glycerophospholipid metabolic process;0.000139357284480746!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000149299602371209!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000156494743311525!GO:0016197;endosome transport;0.000158005906022067!GO:0044453;nuclear membrane part;0.000163649647878631!GO:0000323;lytic vacuole;0.000183585295480271!GO:0005764;lysosome;0.000183585295480271!GO:0006643;membrane lipid metabolic process;0.000184816721847721!GO:0051188;cofactor biosynthetic process;0.000193389149622185!GO:0006752;group transfer coenzyme metabolic process;0.000197632436837562!GO:0006403;RNA localization;0.000200104346872852!GO:0050657;nucleic acid transport;0.000219328121823146!GO:0051236;establishment of RNA localization;0.000219328121823146!GO:0050658;RNA transport;0.000219328121823146!GO:0030118;clathrin coat;0.000223714691482422!GO:0008610;lipid biosynthetic process;0.00024150443251601!GO:0031072;heat shock protein binding;0.00024584402482882!GO:0005643;nuclear pore;0.00025442277990242!GO:0032446;protein modification by small protein conjugation;0.000273071501063321!GO:0015980;energy derivation by oxidation of organic compounds;0.000295127981594733!GO:0048489;synaptic vesicle transport;0.000325320356335384!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000339513630407335!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000346503361754485!GO:0006892;post-Golgi vesicle-mediated transport;0.000360141655682436!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000391568021259714!GO:0030027;lamellipodium;0.000405562592388523!GO:0000245;spliceosome assembly;0.000441723697063117!GO:0030425;dendrite;0.000446590638655483!GO:0016567;protein ubiquitination;0.000497758755774234!GO:0005938;cell cortex;0.00050073514146202!GO:0003712;transcription cofactor activity;0.000505960726529239!GO:0000151;ubiquitin ligase complex;0.000508458196161273!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000509896947472319!GO:0004812;aminoacyl-tRNA ligase activity;0.000509896947472319!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000509896947472319!GO:0005085;guanyl-nucleotide exchange factor activity;0.000539743337634539!GO:0005741;mitochondrial outer membrane;0.000557570890422481!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000614824439395003!GO:0008021;synaptic vesicle;0.000639988646077753!GO:0043038;amino acid activation;0.000653344313632813!GO:0006418;tRNA aminoacylation for protein translation;0.000653344313632813!GO:0043039;tRNA aminoacylation;0.000653344313632813!GO:0008026;ATP-dependent helicase activity;0.000670889235625801!GO:0048519;negative regulation of biological process;0.000670889235625801!GO:0003729;mRNA binding;0.000687689291471707!GO:0019867;outer membrane;0.000689167804106284!GO:0031968;organelle outer membrane;0.000695603572387914!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000696781815532224!GO:0051087;chaperone binding;0.000713045253384984!GO:0000159;protein phosphatase type 2A complex;0.000800532191935073!GO:0008601;protein phosphatase type 2A regulator activity;0.000823441976751049!GO:0030384;phosphoinositide metabolic process;0.000856239639225312!GO:0031901;early endosome membrane;0.000856632109808351!GO:0000902;cell morphogenesis;0.000863587576565257!GO:0032989;cellular structure morphogenesis;0.000863587576565257!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000874293037852234!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000882776360649043!GO:0004386;helicase activity;0.000924176337998281!GO:0022406;membrane docking;0.000948811347418852!GO:0048278;vesicle docking;0.000948811347418852!GO:0045786;negative regulation of progression through cell cycle;0.000950800537362595!GO:0008154;actin polymerization and/or depolymerization;0.00103899629249576!GO:0046578;regulation of Ras protein signal transduction;0.00109773743710137!GO:0016050;vesicle organization and biogenesis;0.0011458048612655!GO:0007019;microtubule depolymerization;0.00118694067064996!GO:0006904;vesicle docking during exocytosis;0.00119032151751924!GO:0006612;protein targeting to membrane;0.00121404553613773!GO:0009108;coenzyme biosynthetic process;0.00123714272762158!GO:0006695;cholesterol biosynthetic process;0.00123714272762158!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00133906173985956!GO:0030427;site of polarized growth;0.00142002339605146!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00143132999615185!GO:0030426;growth cone;0.00143774322097215!GO:0043566;structure-specific DNA binding;0.00151358420795954!GO:0003724;RNA helicase activity;0.00160545401923599!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00163925641379624!GO:0016568;chromatin modification;0.00174069828684081!GO:0005839;proteasome core complex (sensu Eukaryota);0.00176718976443791!GO:0006607;NLS-bearing substrate import into nucleus;0.00177545007127835!GO:0043623;cellular protein complex assembly;0.00178669580396323!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00196437154603214!GO:0006606;protein import into nucleus;0.00197065834975711!GO:0051170;nuclear import;0.00199653579698266!GO:0009966;regulation of signal transduction;0.00201211116119631!GO:0043069;negative regulation of programmed cell death;0.00202244625797233!GO:0019902;phosphatase binding;0.00208064624554871!GO:0031902;late endosome membrane;0.00208064624554871!GO:0009117;nucleotide metabolic process;0.00210295352823095!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00210499610182159!GO:0043209;myelin sheath;0.00210499610182159!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0021780055318962!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0021780055318962!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0021780055318962!GO:0012501;programmed cell death;0.00230174215351466!GO:0016791;phosphoric monoester hydrolase activity;0.00233609682255336!GO:0006915;apoptosis;0.00239767350342047!GO:0043066;negative regulation of apoptosis;0.00239999143661743!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0024308947157536!GO:0048487;beta-tubulin binding;0.00251701361517966!GO:0051261;protein depolymerization;0.0025517027959466!GO:0005875;microtubule associated complex;0.0025612318706977!GO:0019208;phosphatase regulator activity;0.00256368437361251!GO:0051028;mRNA transport;0.00258638916289587!GO:0046474;glycerophospholipid biosynthetic process;0.00259839751527591!GO:0008219;cell death;0.00281397044979556!GO:0016265;death;0.00281397044979556!GO:0001726;ruffle;0.00284522652725509!GO:0044448;cell cortex part;0.00293514901347347!GO:0006891;intra-Golgi vesicle-mediated transport;0.00303751400145895!GO:0005813;centrosome;0.00308260700856973!GO:0004721;phosphoprotein phosphatase activity;0.0032455744469955!GO:0005869;dynactin complex;0.00349057818212679!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00368685678518518!GO:0007272;ensheathment of neurons;0.00374942244001046!GO:0008366;axon ensheathment;0.00374942244001046!GO:0006916;anti-apoptosis;0.00374942244001046!GO:0031114;regulation of microtubule depolymerization;0.00375940358409061!GO:0007026;negative regulation of microtubule depolymerization;0.00375940358409061!GO:0005791;rough endoplasmic reticulum;0.00383788964918936!GO:0016311;dephosphorylation;0.00412001422236819!GO:0005774;vacuolar membrane;0.00416053362402258!GO:0046488;phosphatidylinositol metabolic process;0.00416053362402258!GO:0001508;regulation of action potential;0.00422338022880763!GO:0043087;regulation of GTPase activity;0.00424386433487145!GO:0005099;Ras GTPase activator activity;0.00424386433487145!GO:0048500;signal recognition particle;0.00430286829013567!GO:0007266;Rho protein signal transduction;0.00436441386648246!GO:0007017;microtubule-based process;0.00445454790471166!GO:0051427;hormone receptor binding;0.00449695662911894!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00452163627259569!GO:0003697;single-stranded DNA binding;0.00455569294754527!GO:0006665;sphingolipid metabolic process;0.00462490997637808!GO:0043021;ribonucleoprotein binding;0.00462885133397296!GO:0006644;phospholipid metabolic process;0.00484697012377753!GO:0030258;lipid modification;0.00497302957603207!GO:0065002;intracellular protein transport across a membrane;0.00498100127775074!GO:0030867;rough endoplasmic reticulum membrane;0.0049914568292125!GO:0050811;GABA receptor binding;0.00507211405095878!GO:0016564;transcription repressor activity;0.00524804177866877!GO:0051920;peroxiredoxin activity;0.00527368228582926!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0004667;prostaglandin-D synthase activity;0.00536462051671617!GO:0050802;circadian sleep/wake cycle, sleep;0.00536462051671617!GO:0022410;circadian sleep/wake cycle process;0.00536462051671617!GO:0042749;regulation of circadian sleep/wake cycle;0.00536462051671617!GO:0050767;regulation of neurogenesis;0.00549382586991492!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00611318379495179!GO:0005815;microtubule organizing center;0.00611318379495179!GO:0006414;translational elongation;0.00662426754762513!GO:0004298;threonine endopeptidase activity;0.00678832372611287!GO:0006259;DNA metabolic process;0.00678832372611287!GO:0051287;NAD binding;0.00752973050793286!GO:0012506;vesicle membrane;0.00771527442818673!GO:0030742;GTP-dependent protein binding;0.00774068259449085!GO:0004722;protein serine/threonine phosphatase activity;0.00785084381411088!GO:0019888;protein phosphatase regulator activity;0.00789209065187492!GO:0035257;nuclear hormone receptor binding;0.00789702430306608!GO:0003714;transcription corepressor activity;0.00789702430306608!GO:0008180;signalosome;0.00799014857247449!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00809312576412147!GO:0000314;organellar small ribosomal subunit;0.00827290650104205!GO:0005763;mitochondrial small ribosomal subunit;0.00827290650104205!GO:0051168;nuclear export;0.00873685487002796!GO:0006470;protein amino acid dephosphorylation;0.00895779829748984!GO:0003746;translation elongation factor activity;0.009168680274428!GO:0046489;phosphoinositide biosynthetic process;0.00917294475804751!GO:0051540;metal cluster binding;0.0092301761026649!GO:0051536;iron-sulfur cluster binding;0.0092301761026649!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0092301761026649!GO:0016740;transferase activity;0.00931457176993322!GO:0019887;protein kinase regulator activity;0.00945720020144344!GO:0030132;clathrin coat of coated pit;0.00961183147003998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00985662494360342!GO:0045047;protein targeting to ER;0.00985662494360342!GO:0035035;histone acetyltransferase binding;0.0101120058096382!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0104163568287712!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0104382236315044!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0104382236315044!GO:0015629;actin cytoskeleton;0.0104382236315044!GO:0006323;DNA packaging;0.0110344236126211!GO:0016301;kinase activity;0.011409395769311!GO:0030137;COPI-coated vesicle;0.0114648791156611!GO:0044433;cytoplasmic vesicle part;0.0115220582687841!GO:0006672;ceramide metabolic process;0.0117471069243262!GO:0030658;transport vesicle membrane;0.011789107876547!GO:0006402;mRNA catabolic process;0.0118577780165188!GO:0005048;signal sequence binding;0.0119602741411348!GO:0046519;sphingoid metabolic process;0.0119602741411348!GO:0005765;lysosomal membrane;0.0122124300056975!GO:0008186;RNA-dependent ATPase activity;0.0124286398995778!GO:0007049;cell cycle;0.0124343186970197!GO:0006399;tRNA metabolic process;0.0126514266060624!GO:0008361;regulation of cell size;0.0128537117963468!GO:0030041;actin filament polymerization;0.0133288167391454!GO:0007034;vacuolar transport;0.0133898381054642!GO:0030660;Golgi-associated vesicle membrane;0.0135010642088916!GO:0045055;regulated secretory pathway;0.0136332646470776!GO:0016070;RNA metabolic process;0.0136332646470776!GO:0044255;cellular lipid metabolic process;0.0139406577763061!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055083;monovalent inorganic anion homeostasis;0.0140795595936804!GO:0055064;chloride ion homeostasis;0.0140795595936804!GO:0030644;cellular chloride ion homeostasis;0.0140795595936804!GO:0046930;pore complex;0.0142333286557509!GO:0031124;mRNA 3'-end processing;0.0143674598462512!GO:0006661;phosphatidylinositol biosynthetic process;0.0150327843382377!GO:0042254;ribosome biogenesis and assembly;0.0151096667608397!GO:0033673;negative regulation of kinase activity;0.0151740485010992!GO:0006469;negative regulation of protein kinase activity;0.0151740485010992!GO:0001505;regulation of neurotransmitter levels;0.0153940520931232!GO:0044437;vacuolar part;0.0154981299886616!GO:0035258;steroid hormone receptor binding;0.0158688322725815!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0159232769232513!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159232769232513!GO:0033043;regulation of organelle organization and biogenesis;0.0159232769232513!GO:0016408;C-acyltransferase activity;0.0159564664762431!GO:0030119;AP-type membrane coat adaptor complex;0.0166548071976076!GO:0016363;nuclear matrix;0.0168856935403546!GO:0000287;magnesium ion binding;0.0170712737225849!GO:0030532;small nuclear ribonucleoprotein complex;0.0176175674044129!GO:0006818;hydrogen transport;0.0176705991994178!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0178868795872213!GO:0000059;protein import into nucleus, docking;0.0178868795872213!GO:0009165;nucleotide biosynthetic process;0.0179235014685155!GO:0005100;Rho GTPase activator activity;0.0184004326633893!GO:0048167;regulation of synaptic plasticity;0.0184494695071031!GO:0008312;7S RNA binding;0.0187559100267538!GO:0030424;axon;0.0187841453970721!GO:0046839;phospholipid dephosphorylation;0.0188467380389491!GO:0005885;Arp2/3 protein complex;0.019115650463817!GO:0043681;protein import into mitochondrion;0.0192577601960679!GO:0008250;oligosaccharyl transferase complex;0.0194637935587752!GO:0032011;ARF protein signal transduction;0.0194668940578174!GO:0032012;regulation of ARF protein signal transduction;0.0194668940578174!GO:0019903;protein phosphatase binding;0.0198242822967505!GO:0009892;negative regulation of metabolic process;0.0201068883665867!GO:0031109;microtubule polymerization or depolymerization;0.0202080681497832!GO:0008090;retrograde axon cargo transport;0.02043378713715!GO:0033596;TSC1-TSC2 complex;0.02043378713715!GO:0033693;neurofilament bundle assembly;0.02043378713715!GO:0007269;neurotransmitter secretion;0.0208670637721512!GO:0005868;cytoplasmic dynein complex;0.0208670637721512!GO:0019894;kinesin binding;0.0210271615135573!GO:0042802;identical protein binding;0.0213073286365905!GO:0009066;aspartate family amino acid metabolic process;0.0213703764806037!GO:0030131;clathrin adaptor complex;0.022309614423129!GO:0008139;nuclear localization sequence binding;0.022345059910415!GO:0051539;4 iron, 4 sulfur cluster binding;0.0223562289574619!GO:0042026;protein refolding;0.0229493524056242!GO:0005092;GDP-dissociation inhibitor activity;0.0230126941476488!GO:0016049;cell growth;0.0230223036082102!GO:0051348;negative regulation of transferase activity;0.023134895610333!GO:0016859;cis-trans isomerase activity;0.0231383604924039!GO:0019904;protein domain specific binding;0.0235254256338829!GO:0007005;mitochondrion organization and biogenesis;0.0235993699504395!GO:0015992;proton transport;0.0236807512600188!GO:0019783;small conjugating protein-specific protease activity;0.0237292207702999!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0237292207702999!GO:0051726;regulation of cell cycle;0.0278629339932822!GO:0004843;ubiquitin-specific protease activity;0.028322308097916!GO:0005545;phosphatidylinositol binding;0.0285753687006674!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0286907180409049!GO:0000062;acyl-CoA binding;0.0287268367572412!GO:0004004;ATP-dependent RNA helicase activity;0.0289044575243517!GO:0000209;protein polyubiquitination;0.0291812307016711!GO:0030659;cytoplasmic vesicle membrane;0.0294900269027229!GO:0005762;mitochondrial large ribosomal subunit;0.0296831045677357!GO:0000315;organellar large ribosomal subunit;0.0296831045677357!GO:0019226;transmission of nerve impulse;0.0299053874858943!GO:0030663;COPI coated vesicle membrane;0.029940670377388!GO:0030126;COPI vesicle coat;0.029940670377388!GO:0043284;biopolymer biosynthetic process;0.0299688365015773!GO:0051789;response to protein stimulus;0.0304272738412699!GO:0006986;response to unfolded protein;0.0304272738412699!GO:0042578;phosphoric ester hydrolase activity;0.0306003051484951!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0313426203305387!GO:0019198;transmembrane receptor protein phosphatase activity;0.0313426203305387!GO:0050839;cell adhesion molecule binding;0.0322189668470383!GO:0043086;negative regulation of catalytic activity;0.0323088092852449!GO:0050803;regulation of synapse structure and activity;0.0325154676048501!GO:0019207;kinase regulator activity;0.0325154676048501!GO:0003690;double-stranded DNA binding;0.0326098554945019!GO:0042552;myelination;0.0326209000987021!GO:0031371;ubiquitin conjugating enzyme complex;0.0332789244882556!GO:0030125;clathrin vesicle coat;0.0334334168269267!GO:0030665;clathrin coated vesicle membrane;0.0334334168269267!GO:0006887;exocytosis;0.0335441840614921!GO:0007041;lysosomal transport;0.0342265399816202!GO:0032535;regulation of cellular component size;0.0342265399816202!GO:0016579;protein deubiquitination;0.0342265399816202!GO:0019911;structural constituent of myelin sheath;0.0342265399816202!GO:0007006;mitochondrial membrane organization and biogenesis;0.0342265399816202!GO:0004221;ubiquitin thiolesterase activity;0.0342265399816202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0342265399816202!GO:0050435;beta-amyloid metabolic process;0.034800359090118!GO:0000074;regulation of progression through cell cycle;0.0350638624413977!GO:0033116;ER-Golgi intermediate compartment membrane;0.0350638624413977!GO:0003711;transcription elongation regulator activity;0.0356399856685962!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0357001565435625!GO:0003725;double-stranded RNA binding;0.0358096949187284!GO:0004674;protein serine/threonine kinase activity;0.0361510343074738!GO:0008286;insulin receptor signaling pathway;0.0366950137617163!GO:0003713;transcription coactivator activity;0.036717728996261!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0368136983915019!GO:0004576;oligosaccharyl transferase activity;0.0371050796586291!GO:0001578;microtubule bundle formation;0.0372295263611933!GO:0015682;ferric iron transport;0.0373137908139239!GO:0015091;ferric iron transmembrane transporter activity;0.0373137908139239!GO:0031643;positive regulation of myelination;0.0373137908139239!GO:0006091;generation of precursor metabolites and energy;0.03781454670329!GO:0042158;lipoprotein biosynthetic process;0.0379954546151621!GO:0007030;Golgi organization and biogenesis;0.0383543695358582!GO:0006366;transcription from RNA polymerase II promoter;0.0385126740108752!GO:0006383;transcription from RNA polymerase III promoter;0.038602366952758!GO:0006633;fatty acid biosynthetic process;0.0386935467148123!GO:0006376;mRNA splice site selection;0.0387624746892384!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0387624746892384!GO:0006595;polyamine metabolic process;0.0390015729802808!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0392566600885449!GO:0005516;calmodulin binding;0.0411883845686246!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0412498967493029!GO:0006611;protein export from nucleus;0.0420670922110891!GO:0048468;cell development;0.0421142384995738!GO:0016615;malate dehydrogenase activity;0.0425406918060332!GO:0031628;opioid receptor binding;0.0425406918060332!GO:0031852;mu-type opioid receptor binding;0.0425406918060332!GO:0008088;axon cargo transport;0.0432079977585544!GO:0019201;nucleotide kinase activity;0.0433725987453809!GO:0030832;regulation of actin filament length;0.0437582343917716!GO:0005832;chaperonin-containing T-complex;0.0439405122808274!GO:0000096;sulfur amino acid metabolic process;0.0440480585941645!GO:0031123;RNA 3'-end processing;0.0462901861697529!GO:0044262;cellular carbohydrate metabolic process;0.0470902585997469!GO:0006629;lipid metabolic process;0.0475835267638942!GO:0006497;protein amino acid lipidation;0.0484369358201998!GO:0007243;protein kinase cascade;0.0495395448932079
|sample_id=10033
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=pons
|top_motifs=REST:4.12486325054;NHLH1,2:3.9933663035;ZFP161:3.34527032038;MYFfamily:3.20191944663;ATF2:3.10298241294;ZBTB6:3.07161878191;SOX5:2.96750654629;SOX2:2.94147323511;HIC1:2.81833196691;MED-1{core}:2.75993832686;LMO2:2.70460059676;MTE{core}:2.69857076748;MTF1:2.67513986259;SOX{8,9,10}:2.63528600498;NFIX:2.628509455;PAX5:2.58838574184;GCM1,2:2.52461376993;PRRX1,2:2.49631715155;JUN:2.4721548935;TFAP2B:2.46611345975;CUX2:2.46558633334;EGR1..3:2.41746152516;RREB1:2.41667122498;NKX3-2:2.3889868262;TGIF1:2.36879542494;SOX17:2.32684252733;GTF2I:2.28523076036;GATA4:2.21229011583;FOXM1:2.18797053688;NANOG:2.18150766395;PATZ1:2.17114879114;GFI1B:2.13575198711;XBP1:2.1336836547;PRDM1:2.11989567654;SMAD1..7,9:2.07648217162;RFX1:2.01994436825;MZF1:1.96274693808;AHR_ARNT_ARNT2:1.94066896308;EBF1:1.91031923191;LEF1_TCF7_TCF7L1,2:1.89105531392;NRF1:1.87187283709;KLF4:1.82288286554;BREu{core}:1.81316940538;MAZ:1.76527616483;EP300:1.71012778281;DBP:1.63216969506;HBP1_HMGB_SSRP1_UBTF:1.6018238729;SP1:1.59330824969;SREBF1,2:1.57057195006;HOXA9_MEIS1:1.56307485046;RBPJ:1.54117233978;TFDP1:1.48378554448;ARID5B:1.45817488176;MAFB:1.4494095597;POU6F1:1.44216098652;RFX2..5_RFXANK_RFXAP:1.44085496488;NKX2-3_NKX2-5:1.41079937748;FOX{I1,J2}:1.3777680262;FOXP3:1.36760376694;ESRRA:1.34508797378;POU5F1:1.33779060348;PAX6:1.27102592341;PDX1:1.24124886888;OCT4_SOX2{dimer}:1.23853540355;STAT1,3:1.23531235946;RORA:1.18228832842;CDC5L:1.1130088253;FOX{F1,F2,J1}:1.10518115827;ZNF143:1.0614333611;FOX{D1,D2}:0.995841687824;HOX{A4,D4}:0.987650453457;MYBL2:0.960832740106;FOXQ1:0.916933554628;CREB1:0.911618376485;TFAP2{A,C}:0.896611223606;ZNF423:0.866219022383;HMGA1,2:0.82812415683;MYOD1:0.803251045758;BPTF:0.799399896213;TLX1..3_NFIC{dimer}:0.779042363786;NFIL3:0.778920631341;FOXN1:0.727170110979;ZIC1..3:0.707989447207;SPZ1:0.698551137148;YY1:0.663804512067;XCPE1{core}:0.635240460004;ZEB1:0.61722643132;FOXA2:0.609890853152;GTF2A1,2:0.606652264639;NR3C1:0.582202798731;ADNP_IRX_SIX_ZHX:0.579790129892;HMX1:0.578244292968;ZNF384:0.551512060742;ONECUT1,2:0.548493194127;CRX:0.510421308792;AR:0.508770581327;NFY{A,B,C}:0.500777496497;ZNF238:0.49073848002;NR5A1,2:0.479381068045;MEF2{A,B,C,D}:0.451209759353;TLX2:0.447633636269;FOXO1,3,4:0.439705982879;GFI1:0.413430677395;ATF5_CREB3:0.37890628908;IRF7:0.377233946587;POU3F1..4:0.359447443087;GZF1:0.337416203024;FOXP1:0.297893908629;NFE2L2:0.26760184811;ATF4:0.154750361815;HAND1,2:0.146951547475;NKX6-1,2:0.135320721965;PAX2:0.121992337608;VSX1,2:0.092074633167;NFATC1..3:0.0283757844487;NR1H4:-0.0314661861875;NFE2L1:-0.033948309562;IKZF2:-0.0429674853807;T:-0.0433631737097;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0815069633666;GATA6:-0.0906592855848;TFAP4:-0.10894161344;IRF1,2:-0.111361846384;FOXD3:-0.113697409606;PAX3,7:-0.118182679023;ALX1:-0.164329710607;STAT2,4,6:-0.201248209591;HOX{A6,A7,B6,B7}:-0.223760746668;HSF1,2:-0.258425500752;TFCP2:-0.259527809773;SNAI1..3:-0.260014854499;NFE2:-0.312578509953;LHX3,4:-0.362594176384;TBX4,5:-0.368363745482;TEF:-0.404029029373;ETS1,2:-0.416738792856;PAX8:-0.436234988126;TOPORS:-0.43681893143;SPI1:-0.467965641021;POU1F1:-0.490255468176;ESR1:-0.501428837493;bHLH_family:-0.515214796301;ZNF148:-0.530213171204;PBX1:-0.53776386002;PAX4:-0.542036411505;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.547770019187;IKZF1:-0.563380195085;CEBPA,B_DDIT3:-0.574280510303;ELK1,4_GABP{A,B1}:-0.610682495837;SPIB:-0.612418937552;DMAP1_NCOR{1,2}_SMARC:-0.665218697161;HNF1A:-0.679013694786;UFEwm:-0.682450955204;NANOG{mouse}:-0.699181513103;PPARG:-0.702938882641;TP53:-0.773841761517;ATF6:-0.826016295774;ALX4:-0.843661773106;HNF4A_NR2F1,2:-0.848818474448;TAL1_TCF{3,4,12}:-0.850264141754;FOSL2:-0.860262913611;ELF1,2,4:-0.893171096037;BACH2:-0.907959245032;EVI1:-0.910772909676;TEAD1:-0.921299643815;PAX1,9:-0.925764197339;HLF:-0.967605832211;SRF:-0.96801058634;NKX3-1:-0.975679797488;FOS_FOS{B,L1}_JUN{B,D}:-1.01641078753;TBP:-1.06212674745;NFKB1_REL_RELA:-1.09256236912;RUNX1..3:-1.09606165993;FOXL1:-1.15326992355;E2F1..5:-1.15494013018;ZBTB16:-1.18231083208;HIF1A:-1.20859352484;NKX2-1,4:-1.26608731381;MYB:-1.27221221401;RXR{A,B,G}:-1.37611355183;GLI1..3:-1.51875411384;HES1:-1.52461719065;AIRE:-1.5914602296;POU2F1..3:-1.65663360107;PITX1..3:-1.68566490195;CDX1,2,4:-1.75050482477;EN1,2:-1.99162610511;RXRA_VDR{dimer}:-2.00720242936;NKX2-2,8:-2.04792626238;HOX{A5,B5}:-2.04827465569;STAT5{A,B}:-2.13934356882;NR6A1:-2.63843122458
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10033-101E6;search_select_hide=table117:FF:10033-101E6
}}
}}

Latest revision as of 12:15, 3 June 2020

Name:pons, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10640
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepons
dev stage18-54 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101345A
catalog numberCat:636572
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004952
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10640 CAGE DRX008711 DRR009583
Accession ID Hg19

Library idBAMCTSS
CNhs10640 DRZ001008 DRZ002393
Accession ID Hg38

Library idBAMCTSS
CNhs10640 DRZ012358 DRZ013743
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.189
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0854
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.0806
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.149
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.445
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0286
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0286
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0806
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.104
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.32
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0286
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0429
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.339
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0554
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0235
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0853
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0806
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.145
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0286
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.026
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0286
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.179
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.971
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0.0286
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0286
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.473
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0286
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.676
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00275
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0779
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.409
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0323
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.765
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0286
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.225
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0143
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.646
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.76
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0286
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.207
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.214
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0554
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.473
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0806
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0286
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.546
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0806
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.242
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0286
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10640

Jaspar motifP-value
MA0002.20.0159
MA0003.10.337
MA0004.10.337
MA0006.10.441
MA0007.10.255
MA0009.10.201
MA0014.10.831
MA0017.10.00819
MA0018.20.0493
MA0019.10.464
MA0024.10.854
MA0025.10.247
MA0027.10.506
MA0028.10.192
MA0029.10.161
MA0030.10.0388
MA0031.10.4
MA0035.20.081
MA0038.10.0287
MA0039.20.516
MA0040.10.246
MA0041.10.157
MA0042.10.507
MA0043.10.327
MA0046.10.0848
MA0047.20.32
MA0048.10.0621
MA0050.10.0335
MA0051.10.192
MA0052.10.29
MA0055.10.00194
MA0057.10.874
MA0058.10.421
MA0059.10.0824
MA0060.10.053
MA0061.10.00552
MA0062.20.0655
MA0065.27.32435e-4
MA0066.10.0191
MA0067.10.482
MA0068.10.733
MA0069.10.556
MA0070.10.18
MA0071.10.0361
MA0072.10.679
MA0073.10.513
MA0074.10.168
MA0076.10.474
MA0077.10.0888
MA0078.10.918
MA0079.20.342
MA0080.28.30565e-7
MA0081.10.117
MA0083.10.0915
MA0084.10.337
MA0087.10.253
MA0088.10.188
MA0090.10.231
MA0091.10.405
MA0092.10.33
MA0093.10.406
MA0099.22.86734e-11
MA0100.10.741
MA0101.10.00533
MA0102.20.357
MA0103.10.159
MA0104.20.412
MA0105.11.1716e-4
MA0106.10.0208
MA0107.10.00629
MA0108.20.494
MA0111.10.493
MA0112.20.00128
MA0113.10.353
MA0114.10.00835
MA0115.10.714
MA0116.10.00207
MA0117.10.886
MA0119.10.0509
MA0122.10.957
MA0124.10.629
MA0125.10.218
MA0131.10.954
MA0135.10.0263
MA0136.14.06234e-8
MA0137.20.708
MA0138.20.126
MA0139.10.427
MA0140.10.0714
MA0141.10.0197
MA0142.10.806
MA0143.10.318
MA0144.10.497
MA0145.10.381
MA0146.10.0215
MA0147.10.258
MA0148.10.3
MA0149.10.0162
MA0150.10.00536
MA0152.10.967
MA0153.10.483
MA0154.10.028
MA0155.10.603
MA0156.12.64796e-4
MA0157.10.818
MA0159.10.00844
MA0160.10.0829
MA0162.10.141
MA0163.12.39488e-7
MA0164.10.617
MA0258.10.0156
MA0259.10.745



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10640

Novel motifP-value
10.0385
100.0261
1000.235
1010.876
1020.805
1030.262
1040.126
1050.246
1060.0292
1070.0964
1080.857
1090.0152
110.0158
1100.028
1110.143
1120.368
1130.697
1140.111
1150.92
1160.174
1170.00803
1180.12
1190.156
120.745
1200.12
1210.986
1220.579
1230.627
1240.022
1250.237
1260.0652
1270.577
1280.187
1290.522
130.00134
1300.624
1310.0547
1320.795
1330.00546
1340.261
1350.0908
1360.025
1370.75
1380.807
1390.0669
140.973
1400.181
1410.316
1420.877
1430.0303
1440.928
1450.0595
1460.663
1470.783
1480.155
1490.253
150.0618
1500.142
1510.761
1520.191
1530.804
1540.647
1550.401
1560.439
1570.393
1580.358
1590.00743
160.0662
1600.162
1610.283
1620.84
1630.973
1640.0083
1650.221
1660.853
1670.357
1680.667
1690.0129
170.101
180.153
190.27
20.966
200.0722
210.0636
220.326
230.43
240.107
250.561
266.66356e-6
270.935
280.831
290.0122
30.045
300.63
310.909
320.0168
330.0822
340.761
350.425
360.0996
370.0583
380.379
390.222
40.96
400.0581
410.323
420.245
430.102
440.087
450.798
460.0303
470.0767
480.0605
490.156
50.645
500.353
510.464
520.667
530.963
540.503
550.344
560.541
570.233
580.361
590.102
60.798
600.0763
610.08
620.18
630.153
640.185
650.306
660.326
670.505
680.333
690.461
70.0648
700.012
710.00547
720.467
730.0775
740.734
750.0265
760.271
770.218
780.00303
790.192
80.0383
800.79
810.485
820.428
830.254
840.46
850.3
860.182
870.0128
880.831
890.388
90.494
900.0388
910.473
920.395
930.811
940.0426
950.0634
960.868
970.69
980.172
990.575



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10640


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000988 (pons)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002298 (brainstem)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010033 (human pons - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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