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{{f5samples
{{f5samples
|id=FF:11215-116A9
|DRA_sample_Accession=CAGE@SAMD00005496
|name=Retinal Pigment Epithelial Cells, donor0
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005496
|sample_id=11215
|accession_numbers=CAGE;DRX008440;DRR009312;DRZ000737;DRZ002122;DRZ012087;DRZ013472
|rna_tube_id=116A9
|accession_numbers_RNASeq=sRNA-Seq;DRX037259;DRR041625;DRZ007267
|rna_box=116
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0005388,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0001781,UBERON:0001032,UBERON:0010317,UBERON:0001782,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
|rna_position=A9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000325,CL:0000147,CL:0000255,CL:0000149,CL:0002586
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell
|rna_lot_number=
|rna_catalog_number=6545
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=retina
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=retinal pigment epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.5
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10842,LSID700,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10015,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000147,CL:0000149,CL:0000255,CL:0000325,CL:0000548,CL:0002371,CL:0002586
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000966,UBERON:0000970,UBERON:0001016,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001781,UBERON:0001782,UBERON:0001802,UBERON:0002050,UBERON:0002104,UBERON:0002346,UBERON:0002532,UBERON:0003056,UBERON:0003071,UBERON:0003072,UBERON:0003075,UBERON:0004121,UBERON:0004128,UBERON:0004456,UBERON:0004923,UBERON:0005085,UBERON:0005291,UBERON:0005388,UBERON:0005423,UBERON:0005424,UBERON:0005743,UBERON:0006598,UBERON:0007284,UBERON:0007625
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000158
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.18!152.07!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.90!160.79!C11orf9;;chr14:57272369..57272391,-!p2@OTX2!1.85!70.52!OTX2;;chr9:126774018..126774055,+!p1@LHX2!1.84!67.45!LHX2;;chr18:56940611..56940660,-!p1@RAX!1.64!42.57!RAX;;chr2:45168875..45168916,+!p1@SIX3!1.57!36.16!SIX3;;chr2:45168834..45168847,+!p2@SIX3!1.53!33.08!SIX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.03!FOXQ1;;chr11:61522844..61522875,+!p2@C11orf9!1.42!25.13!C11orf9;;chr16:1031762..1031781,+!p1@SOX8!1.38!23.08!SOX8;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.42!HMGA2;;chr9:126774058..126774081,+!p3@LHX2!1.33!20.26!LHX2;;chr2:45169193..45169219,+!p3@SIX3!1.32!20.00!SIX3;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.46!SOX10;;chr15:42749722..42749739,-!p2@ZFP106!1.26!30.77!ZFP106;;chr3:52001448..52001478,-!p2@PCBP4!1.24!220.80!PCBP4;;chr9:126773880..126773895,+!p2@LHX2!1.23!15.90!LHX2;;chr1:2985760..2985774,+!p1@PRDM16!1.21!15.13!PRDM16;;chr6:34204921..34204939,+!p3@HMGA1!1.16!394.93!HMGA1;;chr7:100065686..100065701,-!p2@TSC22D4!1.15!13.08!TSC22D4;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.08!SOX11;;chr6:34204672..34204692,+!p1@HMGA1!1.14!1424.32!HMGA1;;chr18:56940663..56940691,-!p2@RAX!1.12!12.05!RAX;;chr12:66218212..66218244,+!p5@HMGA2!1.10!16.93!HMGA2;;chr14:57277098..57277116,-!p3@OTX2!1.10!11.54!OTX2;;chr5:72744445..72744466,-!p2@FOXD1!1.09!18.98!FOXD1;;chr19:48773337..48773339,+!p2@ZNF114!1.08!11.03!ZNF114;;chr3:52001426..52001447,-!p3@PCBP4!1.05!29.49!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!1.04!19.23!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.02!13.85!RARB;;chr11:31832658..31832681,-!p1@PAX6!1.02!9.49!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.31!NR2F1;;chr2:45169143..45169167,+!p5@SIX3!1.01!9.23!SIX3;;chr17:7492684..7492778,-!p2@SOX15!1.00!19.49!SOX15;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.62!FOSL1;;chr3:69915385..69915438,+!p3@MITF!0.99!8.72!MITF;;chr2:45169179..45169190,+!p8@SIX3!0.98!8.46!SIX3;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.21!ZNF732;;chr12:66218378..66218401,+!p6@HMGA2!0.95!12.57!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.95!RARB;;chr2:45168856..45168867,+!p7@SIX3!0.93!7.44!SIX3;;chr4:54966328..54966335,+!p1@GSX2!0.93!7.44!GSX2;;chr7:64838786..64838809,+!p2@ZNF92!0.88!39.24!ZNF92;;chr6:19837592..19837621,+!p1@ID4!0.87!41.29!ID4;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.54!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.87!14.62!SOHLH2;;chr3:69915369..69915381,+!p4@MITF!0.85!6.15!MITF;;chr22:41763452..41763466,+!p2@TEF!0.82!5.64!TEF;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.29!SOX9;;chr3:25470062..25470084,+!p4@RARB!0.81!5.39!RARB;;chr2:71127699..71127744,+!p1@VAX2!0.80!11.54!VAX2;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.23!DRAP1;;chr15:66994615..66994630,+!p3@SMAD6!0.78!7.44!SMAD6;;chr15:66994663..66994680,+!p1@SMAD6!0.77!12.31!SMAD6;;chr3:52001396..52001425,-!p4@PCBP4!0.77!9.23!PCBP4;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.87!OTX1;;chr13:72441315..72441454,-!p1@DACH1!0.76!10.00!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!0.76!7.69!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!0.75!136.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.67!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.82!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.41!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.87!HMGA2;;chr1:41827095..41827155,+!p1@FOXO6!0.73!6.15!FOXO6;;chr3:141121847..141121868,+!p5@ZBTB38!0.71!6.67!ZBTB38;;chr12:66218573..66218596,+!p7@HMGA2!0.71!6.41!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.71!4.62!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.71!4.10!NR2F1;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.10!FOSL1;;chr9:128509663..128509715,+!p1@PBX3!0.70!15.13!PBX3;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.39!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.85!SMAD9;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.85!CUX1;;chr2:45168959..45168990,+!p6@SIX3!0.69!3.85!SIX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.69!3.85!PEG3;;chr11:65686732..65686756,+!p2@DRAP1!0.68!17.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.13!BCL3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.87!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.28!SALL2;;chr8:86089369..86089408,+!p1@E2F5!0.66!10.77!E2F5;;chr14:57277163..57277168,-!p4@OTX2!0.66!3.59!OTX2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.59!FOXL1;;chr2:45168997..45169020,+!p4@SIX3!0.66!3.59!SIX3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.59!SOX11;;chr3:128206762..128206781,-!p2@GATA2!0.65!25.13!GATA2;;chr15:66994561..66994597,+!p2@SMAD6!0.65!9.23!SMAD6;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.23!PPARG;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.13!BMP2;;chr19:48325184..48325211,+!p1@CRX!0.64!3.33!CRX;;chr12:125003087..125003141,-!p4@NCOR2!0.63!4.36!NCOR2;;chr3:12330560..12330579,+!p1@PPARG!0.63!3.85!PPARG;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.39!ZNF702P;;chr13:37494248..37494260,-!p3@SMAD9!0.61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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002586;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=116
|rna_catalog_number=6545
|rna_concentration=0.5
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=116A9
|rna_weight_ug=10
|rnaseq_library_id=SRhi10015.CCGTCC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=retinal pigment epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.35483615513905e-259!GO:0005737;cytoplasm;3.06495126864867e-219!GO:0043226;organelle;1.48884234659953e-206!GO:0043229;intracellular organelle;2.90416397526933e-206!GO:0043231;intracellular membrane-bound organelle;1.44606576828842e-204!GO:0043227;membrane-bound organelle;3.54434658868503e-204!GO:0044422;organelle part;6.86677939933566e-169!GO:0044446;intracellular organelle part;1.70443361162553e-167!GO:0044444;cytoplasmic part;4.64112039317254e-163!GO:0032991;macromolecular complex;1.37007497162107e-110!GO:0030529;ribonucleoprotein complex;2.62436448721823e-95!GO:0044237;cellular metabolic process;7.50943589817247e-90!GO:0044238;primary metabolic process;8.68280937809311e-88!GO:0005739;mitochondrion;7.48612079880738e-87!GO:0043233;organelle lumen;4.93896031330904e-76!GO:0031974;membrane-enclosed lumen;4.93896031330904e-76!GO:0044428;nuclear part;5.54508078639171e-75!GO:0003723;RNA binding;2.57029344567763e-71!GO:0043170;macromolecule metabolic process;5.51111223142187e-70!GO:0005634;nucleus;2.68433002196926e-69!GO:0005515;protein binding;3.98908415950667e-67!GO:0031090;organelle membrane;5.28441053413256e-61!GO:0005840;ribosome;1.73679484762062e-59!GO:0044429;mitochondrial part;2.73460102342167e-58!GO:0043234;protein complex;1.09139134275549e-55!GO:0016043;cellular component organization and biogenesis;5.39491455479113e-53!GO:0009058;biosynthetic process;8.77924882093426e-53!GO:0006412;translation;3.47221281772942e-52!GO:0003735;structural constituent of ribosome;8.52089669493448e-51!GO:0031967;organelle envelope;1.69913067524986e-50!GO:0031975;envelope;3.69022022166212e-50!GO:0006396;RNA processing;5.50020835298514e-50!GO:0044249;cellular biosynthetic process;2.45134385457596e-48!GO:0033036;macromolecule localization;4.17698367542838e-46!GO:0019538;protein metabolic process;5.79180437114973e-46!GO:0015031;protein transport;1.3632013807962e-45!GO:0033279;ribosomal subunit;2.78819957108795e-44!GO:0005829;cytosol;4.2072242879133e-44!GO:0008104;protein localization;1.39613986769669e-42!GO:0045184;establishment of protein localization;2.04809017989809e-42!GO:0031981;nuclear lumen;2.62302829715601e-42!GO:0043228;non-membrane-bound organelle;5.50072764618583e-41!GO:0043232;intracellular non-membrane-bound organelle;5.50072764618583e-41!GO:0044260;cellular macromolecule metabolic process;5.52177100546838e-41!GO:0006996;organelle organization and biogenesis;1.05393503830229e-40!GO:0009059;macromolecule biosynthetic process;1.54133901958131e-40!GO:0044267;cellular protein metabolic process;2.70302918124534e-40!GO:0016071;mRNA metabolic process;9.11333364812529e-39!GO:0046907;intracellular transport;2.01383793380414e-38!GO:0008380;RNA splicing;1.05436357869738e-36!GO:0065003;macromolecular complex assembly;1.36581790256109e-36!GO:0005740;mitochondrial envelope;3.80683723129193e-36!GO:0043283;biopolymer metabolic process;1.05199094465125e-34!GO:0006397;mRNA processing;6.1322468141496e-34!GO:0031966;mitochondrial membrane;8.30130097049753e-34!GO:0019866;organelle inner membrane;2.09391332519962e-33!GO:0006259;DNA metabolic process;2.85288395407358e-33!GO:0022607;cellular component assembly;3.04968523575587e-33!GO:0005743;mitochondrial inner membrane;1.93980730189153e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.31504827461535e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.45226014586769e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.61143431720084e-30!GO:0010467;gene expression;7.66550614130119e-30!GO:0006886;intracellular protein transport;1.04278057089472e-29!GO:0007049;cell cycle;4.26630422031754e-29!GO:0048770;pigment granule;8.9453244227676e-29!GO:0042470;melanosome;8.9453244227676e-29!GO:0005681;spliceosome;1.72328662623769e-26!GO:0031980;mitochondrial lumen;4.84938106689354e-26!GO:0005759;mitochondrial matrix;4.84938106689354e-26!GO:0051649;establishment of cellular localization;1.54744792322962e-25!GO:0006119;oxidative phosphorylation;1.56913695320002e-25!GO:0012505;endomembrane system;2.07251228038875e-25!GO:0000166;nucleotide binding;2.31714139583754e-25!GO:0044445;cytosolic part;2.79646525877322e-25!GO:0051641;cellular localization;3.29313100539266e-25!GO:0005654;nucleoplasm;2.19566180563946e-24!GO:0044455;mitochondrial membrane part;3.66918806450023e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.29368936694363e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.41296647837344e-23!GO:0016462;pyrophosphatase activity;6.12500111651973e-23!GO:0015934;large ribosomal subunit;8.49361868284092e-23!GO:0000278;mitotic cell cycle;1.33084420827679e-22!GO:0015935;small ribosomal subunit;1.40559433781501e-22!GO:0022402;cell cycle process;8.56773952647158e-22!GO:0017111;nucleoside-triphosphatase activity;2.96948866358051e-21!GO:0006457;protein folding;5.48981747084204e-21!GO:0051186;cofactor metabolic process;8.69624735803884e-21!GO:0005783;endoplasmic reticulum;2.52808161713178e-20!GO:0044451;nucleoplasm part;2.21447575851986e-19!GO:0005746;mitochondrial respiratory chain;2.55197193936735e-19!GO:0005694;chromosome;6.06401663989702e-19!GO:0000087;M phase of mitotic cell cycle;1.52797022293126e-18!GO:0005730;nucleolus;1.52797022293126e-18!GO:0006974;response to DNA damage stimulus;2.52621930702927e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.65883213504251e-18!GO:0007067;mitosis;3.12875060160152e-18!GO:0022618;protein-RNA complex assembly;4.38639695723347e-18!GO:0005761;mitochondrial ribosome;4.79307950215091e-18!GO:0000313;organellar ribosome;4.79307950215091e-18!GO:0044427;chromosomal part;1.28605534360094e-17!GO:0022403;cell cycle phase;1.55875472178178e-17!GO:0044265;cellular macromolecule catabolic process;2.05318308796699e-17!GO:0032553;ribonucleotide binding;2.10757354921323e-17!GO:0032555;purine ribonucleotide binding;2.10757354921323e-17!GO:0017076;purine nucleotide binding;2.39963549026949e-17!GO:0016874;ligase activity;2.73811337861605e-17!GO:0050136;NADH dehydrogenase (quinone) activity;6.39013122544907e-17!GO:0003954;NADH dehydrogenase activity;6.39013122544907e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.39013122544907e-17!GO:0044432;endoplasmic reticulum part;6.39013122544907e-17!GO:0044248;cellular catabolic process;8.54844664442523e-17!GO:0051301;cell division;1.61150014524084e-16!GO:0006732;coenzyme metabolic process;1.87870019614161e-16!GO:0009057;macromolecule catabolic process;5.78990992855932e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.94695888889717e-16!GO:0003676;nucleic acid binding;1.00330164576891e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.13152662197103e-15!GO:0005635;nuclear envelope;1.41995527777857e-15!GO:0008135;translation factor activity, nucleic acid binding;1.72636309437053e-15!GO:0043285;biopolymer catabolic process;1.82932093519222e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.91053434315149e-15!GO:0006281;DNA repair;2.13959904575538e-15!GO:0051276;chromosome organization and biogenesis;2.14371626281727e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.61876614561482e-15!GO:0042773;ATP synthesis coupled electron transport;2.61876614561482e-15!GO:0005794;Golgi apparatus;2.66392396916798e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.35252183918017e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.48502106316475e-15!GO:0030964;NADH dehydrogenase complex (quinone);4.95214124842739e-15!GO:0045271;respiratory chain complex I;4.95214124842739e-15!GO:0005747;mitochondrial respiratory chain complex I;4.95214124842739e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.11290566239556e-15!GO:0019941;modification-dependent protein catabolic process;7.10236866735469e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.10236866735469e-15!GO:0006605;protein targeting;7.25453747397871e-15!GO:0000279;M phase;1.00086985017863e-14!GO:0006512;ubiquitin cycle;1.2171669666731e-14!GO:0044257;cellular protein catabolic process;1.38414495816824e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.48330974501356e-14!GO:0051082;unfolded protein binding;5.89456396877913e-14!GO:0042254;ribosome biogenesis and assembly;6.33954650607161e-14!GO:0031965;nuclear membrane;6.67942370863944e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.95653174054289e-14!GO:0000375;RNA splicing, via transesterification reactions;8.95653174054289e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.95653174054289e-14!GO:0006260;DNA replication;1.05228480429778e-13!GO:0005524;ATP binding;1.35584728439275e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.40607818587539e-13!GO:0016192;vesicle-mediated transport;1.97870492697596e-13!GO:0032559;adenyl ribonucleotide binding;2.54176899299245e-13!GO:0044453;nuclear membrane part;3.24179330879423e-13!GO:0030163;protein catabolic process;3.41124958210955e-13!GO:0005789;endoplasmic reticulum membrane;3.52368323219818e-13!GO:0030554;adenyl nucleotide binding;3.79679882005281e-13!GO:0009719;response to endogenous stimulus;4.82261869844065e-13!GO:0048193;Golgi vesicle transport;6.13210338259488e-13!GO:0009055;electron carrier activity;6.5988589906374e-13!GO:0006163;purine nucleotide metabolic process;7.59906365679338e-13!GO:0009259;ribonucleotide metabolic process;8.44384593922933e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.45096379768082e-12!GO:0008134;transcription factor binding;2.79323071171028e-12!GO:0006323;DNA packaging;5.36034514064384e-12!GO:0006164;purine nucleotide biosynthetic process;7.52593201464819e-12!GO:0009150;purine ribonucleotide metabolic process;8.11893495933087e-12!GO:0045333;cellular respiration;1.35300349429486e-11!GO:0003743;translation initiation factor activity;1.92472574971556e-11!GO:0006413;translational initiation;1.95323144762383e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.43264485695737e-11!GO:0009060;aerobic respiration;2.95400903681173e-11!GO:0009260;ribonucleotide biosynthetic process;3.06316785028236e-11!GO:0006399;tRNA metabolic process;3.16168008034207e-11!GO:0006461;protein complex assembly;3.16168008034207e-11!GO:0009056;catabolic process;3.37446566184366e-11!GO:0015630;microtubule cytoskeleton;3.38765181937424e-11!GO:0065004;protein-DNA complex assembly;5.80940857756104e-11!GO:0043412;biopolymer modification;6.33585903002332e-11!GO:0005643;nuclear pore;6.51597123747194e-11!GO:0042623;ATPase activity, coupled;7.47442696790282e-11!GO:0009152;purine ribonucleotide biosynthetic process;8.06844247159528e-11!GO:0008565;protein transporter activity;1.0870344037094e-10!GO:0009141;nucleoside triphosphate metabolic process;1.6768393847138e-10!GO:0016887;ATPase activity;1.69810442837645e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.79668645994237e-10!GO:0051188;cofactor biosynthetic process;1.93022265984404e-10!GO:0006446;regulation of translational initiation;2.05521873057024e-10!GO:0000074;regulation of progression through cell cycle;2.05911438250478e-10!GO:0051726;regulation of cell cycle;2.17382863854056e-10!GO:0006333;chromatin assembly or disassembly;3.1307876023137e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.28222880316929e-10!GO:0009144;purine nucleoside triphosphate metabolic process;3.28222880316929e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.67697889344997e-10!GO:0000785;chromatin;3.96568310637108e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.60008924187268e-10!GO:0065002;intracellular protein transport across a membrane;7.33315439150163e-10!GO:0016491;oxidoreductase activity;1.07923676970348e-09!GO:0006464;protein modification process;1.33216423600713e-09!GO:0016070;RNA metabolic process;1.60405078671023e-09!GO:0015986;ATP synthesis coupled proton transport;1.91325904840223e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.91325904840223e-09!GO:0003924;GTPase activity;2.61552141958176e-09!GO:0006364;rRNA processing;2.69626272070848e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.10305573855625e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.10305573855625e-09!GO:0016604;nuclear body;3.16514751192616e-09!GO:0006099;tricarboxylic acid cycle;3.17226790557516e-09!GO:0046356;acetyl-CoA catabolic process;3.17226790557516e-09!GO:0046034;ATP metabolic process;3.17226790557516e-09!GO:0006334;nucleosome assembly;4.84648447692614e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.90028190463571e-09!GO:0031988;membrane-bound vesicle;5.20575372925982e-09!GO:0005768;endosome;5.25895505515147e-09!GO:0050657;nucleic acid transport;5.34010911965527e-09!GO:0051236;establishment of RNA localization;5.34010911965527e-09!GO:0050658;RNA transport;5.34010911965527e-09!GO:0007005;mitochondrion organization and biogenesis;5.51755505690779e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.52883354235878e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.52883354235878e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.75902120179728e-09!GO:0016072;rRNA metabolic process;5.98284149545403e-09!GO:0006403;RNA localization;6.14738607472694e-09!GO:0006084;acetyl-CoA metabolic process;6.32522270542385e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.11190456768718e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.11190456768718e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.11190456768718e-09!GO:0009117;nucleotide metabolic process;7.50732010698584e-09!GO:0046930;pore complex;7.62068810372284e-09!GO:0019829;cation-transporting ATPase activity;8.88334005462656e-09!GO:0031497;chromatin assembly;1.14048474855468e-08!GO:0006913;nucleocytoplasmic transport;1.18027515996585e-08!GO:0043038;amino acid activation;1.18288337938015e-08!GO:0006418;tRNA aminoacylation for protein translation;1.18288337938015e-08!GO:0043039;tRNA aminoacylation;1.18288337938015e-08!GO:0005793;ER-Golgi intermediate compartment;1.39150762999941e-08!GO:0048475;coated membrane;1.71716463893745e-08!GO:0030117;membrane coat;1.71716463893745e-08!GO:0009108;coenzyme biosynthetic process;2.12007522856819e-08!GO:0051169;nuclear transport;3.12699702056565e-08!GO:0016740;transferase activity;4.63160558046877e-08!GO:0031982;vesicle;4.72359417292646e-08!GO:0051187;cofactor catabolic process;4.73037209172172e-08!GO:0006754;ATP biosynthetic process;4.79586069507711e-08!GO:0006753;nucleoside phosphate metabolic process;4.79586069507711e-08!GO:0016853;isomerase activity;4.81825655251907e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.84170769773028e-08!GO:0031410;cytoplasmic vesicle;5.31348660927136e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.46255350393513e-08!GO:0005773;vacuole;6.37040890181976e-08!GO:0043687;post-translational protein modification;6.96543500175386e-08!GO:0003697;single-stranded DNA binding;7.28854190844784e-08!GO:0009109;coenzyme catabolic process;7.72838389532887e-08!GO:0008639;small protein conjugating enzyme activity;8.62206904326792e-08!GO:0004386;helicase activity;8.99569721404944e-08!GO:0043566;structure-specific DNA binding;9.32775628202602e-08!GO:0003712;transcription cofactor activity;9.87582223098756e-08!GO:0012501;programmed cell death;1.00560858067704e-07!GO:0006915;apoptosis;1.3295243025809e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.333825523532e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.40081219756298e-07!GO:0017038;protein import;1.6338176519112e-07!GO:0004842;ubiquitin-protein ligase activity;1.6858692994094e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.73784261987758e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.75781163951875e-07!GO:0030120;vesicle coat;1.79393632964336e-07!GO:0030662;coated vesicle membrane;1.79393632964336e-07!GO:0044431;Golgi apparatus part;1.85026674271925e-07!GO:0005819;spindle;2.52975435975525e-07!GO:0019787;small conjugating protein ligase activity;2.76094929738376e-07!GO:0051028;mRNA transport;3.05625169082241e-07!GO:0000323;lytic vacuole;4.16682844678774e-07!GO:0005764;lysosome;4.16682844678774e-07!GO:0016126;sterol biosynthetic process;4.16682844678774e-07!GO:0016607;nuclear speck;4.91089478023055e-07!GO:0008026;ATP-dependent helicase activity;5.80985862255684e-07!GO:0006091;generation of precursor metabolites and energy;5.87373913028052e-07!GO:0006752;group transfer coenzyme metabolic process;6.35820581977425e-07!GO:0016787;hydrolase activity;6.82947591174867e-07!GO:0043623;cellular protein complex assembly;6.93060424198192e-07!GO:0045259;proton-transporting ATP synthase complex;6.98578803409341e-07!GO:0008219;cell death;8.26068405538215e-07!GO:0016265;death;8.26068405538215e-07!GO:0000775;chromosome, pericentric region;8.26068405538215e-07!GO:0005525;GTP binding;8.91067353496287e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.1032383159956e-06!GO:0007051;spindle organization and biogenesis;1.13446667892143e-06!GO:0008654;phospholipid biosynthetic process;1.5550763265954e-06!GO:0016568;chromatin modification;1.59508824592979e-06!GO:0005762;mitochondrial large ribosomal subunit;1.72901826707905e-06!GO:0000315;organellar large ribosomal subunit;1.72901826707905e-06!GO:0000245;spliceosome assembly;1.76487504858997e-06!GO:0005798;Golgi-associated vesicle;1.9746417083178e-06!GO:0005770;late endosome;2.17790106596582e-06!GO:0016881;acid-amino acid ligase activity;2.30035440305507e-06!GO:0051246;regulation of protein metabolic process;2.36522820003544e-06!GO:0005667;transcription factor complex;2.8220851134573e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.40813453166142e-06!GO:0006695;cholesterol biosynthetic process;3.54999656078392e-06!GO:0016779;nucleotidyltransferase activity;3.85220990102521e-06!GO:0000314;organellar small ribosomal subunit;4.70805388319732e-06!GO:0005763;mitochondrial small ribosomal subunit;4.70805388319732e-06!GO:0007010;cytoskeleton organization and biogenesis;6.23358375467073e-06!GO:0006613;cotranslational protein targeting to membrane;6.59851075975075e-06!GO:0032446;protein modification by small protein conjugation;6.6845019713421e-06!GO:0006261;DNA-dependent DNA replication;6.81934886914491e-06!GO:0032561;guanyl ribonucleotide binding;7.64980906949808e-06!GO:0019001;guanyl nucleotide binding;7.64980906949808e-06!GO:0048471;perinuclear region of cytoplasm;8.05906210475257e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.02288467181702e-05!GO:0045454;cell redox homeostasis;1.04948876905797e-05!GO:0016567;protein ubiquitination;1.07326504010892e-05!GO:0044440;endosomal part;1.2862023712514e-05!GO:0010008;endosome membrane;1.2862023712514e-05!GO:0031252;leading edge;1.31113555298751e-05!GO:0051325;interphase;1.33083967189404e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.46601075688251e-05!GO:0051329;interphase of mitotic cell cycle;1.53058567998632e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.64076519934901e-05!GO:0008610;lipid biosynthetic process;1.64725503083531e-05!GO:0005657;replication fork;1.76018096683242e-05!GO:0019752;carboxylic acid metabolic process;2.05471115530479e-05!GO:0006082;organic acid metabolic process;2.16628619023274e-05!GO:0043021;ribonucleoprotein binding;2.37776867687828e-05!GO:0005874;microtubule;2.45276927268659e-05!GO:0048523;negative regulation of cellular process;2.45276927268659e-05!GO:0004298;threonine endopeptidase activity;2.48635706716057e-05!GO:0006916;anti-apoptosis;2.59013717183547e-05!GO:0000139;Golgi membrane;2.64854977627042e-05!GO:0003899;DNA-directed RNA polymerase activity;2.66048797120161e-05!GO:0019748;secondary metabolic process;2.92833597745318e-05!GO:0006366;transcription from RNA polymerase II promoter;3.00275932838787e-05!GO:0043069;negative regulation of programmed cell death;3.37762978893084e-05!GO:0009165;nucleotide biosynthetic process;4.1032642335311e-05!GO:0043066;negative regulation of apoptosis;4.15675935718117e-05!GO:0044262;cellular carbohydrate metabolic process;4.23679781642062e-05!GO:0006793;phosphorus metabolic process;4.6603646671845e-05!GO:0006796;phosphate metabolic process;4.6603646671845e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.68966987108083e-05!GO:0016859;cis-trans isomerase activity;4.89024281012815e-05!GO:0005813;centrosome;4.90465207024641e-05!GO:0005815;microtubule organizing center;5.2288784524476e-05!GO:0031968;organelle outer membrane;5.323196807206e-05!GO:0045786;negative regulation of progression through cell cycle;5.66619314541064e-05!GO:0008094;DNA-dependent ATPase activity;5.66619314541064e-05!GO:0003724;RNA helicase activity;5.83743467942134e-05!GO:0005788;endoplasmic reticulum lumen;6.420488441772e-05!GO:0000151;ubiquitin ligase complex;7.33787097503802e-05!GO:0019867;outer membrane;7.70460181572109e-05!GO:0005905;coated pit;8.40746637963238e-05!GO:0006612;protein targeting to membrane;8.43507445259569e-05!GO:0005791;rough endoplasmic reticulum;9.62398777494398e-05!GO:0006839;mitochondrial transport;9.72069543067433e-05!GO:0006626;protein targeting to mitochondrion;9.7776104912688e-05!GO:0006414;translational elongation;0.000106766671561315!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000128950509523973!GO:0051427;hormone receptor binding;0.000144648583786227!GO:0000786;nucleosome;0.000158717419003037!GO:0043681;protein import into mitochondrion;0.000164209283682187!GO:0051170;nuclear import;0.000167887202925264!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000170819239373092!GO:0030659;cytoplasmic vesicle membrane;0.000210303956909215!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000215511806257927!GO:0005741;mitochondrial outer membrane;0.000239606523814811!GO:0006520;amino acid metabolic process;0.000274928657588903!GO:0000776;kinetochore;0.000276674597016248!GO:0006606;protein import into nucleus;0.000278766604917557!GO:0016363;nuclear matrix;0.000286195988618956!GO:0035257;nuclear hormone receptor binding;0.00029406896664958!GO:0046474;glycerophospholipid biosynthetic process;0.000302011190429425!GO:0000075;cell cycle checkpoint;0.000303970005177256!GO:0007059;chromosome segregation;0.000324358887196498!GO:0030867;rough endoplasmic reticulum membrane;0.000331838203380075!GO:0042981;regulation of apoptosis;0.00033497835733623!GO:0003714;transcription corepressor activity;0.00034297363187373!GO:0007017;microtubule-based process;0.000350644419297682!GO:0042440;pigment metabolic process;0.000366430345140704!GO:0005769;early endosome;0.000371836937474059!GO:0042802;identical protein binding;0.000376344749932601!GO:0016310;phosphorylation;0.000384442047491686!GO:0043067;regulation of programmed cell death;0.000396265807650533!GO:0006383;transcription from RNA polymerase III promoter;0.000415733460164112!GO:0008250;oligosaccharyl transferase complex;0.000424422275512438!GO:0050662;coenzyme binding;0.000429504004420177!GO:0044433;cytoplasmic vesicle part;0.000430416079847607!GO:0015631;tubulin binding;0.000435440146936067!GO:0030118;clathrin coat;0.000439429671996073!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000440465791387718!GO:0004576;oligosaccharyl transferase activity;0.000446248117451353!GO:0048519;negative regulation of biological process;0.000454648041023602!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000456560740319223!GO:0006720;isoprenoid metabolic process;0.000458831445988926!GO:0033116;ER-Golgi intermediate compartment membrane;0.000462029225259129!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000462029225259129!GO:0008033;tRNA processing;0.000471919116994908!GO:0003713;transcription coactivator activity;0.000514880436887067!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000523791161040574!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000544429298795772!GO:0051920;peroxiredoxin activity;0.000556518464618057!GO:0007006;mitochondrial membrane organization and biogenesis;0.000574754523625033!GO:0046467;membrane lipid biosynthetic process;0.000589675403108939!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000624811058444032!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000626461089737565!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000626461089737565!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000626461089737565!GO:0030880;RNA polymerase complex;0.000640666148078248!GO:0007088;regulation of mitosis;0.00064852611213632!GO:0000059;protein import into nucleus, docking;0.000650098379651728!GO:0005885;Arp2/3 protein complex;0.000661368429966751!GO:0051168;nuclear export;0.000665009928147522!GO:0012506;vesicle membrane;0.000668632449256659!GO:0003690;double-stranded DNA binding;0.000685101993076318!GO:0044255;cellular lipid metabolic process;0.000694664124928757!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000750818433778817!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000768378861526489!GO:0003684;damaged DNA binding;0.000800068624844335!GO:0019899;enzyme binding;0.000819493287970665!GO:0016860;intramolecular oxidoreductase activity;0.000843748164670396!GO:0007052;mitotic spindle organization and biogenesis;0.000843748164670396!GO:0008092;cytoskeletal protein binding;0.000870973583237047!GO:0046148;pigment biosynthetic process;0.000876829716653685!GO:0003729;mRNA binding;0.000944985260841137!GO:0030133;transport vesicle;0.00103935438220022!GO:0008186;RNA-dependent ATPase activity;0.00104351743596418!GO:0044452;nucleolar part;0.00109287895593067!GO:0051287;NAD binding;0.00110103246783716!GO:0018196;peptidyl-asparagine modification;0.00115866593178717!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00115866593178717!GO:0016044;membrane organization and biogenesis;0.0011646561265847!GO:0030036;actin cytoskeleton organization and biogenesis;0.00117141052929081!GO:0031124;mRNA 3'-end processing;0.00118337140406321!GO:0006643;membrane lipid metabolic process;0.00119214663219503!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00124309475134412!GO:0006007;glucose catabolic process;0.00127351965232441!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00137161730148406!GO:0019843;rRNA binding;0.00143268469410815!GO:0016125;sterol metabolic process;0.00151747768918849!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00152228090071863!GO:0000428;DNA-directed RNA polymerase complex;0.00152228090071863!GO:0048487;beta-tubulin binding;0.00154530870013548!GO:0016564;transcription repressor activity;0.0015629695767451!GO:0030663;COPI coated vesicle membrane;0.00156499395128217!GO:0030126;COPI vesicle coat;0.00156499395128217!GO:0005684;U2-dependent spliceosome;0.00158537069356409!GO:0030658;transport vesicle membrane;0.00164341590218223!GO:0048500;signal recognition particle;0.00164551054970658!GO:0043284;biopolymer biosynthetic process;0.00165563602848471!GO:0003682;chromatin binding;0.00166606222618288!GO:0051087;chaperone binding;0.00169002723602263!GO:0007040;lysosome organization and biogenesis;0.00169535522616879!GO:0015992;proton transport;0.00172612497340537!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00184603824954514!GO:0015399;primary active transmembrane transporter activity;0.00184603824954514!GO:0006302;double-strand break repair;0.00186834618643278!GO:0006818;hydrogen transport;0.00188238150043739!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00193827521700118!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00193827521700118!GO:0031072;heat shock protein binding;0.00211888034114615!GO:0051252;regulation of RNA metabolic process;0.00216626728964443!GO:0005048;signal sequence binding;0.00218252888255587!GO:0003746;translation elongation factor activity;0.00218574216194394!GO:0001726;ruffle;0.0022085108256799!GO:0006378;mRNA polyadenylation;0.00224744264191554!GO:0022890;inorganic cation transmembrane transporter activity;0.00228564480163939!GO:0000096;sulfur amino acid metabolic process;0.00228870544879459!GO:0006519;amino acid and derivative metabolic process;0.00229232989629065!GO:0032508;DNA duplex unwinding;0.00229719635767734!GO:0032392;DNA geometric change;0.00229719635767734!GO:0006066;alcohol metabolic process;0.00229719635767734!GO:0007093;mitotic cell cycle checkpoint;0.0023448591946368!GO:0031324;negative regulation of cellular metabolic process;0.00240758719590659!GO:0006650;glycerophospholipid metabolic process;0.00240758719590659!GO:0006807;nitrogen compound metabolic process;0.00241067632908624!GO:0030660;Golgi-associated vesicle membrane;0.00245036799404108!GO:0016741;transferase activity, transferring one-carbon groups;0.00267467378004992!GO:0004004;ATP-dependent RNA helicase activity;0.00273548793822273!GO:0030176;integral to endoplasmic reticulum membrane;0.00273958378669751!GO:0051052;regulation of DNA metabolic process;0.00274614709288154!GO:0008168;methyltransferase activity;0.00282415436642499!GO:0051789;response to protein stimulus;0.00290739842442609!GO:0006986;response to unfolded protein;0.00290739842442609!GO:0065009;regulation of a molecular function;0.0029325919320572!GO:0008312;7S RNA binding;0.00294719339293364!GO:0043488;regulation of mRNA stability;0.00305816413581729!GO:0043487;regulation of RNA stability;0.00305816413581729!GO:0048037;cofactor binding;0.00307660812281603!GO:0008361;regulation of cell size;0.00311370598478266!GO:0005774;vacuolar membrane;0.0031263903880292!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00312695770458472!GO:0046489;phosphoinositide biosynthetic process;0.00313613692309038!GO:0008180;signalosome;0.00325515341479842!GO:0030119;AP-type membrane coat adaptor complex;0.00340143314168416!GO:0051539;4 iron, 4 sulfur cluster binding;0.00345925449597112!GO:0007264;small GTPase mediated signal transduction;0.00351275200583521!GO:0001558;regulation of cell growth;0.00357626543043719!GO:0009308;amine metabolic process;0.00357626543043719!GO:0007033;vacuole organization and biogenesis;0.00359460096706789!GO:0006402;mRNA catabolic process;0.0036896808081868!GO:0050794;regulation of cellular process;0.00372163972324831!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00377139227049597!GO:0045047;protein targeting to ER;0.00377139227049597!GO:0006220;pyrimidine nucleotide metabolic process;0.00390468821197653!GO:0031902;late endosome membrane;0.00404813138928345!GO:0006595;polyamine metabolic process;0.00404813138928345!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00404813138928345!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00411274758556882!GO:0006268;DNA unwinding during replication;0.00413268091416294!GO:0016049;cell growth;0.00415664233859232!GO:0006644;phospholipid metabolic process;0.0042777126874557!GO:0030029;actin filament-based process;0.00442042838046628!GO:0007034;vacuolar transport;0.00455726560781521!GO:0016563;transcription activator activity;0.00457291026307817!GO:0030137;COPI-coated vesicle;0.00462976463397255!GO:0030131;clathrin adaptor complex;0.00469172020895474!GO:0004527;exonuclease activity;0.00474812689279657!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00482782888608992!GO:0008022;protein C-terminus binding;0.00483675930501784!GO:0008632;apoptotic program;0.00484490012218228!GO:0003678;DNA helicase activity;0.0048936307500848!GO:0016197;endosome transport;0.00490170858216178!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00501274866317393!GO:0009892;negative regulation of metabolic process;0.00511177803845856!GO:0030521;androgen receptor signaling pathway;0.00517193384184415!GO:0006401;RNA catabolic process;0.00520101068475461!GO:0006891;intra-Golgi vesicle-mediated transport;0.00544186408389274!GO:0006352;transcription initiation;0.00544449885861028!GO:0035258;steroid hormone receptor binding;0.00546358277692956!GO:0006144;purine base metabolic process;0.00597341255178965!GO:0005637;nuclear inner membrane;0.00607212641781339!GO:0046483;heterocycle metabolic process;0.00613834171321672!GO:0006629;lipid metabolic process;0.00633676742424076!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00633676742424076!GO:0015002;heme-copper terminal oxidase activity;0.00633676742424076!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00633676742424076!GO:0004129;cytochrome-c oxidase activity;0.00633676742424076!GO:0005869;dynactin complex;0.00633774309013082!GO:0005758;mitochondrial intermembrane space;0.00633774309013082!GO:0006733;oxidoreduction coenzyme metabolic process;0.00637566019554125!GO:0016272;prefoldin complex;0.00649710710383771!GO:0006778;porphyrin metabolic process;0.00656818439643789!GO:0033013;tetrapyrrole metabolic process;0.00656818439643789!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00661549420453056!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00669987963376896!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00670860060912214!GO:0030134;ER to Golgi transport vesicle;0.00680363572901525!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00695801144898994!GO:0043022;ribosome binding;0.00698506284754898!GO:0051540;metal cluster binding;0.00709461648358776!GO:0051536;iron-sulfur cluster binding;0.00709461648358776!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00736713464670793!GO:0031123;RNA 3'-end processing;0.00765076385119215!GO:0042393;histone binding;0.00775321318601275!GO:0016251;general RNA polymerase II transcription factor activity;0.00776885573500418!GO:0030027;lamellipodium;0.00827334988452903!GO:0005832;chaperonin-containing T-complex;0.00865642959042207!GO:0044437;vacuolar part;0.00875664029299231!GO:0006310;DNA recombination;0.00877888512135772!GO:0030132;clathrin coat of coated pit;0.00886053752960489!GO:0030127;COPII vesicle coat;0.00897765814610135!GO:0012507;ER to Golgi transport vesicle membrane;0.00897765814610135!GO:0016408;C-acyltransferase activity;0.00908167474276719!GO:0031970;organelle envelope lumen;0.00908167474276719!GO:0006289;nucleotide-excision repair;0.00911478920458042!GO:0005765;lysosomal membrane;0.00922448664155532!GO:0007021;tubulin folding;0.00935530843309879!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00954573457786245!GO:0006740;NADPH regeneration;0.00964271904864017!GO:0006098;pentose-phosphate shunt;0.00964271904864017!GO:0046519;sphingoid metabolic process;0.00974446673887448!GO:0000049;tRNA binding;0.00988886122957578!GO:0017166;vinculin binding;0.0100072091484761!GO:0043624;cellular protein complex disassembly;0.0103056883149477!GO:0006611;protein export from nucleus;0.0104399740148087!GO:0008287;protein serine/threonine phosphatase complex;0.0104469586711401!GO:0043492;ATPase activity, coupled to movement of substances;0.0105929931353407!GO:0032984;macromolecular complex disassembly;0.0106559408729773!GO:0006096;glycolysis;0.0107017555774291!GO:0006672;ceramide metabolic process;0.0107872839679189!GO:0030496;midbody;0.0110480566798987!GO:0005876;spindle microtubule;0.0111624848258545!GO:0008299;isoprenoid biosynthetic process;0.0112480985112546!GO:0022411;cellular component disassembly;0.0112846922778614!GO:0006979;response to oxidative stress;0.0113375368045126!GO:0009116;nucleoside metabolic process;0.0115068282599766!GO:0005996;monosaccharide metabolic process;0.0118137970689831!GO:0003711;transcription elongation regulator activity;0.0119372497173563!GO:0006118;electron transport;0.0125079598053121!GO:0000339;RNA cap binding;0.0126880332308913!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0128556575440269!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0129272329936453!GO:0004448;isocitrate dehydrogenase activity;0.0129841013672093!GO:0006509;membrane protein ectodomain proteolysis;0.0129841013672093!GO:0033619;membrane protein proteolysis;0.0129841013672093!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0129897953950801!GO:0046365;monosaccharide catabolic process;0.0130003996854809!GO:0050681;androgen receptor binding;0.0132457202839523!GO:0000922;spindle pole;0.0132457202839523!GO:0006338;chromatin remodeling;0.0133898102787446!GO:0019318;hexose metabolic process;0.0134331301723497!GO:0000228;nuclear chromosome;0.0135144268582431!GO:0006405;RNA export from nucleus;0.0136290980706924!GO:0016584;nucleosome positioning;0.0141066365449108!GO:0000082;G1/S transition of mitotic cell cycle;0.0151776087804356!GO:0006779;porphyrin biosynthetic process;0.0155987842862822!GO:0033014;tetrapyrrole biosynthetic process;0.0155987842862822!GO:0044438;microbody part;0.0156494506353658!GO:0044439;peroxisomal part;0.0156494506353658!GO:0008234;cysteine-type peptidase activity;0.015651402842343!GO:0009303;rRNA transcription;0.015651402842343!GO:0005975;carbohydrate metabolic process;0.0159773760129899!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0159773760129899!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0161570260162092!GO:0008601;protein phosphatase type 2A regulator activity;0.0162988921948672!GO:0009112;nucleobase metabolic process;0.0162988921948672!GO:0005862;muscle thin filament tropomyosin;0.0164783613903082!GO:0046164;alcohol catabolic process;0.0165626092675158!GO:0008139;nuclear localization sequence binding;0.0166906873422038!GO:0008203;cholesterol metabolic process;0.016888958989945!GO:0030125;clathrin vesicle coat;0.016888958989945!GO:0030665;clathrin coated vesicle membrane;0.016888958989945!GO:0019206;nucleoside kinase activity;0.0168910710574456!GO:0006284;base-excision repair;0.0169762870678244!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0171963722091153!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0171963722091153!GO:0030384;phosphoinositide metabolic process;0.0171963722091153!GO:0016481;negative regulation of transcription;0.0171963722091153!GO:0008017;microtubule binding;0.0175197163268793!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0176808444450485!GO:0009262;deoxyribonucleotide metabolic process;0.0178220453469893!GO:0000178;exosome (RNase complex);0.0180602973607124!GO:0043130;ubiquitin binding;0.0181556793366668!GO:0032182;small conjugating protein binding;0.0181556793366668!GO:0045045;secretory pathway;0.0181821677009402!GO:0000792;heterochromatin;0.0183116651786057!GO:0015036;disulfide oxidoreductase activity;0.0187273451784058!GO:0043241;protein complex disassembly;0.0187813004653151!GO:0051098;regulation of binding;0.0187813004653151!GO:0043631;RNA polyadenylation;0.0190819604998226!GO:0000097;sulfur amino acid biosynthetic process;0.0194319955757908!GO:0031901;early endosome membrane;0.0199620087671953!GO:0042168;heme metabolic process;0.0206048887214975!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0206061234778245!GO:0019320;hexose catabolic process;0.0207240198051042!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0207661136174329!GO:0008097;5S rRNA binding;0.0208544014411771!GO:0030145;manganese ion binding;0.0209318445418806!GO:0000910;cytokinesis;0.0211263362808476!GO:0006749;glutathione metabolic process;0.0217500234461969!GO:0032981;mitochondrial respiratory chain complex I assembly;0.022008756369272!GO:0010257;NADH dehydrogenase complex assembly;0.022008756369272!GO:0033108;mitochondrial respiratory chain complex assembly;0.022008756369272!GO:0003756;protein disulfide isomerase activity;0.0225813954317648!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0225813954317648!GO:0031903;microbody membrane;0.0225946247871103!GO:0005778;peroxisomal membrane;0.0225946247871103!GO:0000209;protein polyubiquitination;0.0226749792535182!GO:0007050;cell cycle arrest;0.0234850841291951!GO:0000118;histone deacetylase complex;0.0234850841291951!GO:0000159;protein phosphatase type 2A complex;0.0235071508767813!GO:0051128;regulation of cellular component organization and biogenesis;0.0239693883843362!GO:0043596;nuclear replication fork;0.0244003356699217!GO:0016791;phosphoric monoester hydrolase activity;0.0244208672186157!GO:0004518;nuclease activity;0.024506217606772!GO:0006730;one-carbon compound metabolic process;0.0249269496119287!GO:0035035;histone acetyltransferase binding;0.0253173559348495!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0259754304278011!GO:0050790;regulation of catalytic activity;0.0269095410917895!GO:0006767;water-soluble vitamin metabolic process;0.027052195888582!GO:0008652;amino acid biosynthetic process;0.0279114055656899!GO:0005875;microtubule associated complex;0.0281204898449059!GO:0005938;cell cortex;0.0283924988341908!GO:0007041;lysosomal transport;0.0284238539632343!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0285408123192351!GO:0006376;mRNA splice site selection;0.0288910486340241!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0288910486340241!GO:0005784;translocon complex;0.0289176871905991!GO:0030100;regulation of endocytosis;0.0295202979473045!GO:0006497;protein amino acid lipidation;0.029723352163612!GO:0009124;nucleoside monophosphate biosynthetic process;0.0298871895471192!GO:0009123;nucleoside monophosphate metabolic process;0.0298871895471192!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0299033660092983!GO:0004192;cathepsin D activity;0.0299769863754055!GO:0004532;exoribonuclease activity;0.0301011867462487!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0301011867462487!GO:0003923;GPI-anchor transamidase activity;0.0312908663109221!GO:0016255;attachment of GPI anchor to protein;0.0312908663109221!GO:0042765;GPI-anchor transamidase complex;0.0312908663109221!GO:0000287;magnesium ion binding;0.0312908663109221!GO:0008538;proteasome activator activity;0.0316123012206076!GO:0042158;lipoprotein biosynthetic process;0.0316123012206076!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0331273303251245!GO:0005777;peroxisome;0.0332120610786011!GO:0042579;microbody;0.0332120610786011!GO:0031371;ubiquitin conjugating enzyme complex;0.0332120610786011!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0334642874259506!GO:0016301;kinase activity;0.0334992870697417!GO:0032259;methylation;0.0336650708216002!GO:0030508;thiol-disulfide exchange intermediate activity;0.0339601284186622!GO:0042026;protein refolding;0.0342213124717391!GO:0050811;GABA receptor binding;0.0346945284072531!GO:0033673;negative regulation of kinase activity;0.0347599142708362!GO:0006469;negative regulation of protein kinase activity;0.0347599142708362!GO:0044454;nuclear chromosome part;0.034887373617042!GO:0050178;phenylpyruvate tautomerase activity;0.0349977624185769!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0350974984525472!GO:0006897;endocytosis;0.0354859038692099!GO:0010324;membrane invagination;0.0354859038692099!GO:0043414;biopolymer methylation;0.0356821852536536!GO:0030149;sphingolipid catabolic process;0.0369666732993024!GO:0006275;regulation of DNA replication;0.0371345413445195!GO:0004003;ATP-dependent DNA helicase activity;0.0381629429575611!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0382742868221353!GO:0045039;protein import into mitochondrial inner membrane;0.0382742868221353!GO:0009451;RNA modification;0.0384956077018282!GO:0004300;enoyl-CoA hydratase activity;0.0390321295230152!GO:0004674;protein serine/threonine kinase activity;0.0392315873328606!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0396150805349903!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0397837033335405!GO:0033559;unsaturated fatty acid metabolic process;0.0400062928036528!GO:0006636;unsaturated fatty acid biosynthetic process;0.0400062928036528!GO:0005663;DNA replication factor C complex;0.0404796928951128!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0412063664049788!GO:0016615;malate dehydrogenase activity;0.0412063664049788!GO:0005669;transcription factor TFIID complex;0.0416866780352565!GO:0004197;cysteine-type endopeptidase activity;0.0421479556261785!GO:0030032;lamellipodium biogenesis;0.0421479556261785!GO:0030911;TPR domain binding;0.0425407854831474!GO:0051348;negative regulation of transferase activity;0.0426234030164273!GO:0046128;purine ribonucleoside metabolic process;0.0426853558534454!GO:0042278;purine nucleoside metabolic process;0.0426853558534454!GO:0016407;acetyltransferase activity;0.0431155706953084!GO:0046488;phosphatidylinositol metabolic process;0.0435464607463546!GO:0006739;NADP metabolic process;0.0435872665249487!GO:0009132;nucleoside diphosphate metabolic process;0.0437574444989949!GO:0051101;regulation of DNA binding;0.0440198224446496!GO:0009066;aspartate family amino acid metabolic process;0.0440980001797076!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0447237912857907!GO:0006506;GPI anchor biosynthetic process;0.0451677456933988!GO:0006790;sulfur metabolic process;0.0462025137556404!GO:0017134;fibroblast growth factor binding;0.046214485331607!GO:0031577;spindle checkpoint;0.0462639944092956!GO:0035267;NuA4 histone acetyltransferase complex;0.0462639944092956!GO:0030262;apoptotic nuclear changes;0.0469340995083221!GO:0006661;phosphatidylinositol biosynthetic process;0.0472684191149752!GO:0016835;carbon-oxygen lyase activity;0.0474115556278668!GO:0000086;G2/M transition of mitotic cell cycle;0.0478581654090819!GO:0000070;mitotic sister chromatid segregation;0.047943278719321!GO:0046982;protein heterodimerization activity;0.047943278719321!GO:0000725;recombinational repair;0.047943278719321!GO:0000724;double-strand break repair via homologous recombination;0.047943278719321!GO:0006635;fatty acid beta-oxidation;0.0480673354157633!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0480673354157633!GO:0006783;heme biosynthetic process;0.0484284896024887!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0485507495667628!GO:0042769;DNA damage response, detection of DNA damage;0.0492113862179789
|sample_id=11215
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=retina
|top_motifs=NKX2-1,4:2.68317645028;PAX1,9:1.85433246768;CRX:1.75702217167;ESRRA:1.6838650169;NANOG:1.67452245044;EBF1:1.66539599543;HOX{A6,A7,B6,B7}:1.49704385594;PAX8:1.3299923239;NFY{A,B,C}:1.24655033932;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23478065362;ADNP_IRX_SIX_ZHX:1.18736604179;MYOD1:1.09100101281;CDC5L:1.04346009803;E2F1..5:1.01177980321;PPARG:1.00937560671;PBX1:0.929655727237;VSX1,2:0.927197660876;STAT5{A,B}:0.904081302685;GTF2A1,2:0.878071322124;SP1:0.875365046466;NR3C1:0.86374905631;RXR{A,B,G}:0.841386245937;CDX1,2,4:0.797011398923;GFI1:0.794842726016;HSF1,2:0.785436994354;TLX1..3_NFIC{dimer}:0.784789901449;EN1,2:0.768002478836;RBPJ:0.767926873718;bHLH_family:0.758738698841;ONECUT1,2:0.752461698965;TFDP1:0.741096955397;ZIC1..3:0.718867038084;SREBF1,2:0.67696963461;PRRX1,2:0.671821526867;T:0.6669612529;ARID5B:0.630688325092;NKX6-1,2:0.622106808567;ZNF148:0.601030879217;ZNF423:0.595999626665;PDX1:0.595505274504;ZNF143:0.54963875912;PAX6:0.544763709867;NR5A1,2:0.540813346855;NFIL3:0.530058741388;HOX{A5,B5}:0.502593699723;RFX1:0.491703282934;TEAD1:0.469799411106;HAND1,2:0.44694050897;XCPE1{core}:0.433978737367;NRF1:0.422115667987;SOX17:0.415072607941;PAX5:0.405793907114;OCT4_SOX2{dimer}:0.404313348249;SOX{8,9,10}:0.384100204881;ZEB1:0.376264851523;HNF4A_NR2F1,2:0.374130958425;HOXA9_MEIS1:0.367928934991;GCM1,2:0.355729710196;LHX3,4:0.354280053386;NKX2-2,8:0.351065673765;JUN:0.342281233476;TEF:0.334625028874;TFAP4:0.327857543952;LMO2:0.286541062927;SOX2:0.284954500362;TBP:0.283940882625;POU1F1:0.27820712888;NKX2-3_NKX2-5:0.267097622653;YY1:0.266350011772;SNAI1..3:0.250445495711;HOX{A4,D4}:0.248792809535;FOXL1:0.239151732927;MYB:0.232818998675;TFAP2{A,C}:0.226414011581;FOSL2:0.225908336025;GFI1B:0.221365900424;TP53:0.204945941965;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.18484745497;IKZF2:0.181788856956;POU5F1:0.165768495073;LEF1_TCF7_TCF7L1,2:0.165067094066;FOXQ1:0.15783857129;FOXM1:0.154235835123;PATZ1:0.154007201084;MYBL2:0.153776930887;HIC1:0.153768832368;NKX3-2:0.135939195073;AIRE:0.131817022386;POU3F1..4:0.100481398888;MEF2{A,B,C,D}:0.0829848507459;EVI1:0.0819193884061;ELK1,4_GABP{A,B1}:0.0433517710345;TFAP2B:0.0390086610038;FOS_FOS{B,L1}_JUN{B,D}:0.0352271463445;FOX{I1,J2}:0.0284938063655;GTF2I:0.02553303692;ZFP161:0.0180976339815;BACH2:0.0112576075557;NFE2L2:0.0111148083271;HES1:0.00966494472347;RORA:-0.0106282918323;NFE2:-0.0197011627811;ALX1:-0.0256887922916;RXRA_VDR{dimer}:-0.0292538846424;HNF1A:-0.0363157716683;MAZ:-0.0364982445493;NR6A1:-0.0376567411042;KLF4:-0.0444375376441;POU2F1..3:-0.0466829243915;NR1H4:-0.0582032574242;EGR1..3:-0.0697737685958;SMAD1..7,9:-0.0842100826019;RREB1:-0.102342418306;TAL1_TCF{3,4,12}:-0.102888914012;NFATC1..3:-0.104875815153;GLI1..3:-0.10749045517;FOX{F1,F2,J1}:-0.110778479252;UFEwm:-0.119185836259;TBX4,5:-0.148534230901;RFX2..5_RFXANK_RFXAP:-0.169619454999;XBP1:-0.179550853735;PAX4:-0.18549382308;CUX2:-0.214758937915;FOXP1:-0.222996931222;BREu{core}:-0.223131786929;ZBTB6:-0.232462954677;NHLH1,2:-0.236175428713;PRDM1:-0.258211402836;PITX1..3:-0.260200183223;STAT1,3:-0.276321786149;SOX5:-0.300729193203;SPZ1:-0.301722571596;FOXD3:-0.304189086247;REST:-0.317515635566;IKZF1:-0.322489598743;GATA6:-0.329996073198;ALX4:-0.338222037018;SRF:-0.395515389693;MTE{core}:-0.4117048674;FOXA2:-0.435964513355;TFCP2:-0.441231373874;HLF:-0.469489055906;RUNX1..3:-0.470554303473;FOXP3:-0.473646017052;MTF1:-0.476035283297;TOPORS:-0.496138532071;GZF1:-0.499762422767;NFIX:-0.51138382727;MZF1:-0.542810671834;NFKB1_REL_RELA:-0.544241363964;SPIB:-0.547109502005;PAX3,7:-0.560015412524;FOXO1,3,4:-0.560193725736;MYFfamily:-0.57044594724;CREB1:-0.572576731942;AHR_ARNT_ARNT2:-0.580948054131;TGIF1:-0.580972792706;POU6F1:-0.601619445303;ATF2:-0.648272715273;GATA4:-0.652065377467;HMGA1,2:-0.659249741076;HIF1A:-0.694305625788;SPI1:-0.708441363097;NFE2L1:-0.709614001274;FOX{D1,D2}:-0.712320700153;EP300:-0.716806165636;CEBPA,B_DDIT3:-0.73209883495;NKX3-1:-0.73302979293;ATF5_CREB3:-0.747630220243;DBP:-0.754201825132;ATF6:-0.77717858544;ETS1,2:-0.780469804463;ATF4:-0.788456915466;STAT2,4,6:-0.798557608743;IRF1,2:-0.801514162411;PAX2:-0.809106690962;MED-1{core}:-0.826862281966;BPTF:-0.840741963843;ELF1,2,4:-0.851075284778;ZBTB16:-0.860053907783;HMX1:-0.894181617905;ZNF384:-0.897520315789;IRF7:-0.898838103557;DMAP1_NCOR{1,2}_SMARC:-0.936356582474;FOXN1:-0.952215277286;HBP1_HMGB_SSRP1_UBTF:-0.95276585209;AR:-0.967967034195;ESR1:-1.01278002399;NANOG{mouse}:-1.31112053793;MAFB:-1.32474932186;TLX2:-1.48692943529;ZNF238:-1.53866817527
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11215-116A9;search_select_hide=table117:FF:11215-116A9
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:Retinal Pigment Epithelial Cells, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10842
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueretina
dev stageNA
sexNA
ageNA
cell typeretinal pigment epithelial cell
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number6545
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005496
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10842 CAGE DRX008440 DRR009312
Accession ID Hg19

Library idBAMCTSS
CNhs10842 DRZ000737 DRZ002122
Accession ID Hg38

Library idBAMCTSS
CNhs10842 DRZ012087 DRZ013472
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005496
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.CCGTCC sRNA-Seq DRX037259 DRR041625
Accession ID Hg19

Library idBAMCTSS
SRhi10015.CCGTCC DRZ007267


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0737
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.172
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.402
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.252
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.175
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.341
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0219
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.458
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0991
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0365
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0991
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10842

Jaspar motifP-value
MA0002.20.0446
MA0003.10.95
MA0004.10.0194
MA0006.10.278
MA0007.10.968
MA0009.10.942
MA0014.10.484
MA0017.10.625
MA0018.20.294
MA0019.10.103
MA0024.13.57349e-9
MA0025.10.323
MA0027.10.458
MA0028.10.885
MA0029.10.372
MA0030.10.0102
MA0031.10.0203
MA0035.20.467
MA0038.16.19709e-5
MA0039.20.027
MA0040.10.488
MA0041.10.852
MA0042.10.605
MA0043.10.187
MA0046.10.324
MA0047.20.0244
MA0048.10.547
MA0050.11.25041e-11
MA0051.11.25972e-5
MA0052.10.994
MA0055.10.00586
MA0057.10.467
MA0058.10.00696
MA0059.10.0702
MA0060.11.33316e-21
MA0061.13.42922e-6
MA0062.20.00229
MA0065.20.0535
MA0066.10.245
MA0067.10.329
MA0068.10.811
MA0069.10.411
MA0070.10.0923
MA0071.10.204
MA0072.10.459
MA0073.10.483
MA0074.10.985
MA0076.10.79
MA0077.10.0195
MA0078.10.89
MA0079.20.505
MA0080.21.14884e-12
MA0081.10.00246
MA0083.10.047
MA0084.10.04
MA0087.10.45
MA0088.10.218
MA0090.10.00558
MA0091.10.109
MA0092.10.733
MA0093.10.018
MA0099.20.906
MA0100.10.426
MA0101.12.89335e-4
MA0102.20.0079
MA0103.10.0336
MA0104.20.121
MA0105.11.081e-4
MA0106.10.406
MA0107.19.24164e-6
MA0108.23.92817e-5
MA0111.10.584
MA0112.20.281
MA0113.10.607
MA0114.10.0295
MA0115.10.165
MA0116.10.017
MA0117.10.267
MA0119.10.86
MA0122.10.239
MA0124.10.39
MA0125.10.0537
MA0131.10.388
MA0135.10.79
MA0136.14.50653e-10
MA0137.20.0229
MA0138.20.915
MA0139.10.198
MA0140.10.636
MA0141.10.0625
MA0142.10.989
MA0143.10.806
MA0144.10.00266
MA0145.10.303
MA0146.10.724
MA0147.10.379
MA0148.10.0376
MA0149.10.505
MA0150.10.0957
MA0152.10.94
MA0153.10.667
MA0154.10.238
MA0155.10.184
MA0156.12.33307e-10
MA0157.10.0782
MA0159.10.144
MA0160.10.204
MA0162.10.468
MA0163.10.0484
MA0164.10.202
MA0258.10.271
MA0259.10.625



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10842

Novel motifP-value
10.285
100.00823
1000.266
1010.364
1020.419
1030.932
1040.63
1050.407
1060.00172
1070.435
1080.936
1090.369
110.851
1100.788
1110.0385
1120.00104
1130.0301
1140.0429
1150.88
1160.716
1170.0329
1180.575
1190.145
120.671
1200.635
1210.751
1220.447
1230.0709
1240.271
1250.893
1260.32
1270.933
1280.168
1290.604
130.485
1300.0101
1310.116
1320.975
1330.0729
1340.783
1350.0313
1360.143
1370.245
1382.62229e-4
1390.00773
140.571
1400.0287
1410.232
1420.734
1430.151
1440.249
1450.386
1460.902
1470.253
1480.111
1490.904
150.794
1500.48
1510.554
1520.997
1530.469
1540.38
1550.237
1560.35
1570.0557
1580.0996
1590.651
160.685
1600.894
1610.877
1620.253
1630.649
1640.0287
1650.0987
1660.321
1670.669
1680.238
1690.383
170.878
180.0523
190.419
20.476
200.709
210.416
220.605
230.0398
240.421
250.465
260.752
270.841
280.597
290.946
30.023
300.0744
310.748
320.007
330.405
340.601
350.262
360.904
370.411
380.84
390.848
40.863
400.0343
410.306
420.171
430.094
440.839
450.381
460.026
470.819
480.971
490.317
50.123
500.352
510.649
520.656
530.592
540.88
550.12
560.827
570.682
580.00305
590.345
60.765
600.012
610.888
620.00225
630.125
640.416
650.262
660.0252
670.958
680.77
690.0649
70.961
700.0757
710.0954
720.182
730.427
740.243
750.283
760.14
770.307
780.599
790.0306
80.707
800.157
810.209
820.0841
830.0389
840.921
850.0442
860.187
870.147
880.735
890.972
90.268
900.714
910.0219
920.0174
930.635
940.0768
950.374
960.45
970.975
980.103
990.0502



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10842


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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